Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:27:46 (21136): wrapper (7.7.26015): starting
01:27:46 (21136): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:27:46] Arguments: --nthreads 8
[2025-11-23 01:27:46] Threads: 8
[2025-11-23 01:27:46] Checking for CVMFS
[2025-11-23 01:27:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:27:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:27:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:27:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:27:48] 2.11.2.0 20802 80498 124840 153191 2 84 17278366 25165824 4632 130560 7 24650870 99.861 14577357 2064 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 01:27:48] CVMFS is ok
[2025-11-23 01:27:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:27:48] Checking for apptainer binary...
[2025-11-23 01:27:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:27:48] Running /usr/bin/apptainer --version
[2025-11-23 01:27:48] apptainer version 1.3.2-1.el7
[2025-11-23 01:27:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:28:21] cg-vwn369.simple-grid.lan
[2025-11-23 01:28:21] apptainer works
[2025-11-23 01:28:21] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:28:21] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:28:21] Starting ATLAS job with PandaID=6893843631
[2025-11-23 01:28:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:09:16]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:09:16] 2025-11-24 02:08:29,566 | INFO     | monitor loop #6193: job 0:6893843631 is in state 'finished'
[2025-11-24 03:09:16] 2025-11-24 02:08:29,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:16] 2025-11-24 02:08:30,040 | INFO     | time since job start (92165s) is within the limit (172800.0s)
[2025-11-24 03:09:16] 2025-11-24 02:08:31,255 | INFO     | PID=24944 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:09:16] 2025-11-24 02:08:31,255 | INFO     | .. there are 9 such processes running
[2025-11-24 03:09:16] 2025-11-24 02:08:32,071 | INFO     | monitor loop #6194: job 0:6893843631 is in state 'finished'
[2025-11-24 03:09:16] 2025-11-24 02:08:32,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:16] 2025-11-24 02:08:32,259 | INFO     | time since job start (92167s) is within the limit (172800.0s)
[2025-11-24 03:09:16] 2025-11-24 02:08:34,266 | INFO     | time since job start (92169s) is within the limit (172800.0s)
[2025-11-24 03:09:16] 2025-11-24 02:08:34,576 | INFO     | monitor loop #6195: job 0:6893843631 is in state 'finished'
[2025-11-24 03:09:16] 2025-11-24 02:08:34,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:16] 2025-11-24 02:08:36,281 | INFO     | time since job start (92171s) is within the limit (172800.0s)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,086 | INFO     | monitor loop #6196: job 0:6893843631 is in state 'finished'
[2025-11-24 03:09:16] 2025-11-24 02:08:37,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,268 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:09:16] 2025-11-24 02:08:37,269 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:09:16] 2025-11-24 02:08:37,271 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893843631/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,272 | INFO     | extracted standard info from prmon json
[2025-11-24 03:09:16] 2025-11-24 02:08:37,273 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:09:16] 2025-11-24 02:08:37,273 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:09:16] 2025-11-24 02:08:37,312 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:09:16] 2025-11-24 02:08:37,315 | INFO     | sum of square deviations: 1048623951616.3871
