Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:39:18 (3761941): wrapper (7.7.26015): starting
14:39:18 (3761941): wrapper: running run_atlas (--nthreads 9)
[2025-11-20 14:39:18] Arguments: --nthreads 9
[2025-11-20 14:39:18] Threads: 9
[2025-11-20 14:39:18] Checking for CVMFS
[2025-11-20 14:39:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 14:39:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 14:39:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 14:39:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 14:39:22] 2.13.2.0 7693 25561 193800 153094 3 412 21548220 39288833 9417 16776704 0 18490392 99.569 17753749 28381 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 14:39:22] CVMFS is ok
[2025-11-20 14:39:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 14:39:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 14:39:22] Further information can be found at the LHC@home message board.
[2025-11-20 14:39:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 14:39:22] Checking for apptainer binary...
[2025-11-20 14:39:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 14:39:22] Running /usr/bin/apptainer --version
[2025-11-20 14:39:22] apptainer version 1.4.4-1.el9
[2025-11-20 14:39:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 14:39:24] c-210-18.aglt2.org
[2025-11-20 14:39:24] apptainer works
[2025-11-20 14:39:24] Set ATHENA_PROC_NUMBER=9
[2025-11-20 14:39:24] Set ATHENA_CORE_NUMBER=9
[2025-11-20 14:39:24] Starting ATLAS job with PandaID=6893840194
[2025-11-20 14:39:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:28:29]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:28:29] 2025-11-21 10:27:45,828 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 05:28:29] 2025-11-21 10:27:45,828 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 05:28:29] 2025-11-21 10:27:45,845 | INFO     | fitting pss+swap vs Time
[2025-11-21 05:28:29] 2025-11-21 10:27:45,846 | INFO     | sum of square deviations: 204134318220.87482
[2025-11-21 05:28:29] 2025-11-21 10:27:45,866 | INFO     | sum of deviations: 2614637374002.4907
[2025-11-21 05:28:29] 2025-11-21 10:27:45,866 | INFO     | mean x: 1763694341.2839081
[2025-11-21 05:28:29] 2025-11-21 10:27:45,866 | INFO     | mean y: 2971324.6781609193
[2025-11-21 05:28:29] 2025-11-21 10:27:45,866 | INFO     | intersect: -22587160414.209656
[2025-11-21 05:28:29] 2025-11-21 10:27:45,868 | INFO     | chi2: 8.516185549981701
[2025-11-21 05:28:29] 2025-11-21 10:27:45,869 | INFO     | sum of square deviations: 200634721494.4001
[2025-11-21 05:28:29] 2025-11-21 10:27:45,888 | INFO     | sum of deviations: 2889643434204.201
[2025-11-21 05:28:29] 2025-11-21 10:27:45,888 | INFO     | mean x: 1763694188.8
[2025-11-21 05:28:29] 2025-11-21 10:27:45,888 | INFO     | mean y: 2983298.336416185
[2025-11-21 05:28:29] 2025-11-21 10:27:45,888 | INFO     | intersect: -25398638587.69527
[2025-11-21 05:28:29] 2025-11-21 10:27:45,890 | INFO     | chi2: 5.6620138734949315
[2025-11-21 05:28:29] 2025-11-21 10:27:45,890 | INFO     | current chi2=5.6620138734949315 (change=33.51467226419113 %)
[2025-11-21 05:28:29] 2025-11-21 10:27:45,891 | INFO     | sum of square deviations: 197175358079.97208
[2025-11-21 05:28:29] 2025-11-21 10:27:45,910 | INFO     | sum of deviations: 2872689938498.859
[2025-11-21 05:28:29] 2025-11-21 10:27:45,910 | INFO     | mean x: 1763694036.3162792
[2025-11-21 05:28:29] 2025-11-21 10:27:45,910 | INFO     | mean y: 2982546.4674418606
[2025-11-21 05:28:29] 2025-11-21 10:27:45,911 | INFO     | intersect: -25692652861.793274
[2025-11-21 05:28:29] 2025-11-21 10:27:45,912 | INFO     | chi2: 5.603858374695937
[2025-11-21 05:28:29] 2025-11-21 10:27:45,912 | INFO     | current chi2=5.603858374695937 (change=1.027116854503524 %)
[2025-11-21 05:28:29] 2025-11-21 10:27:45,912 | INFO     | right removable region: 859