[2025-11-24 03:09:16] 2025-11-24 02:08:37,406 | INFO     | sum of deviations: 3899346357673.7705
[2025-11-24 03:09:16] 2025-11-24 02:08:37,407 | INFO     | mean x: 1763904246.2858095
[2025-11-24 03:09:16] 2025-11-24 02:08:37,407 | INFO     | mean y: 2820920.5762824784
[2025-11-24 03:09:16] 2025-11-24 02:08:37,407 | INFO     | intersect: -6556321265.178445
[2025-11-24 03:09:16] 2025-11-24 02:08:37,409 | INFO     | chi2: 30.132414560776486
[2025-11-24 03:09:16] 2025-11-24 02:08:37,412 | INFO     | sum of square deviations: 1038180139778.0927
[2025-11-24 03:09:16] 2025-11-24 02:08:37,477 | INFO     | sum of deviations: 4377712643616.111
[2025-11-24 03:09:16] 2025-11-24 02:08:37,477 | INFO     | mean x: 1763904093.790107
[2025-11-24 03:09:16] 2025-11-24 02:08:37,477 | INFO     | mean y: 2827904.3856951874
[2025-11-24 03:09:16] 2025-11-24 02:08:37,477 | INFO     | intersect: -7435057832.054698
[2025-11-24 03:09:16] 2025-11-24 02:08:37,479 | INFO     | chi2: 27.0866899799071
[2025-11-24 03:09:16] 2025-11-24 02:08:37,480 | INFO     | current chi2=27.0866899799071 (change=10.10780126739004 %)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,480 | INFO     | right removable region: 1495
[2025-11-24 03:09:16] 2025-11-24 02:08:37,485 | INFO     | sum of square deviations: 1038178962478.0931
[2025-11-24 03:09:16] 2025-11-24 02:08:37,560 | INFO     | sum of deviations: 3256231452334.235
[2025-11-24 03:09:16] 2025-11-24 02:08:37,560 | INFO     | mean x: 1763904398.790107
[2025-11-24 03:09:16] 2025-11-24 02:08:37,561 | INFO     | mean y: 2830310.4879679144
[2025-11-24 03:09:16] 2025-11-24 02:08:37,561 | INFO     | intersect: -5529627184.64477
[2025-11-24 03:09:16] 2025-11-24 02:08:37,563 | INFO     | chi2: 25.063210033601102
[2025-11-24 03:09:16] 2025-11-24 02:08:37,563 | INFO     | current chi2=25.063210033601102 (change=16.82309433567263 %)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,563 | INFO     | left removable region: 10
[2025-11-24 03:09:16] 2025-11-24 02:08:37,565 | INFO     | sum of square deviations: 1015446002789.6511
[2025-11-24 03:09:16] 2025-11-24 02:08:37,630 | INFO     | sum of deviations: 3252133156627.907
[2025-11-24 03:09:16] 2025-11-24 02:08:37,631 | INFO     | mean x: 1763904368.2996633
[2025-11-24 03:09:16] 2025-11-24 02:08:37,631 | INFO     | mean y: 2847473.8181818184
[2025-11-24 03:09:16] 2025-11-24 02:08:37,631 | INFO     | intersect: -5646346934.85432
[2025-11-24 03:09:16] 2025-11-24 02:08:37,633 | INFO     | chi2: 17.239026514631878
[2025-11-24 03:09:16] 2025-11-24 02:08:37,633 | INFO     | current memory leak: 3.20 B/s (using 1485 data points, chi2=17.24)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,636 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,636 | INFO     | ..............................
[2025-11-24 03:09:16] 2025-11-24 02:08:37,636 | INFO     | . Timing measurements:
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | . get job = 0 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | . initial setup = 4 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | . payload setup = 178 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | . stage-in = 0 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | . payload execution = 91683 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | . stage-out = 6 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | . log creation = 2 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,637 | INFO     | ..............................
[2025-11-24 03:09:16] 2025-11-24 02:08:37,771 | INFO     | 
[2025-11-24 03:09:16] 2025-11-24 02:08:37,771 | INFO     | job summary report
[2025-11-24 03:09:16] 2025-11-24 02:08:37,771 | INFO     | --------------------------------------------------
[2025-11-24 03:09:16] 2025-11-24 02:08:37,771 | INFO     | PanDA job id: 6893843631
[2025-11-24 03:09:16] 2025-11-24 02:08:37,771 | INFO     | task id: 47523449
[2025-11-24 03:09:16] 2025-11-24 02:08:37,771 | INFO     | errors: (none)
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | pilot state: finished 
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | transexitcode: 0
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | exeerrorcode: 0
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | exeerrordiag: 
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | exitcode: 0
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | exitmsg: OK
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | cpuconsumptiontime: 338166 s
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | nevents: 1000
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | neventsw: 0
[2025-11-24 03:09:16] 2025-11-24 02:08:37,772 | INFO     | pid: 31563
[2025-11-24 03:09:16] 2025-11-24 02:08:37,773 | INFO     | pgrp: 31563
[2025-11-24 03:09:16] 2025-11-24 02:08:37,773 | INFO     | corecount: 8
[2025-11-24 03:09:16] 2025-11-24 02:08:37,773 | INFO     | event service: False
[2025-11-24 03:09:16] 2025-11-24 02:08:37,773 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298863, 12: 2298863, 23: 2298891, 34: 2298919, 45: 2299075, 55: 2299103, 66: 2299131, 77: 2299159, 88: 2299215, 98: 2299523, 10
[2025-11-24 03:09:16] 2025-11-24 02:08:37,773 | INFO     | --------------------------------------------------
[2025-11-24 03:09:16] 2025-11-24 02:08:37,773 | INFO     | 
[2025-11-24 03:09:16] 2025-11-24 02:08:37,773 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-24 03:09:16] 2025-11-24 02:08:38,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:09:16] 2025-11-24 02:08:38,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:09:16] 2025-11-24 02:08:38,333 | INFO     | job 6893843631 has completed (purged errors)
[2025-11-24 03:09:16] 2025-11-24 02:08:38,333 | INFO     | overall cleanup function is called
[2025-11-24 03:09:16] 2025-11-24 02:08:39,351 | INFO     | --- collectZombieJob: --- 10, [31563]
[2025-11-24 03:09:16] 2025-11-24 02:08:39,351 | INFO     | zombie collector waiting for pid 31563
[2025-11-24 03:09:16] 2025-11-24 02:08:39,351 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:09:16] 2025-11-24 02:08:39,351 | INFO     | collected zombie processes
[2025-11-24 03:09:16] 2025-11-24 02:08:39,351 | INFO     | will attempt to kill all subprocesses of pid=31563
[2025-11-24 03:09:16] 2025-11-24 02:08:39,477 | INFO     | process IDs to be killed: [31563] (in reverse order)
[2025-11-24 03:09:16] 2025-11-24 02:08:40,633 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:09:16] 2025-11-24 02:08:40,634 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:09:16] 2025-11-24 02:08:40,637 | INFO     | did not find any defunct processes belonging to 31563
[2025-11-24 03:09:16] 2025-11-24 02:08:40,640 | INFO     | did not find any defunct processes belonging to 31563
[2025-11-24 03:09:16] 2025-11-24 02:08:40,732 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:09:16] 2025-11-24 02:08:40,732 | INFO     | ready for new job
[2025-11-24 03:09:16] 2025-11-24 02:08:40,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:09:16] 2025-11-24 02:08:40,739 | INFO     | ***************************************
[2025-11-24 03:09:16] 2025-11-24 02:08:40,740 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:09:16] 2025-11-24 02:08:40,740 | INFO     | ***************************************
[2025-11-24 03:09:16] 2025-11-24 02:08:40,740 | INFO     | 
[2025-11-24 03:09:16] 2025-11-24 02:08:40,741 | INFO     | pilot is running in a VM
[2025-11-24 03:09:16] 2025-11-24 02:08:40,741 | INFO     | architecture information:
[2025-11-24 03:09:16] 2025-11-24 02:08:40,749 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:09:16] 2025-11-24 02:08:40,903 | INFO     | cat /etc/os-release:
[2025-11-24 03:09:16] NAME="CentOS Linux"
[2025-11-24 03:09:16] VERSION="7 (Core)"
[2025-11-24 03:09:16] ID="centos"
[2025-11-24 03:09:16] ID_LIKE="rhel fedora"
[2025-11-24 03:09:16] VERSION_ID="7"
[2025-11-24 03:09:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:09:16] ANSI_COLOR="0;31"
[2025-11-24 03:09:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:09:16] HOME_URL="https://www.centos.org/"
[2025-11-24 03:09:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:09:16] 
[2025-11-24 03:09:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:09:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:09:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:09:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:09:16] 
[2025-11-24 03:09:16] 2025-11-24 02:08:40,904 | INFO     | ***************************************
[2025-11-24 03:09:16] 2025-11-24 02:08:41,407 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-24 03:09:16] 2025-11-24 02:08:41,704 | INFO     | sufficient remaining disk space (494773731328 B)
[2025-11-24 03:09:16] 2025-11-24 02:08:41,705 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:09:16] 2025-11-24 02:08:41,705 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:09:16] 2025-11-24 02:08:41,705 | INFO     | update_server=False
[2025-11-24 03:09:16] 2025-11-24 02:08:41,705 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:09:16] 2025-11-24 02:08:41,706 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:09:16] 2025-11-24 02:08:41,859 | INFO     | all data control threads have been joined
[2025-11-24 03:09:16] 2025-11-24 02:08:41,880 | INFO     | all job control threads have been joined
[2025-11-24 03:09:16] 2025-11-24 02:08:42,105 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 03:09:16] 2025-11-24 02:08:42,105 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 03:09:16] 2025-11-24 02:08:42,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:09:16] 2025-11-24 02:08:42,105 | INFO     | will abort loop
[2025-11-24 03:09:16] 2025-11-24 02:08:42,554 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:09:16] 2025-11-24 02:08:42,712 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:42,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:09:16] 2025-11-24 02:08:42,848 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:42,865 | INFO     | [data] control thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:42,886 | INFO     | [job] control thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,111 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,141 | INFO     | [job] validate thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,146 | INFO     | all payload control threads have been joined
[2025-11-24 03:09:16] 2025-11-24 02:08:43,289 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,482 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,565 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,766 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,795 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,879 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:43,880 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:44,152 | INFO     | [payload] control thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:44,561 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:08:45,717 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:09:16] 2025-11-24 02:09:05,867 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:09:16] 2025-11-24 02:09:07,459 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231876417344)>', '<ExcThread(monitor, started 140231143581440)>']
[2025-11-24 03:09:16] 2025-11-24 02:09:09,540 | INFO     | PID=24944 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:09:16] 2025-11-24 02:09:09,541 | INFO     | .. there are 9 such processes running
[2025-11-24 03:09:16] 2025-11-24 02:09:09,542 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:09:16] 2025-11-24 02:09:09,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:09:16] 2025-11-24 02:09:09,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:09:16] 2025-11-24 02:09:09,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:09:16] 2025-11-24 02:09:09,542 | INFO     | [monitor] control thread has ended
[2025-11-24 03:09:16] 2025-11-24 02:09:12,485 | INFO     | all workflow threads have been joined
[2025-11-24 03:09:16] 2025-11-24 02:09:12,485 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:09:16] 2025-11-24 02:09:12,485 | INFO     | traces error code: 0
[2025-11-24 03:09:16] 2025-11-24 02:09:12,485 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:09:16] 2025-11-24 02:09:12,820 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:09:16] 2025-11-24 02:09:12,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:09:16] 2025-11-24 02:09:12,913 [wrapper] pilotpid: 24944
[2025-11-24 03:09:16] 2025-11-24 02:09:12,941 [wrapper] Pilot exit status: 0
[2025-11-24 03:09:16] 2025-11-24 02:09:13,254 [wrapper] pandaids: 6893843631
[2025-11-24 03:09:16] 2025-11-24 02:09:14,074 [wrapper] cleanup supervisor_pilot 21972 24945
[2025-11-24 03:09:16] 2025-11-24 02:09:14,177 [wrapper] Test setup, not cleaning
[2025-11-24 03:09:16] 2025-11-24 02:09:14,281 [wrapper] apfmon messages muted
[2025-11-24 03:09:16] 2025-11-24 02:09:14,337 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:09:16] 2025-11-24 02:09:14,412 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:09:16]  *** Error codes and diagnostics ***
[2025-11-24 03:09:16]     "exeErrorCode": 0,
[2025-11-24 03:09:16]     "exeErrorDiag": "",
[2025-11-24 03:09:16]     "pilotErrorCode": 0,
[2025-11-24 03:09:16]     "pilotErrorDiag": "",
[2025-11-24 03:09:16]  *** Listing of results directory ***
[2025-11-24 03:09:16] total 1329660
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 03:09:16] -rwx------. 1 boinc boinc     36292 Nov 20 11:22 runpilot2-wrapper.sh
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:23 queuedata.json
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc       100 Nov 23 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:09:16] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 01:27 run_atlas
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc       105 Nov 23 01:27 job.xml
[2025-11-24 03:09:16] -rw-r--r--. 2 boinc boinc 412291882 Nov 23 01:27 EVNT.47493127._000205.pool.root.1
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc      6391 Nov 23 01:27 init_data.xml
[2025-11-24 03:09:16] -rw-r--r--. 2 boinc boinc     15847 Nov 23 01:27 start_atlas.sh
[2025-11-24 03:09:16] drwxrwx--x. 2 boinc boinc        68 Nov 23 01:27 shared
[2025-11-24 03:09:16] -rw-r--r--. 2 boinc boinc    590103 Nov 23 01:27 input.tar.gz
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc         0 Nov 23 01:27 boinc_lockfile
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc      2786 Nov 23 01:28 pandaJob.out
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc    989784 Nov 23 01:32 agis_schedconf.cvmfs.json
[2025-11-24 03:09:16] drwx------. 5 boinc boinc      4096 Nov 23 01:32 pilot3
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc       533 Nov 24 02:37 boinc_task_state.xml
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc 915639217 Nov 24 03:05 HITS.47523449._002043.pool.root.1
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc      1031 Nov 24 03:06 memory_monitor_summary.json
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc   1526164 Nov 24 03:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc   2571694 Nov 24 03:07 log.47523449._002043.job.log.tgz.1
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc      7950 Nov 24 03:08 heartbeat.json
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:08 wrapper_checkpoint.txt
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:08 boinc_mmap_file
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc        95 Nov 24 03:09 pilot_heartbeat.json
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc      5070 Nov 24 03:09 pilotlog.txt
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc  12293127 Nov 24 03:09 log.47523449._002043.job.log.1
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc       353 Nov 24 03:09 output.list
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:09 runtime_log
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc  14888960 Nov 24 03:09 result.tar.gz
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc       662 Nov 24 03:09 TxWMDmqyGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkRGKDmJBrYIm.diag
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc      8817 Nov 24 03:09 runtime_log.err
[2025-11-24 03:09:16] -rw-r--r--. 1 boinc boinc     21488 Nov 24 03:09 stderr.txt
[2025-11-24 03:09:16] HITS file was successfully produced:
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc 915639217 Nov 24 03:05 shared/HITS.pool.root.1
[2025-11-24 03:09:16]  *** Contents of shared directory: ***
[2025-11-24 03:09:16] total 1311948
[2025-11-24 03:09:16] -rw-r--r--. 2 boinc boinc 412291882 Nov 23 01:27 ATLAS.root_0
[2025-11-24 03:09:16] -rw-r--r--. 2 boinc boinc     15847 Nov 23 01:27 start_atlas.sh
[2025-11-24 03:09:16] -rw-r--r--. 2 boinc boinc    590103 Nov 23 01:27 input.tar.gz
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc 915639217 Nov 24 03:05 HITS.pool.root.1
[2025-11-24 03:09:16] -rw-------. 1 boinc boinc  14888960 Nov 24 03:09 result.tar.gz
03:09:18 (21136): run_atlas exited; CPU time 338722.544523
03:09:18 (21136): called boinc_finish(0)

</stderr_txt>
]]>

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