[2025-11-21 05:28:29] 2025-11-21 10:27:45,913 | INFO     | sum of square deviations: 200633244074.40018
[2025-11-21 05:28:29] 2025-11-21 10:27:45,933 | INFO     | sum of deviations: 2260730593876.002
[2025-11-21 05:28:29] 2025-11-21 10:27:45,933 | INFO     | mean x: 1763694493.8
[2025-11-21 05:28:29] 2025-11-21 10:27:45,933 | INFO     | mean y: 2986738.50867052
[2025-11-21 05:28:29] 2025-11-21 10:27:45,934 | INFO     | intersect: -19870280619.445896
[2025-11-21 05:28:29] 2025-11-21 10:27:45,935 | INFO     | chi2: 4.510993161996724
[2025-11-21 05:28:29] 2025-11-21 10:27:45,935 | INFO     | current chi2=4.510993161996724 (change=47.03035607289679 %)
[2025-11-21 05:28:29] 2025-11-21 10:27:45,936 | INFO     | sum of square deviations: 197172509145.23322
[2025-11-21 05:28:29] 2025-11-21 10:27:45,955 | INFO     | sum of deviations: 2041867692420.1748
[2025-11-21 05:28:29] 2025-11-21 10:27:45,956 | INFO     | mean x: 1763694646.3139534
[2025-11-21 05:28:29] 2025-11-21 10:27:45,956 | INFO     | mean y: 2996380.1104651163
[2025-11-21 05:28:29] 2025-11-21 10:27:45,956 | INFO     | intersect: -18261370864.667534
[2025-11-21 05:28:29] 2025-11-21 10:27:45,957 | INFO     | chi2: 3.2029308570659563
[2025-11-21 05:28:29] 2025-11-21 10:27:45,957 | INFO     | current chi2=3.2029308570659563 (change=28.997213206853388 %)
[2025-11-21 05:28:29] 2025-11-21 10:27:45,958 | INFO     | sum of square deviations: 193753455513.52545
[2025-11-21 05:28:29] 2025-11-21 10:27:45,977 | INFO     | sum of deviations: 1978280335425.5317
[2025-11-21 05:28:29] 2025-11-21 10:27:45,978 | INFO     | mean x: 1763694798.7906432
[2025-11-21 05:28:29] 2025-11-21 10:27:45,978 | INFO     | mean y: 2999215.466666667
[2025-11-21 05:28:29] 2025-11-21 10:27:45,978 | INFO     | intersect: -18004848587.259384
[2025-11-21 05:28:29] 2025-11-21 10:27:45,979 | INFO     | chi2: 3.175912974163082
[2025-11-21 05:28:29] 2025-11-21 10:27:45,979 | INFO     | current chi2=3.175912974163082 (change=0.8435362519072277 %)
[2025-11-21 05:28:29] 2025-11-21 10:27:45,979 | INFO     | left removable region: 30
[2025-11-21 05:28:29] 2025-11-21 10:27:45,980 | INFO     | sum of square deviations: 176607668566.54773
[2025-11-21 05:28:29] 2025-11-21 10:27:45,998 | INFO     | sum of deviations: 2078411585323.928
[2025-11-21 05:28:29] 2025-11-21 10:27:45,998 | INFO     | mean x: 1763694920.79614
[2025-11-21 05:28:29] 2025-11-21 10:27:45,998 | INFO     | mean y: 3017809.1652593487
[2025-11-21 05:28:29] 2025-11-21 10:27:45,998 | INFO     | intersect: -20753068187.05746
[2025-11-21 05:28:29] 2025-11-21 10:27:46,000 | INFO     | chi2: 0.18000965604965602
[2025-11-21 05:28:29] 2025-11-21 10:27:46,000 | INFO     | current memory leak: 11.77 B/s (using 829 data points, chi2=0.18)
[2025-11-21 05:28:29] 2025-11-21 10:27:46,001 | INFO     | could have reported an average CPU frequency of 2608 MHz (32 samples)
[2025-11-21 05:28:29] 2025-11-21 10:27:46,001 | INFO     | ..............................
[2025-11-21 05:28:29] 2025-11-21 10:27:46,001 | INFO     | . Timing measurements:
[2025-11-21 05:28:29] 2025-11-21 10:27:46,001 | INFO     | . get job = 0 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,002 | INFO     | . initial setup = 5 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,002 | INFO     | . payload setup = 56 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,002 | INFO     | . stage-in = 0 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,002 | INFO     | . payload execution = 53060 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,002 | INFO     | . stage-out = 3 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,002 | INFO     | . log creation = 0 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,002 | INFO     | ..............................
[2025-11-21 05:28:29] 2025-11-21 10:27:46,108 | INFO     | 
[2025-11-21 05:28:29] 2025-11-21 10:27:46,108 | INFO     | job summary report
[2025-11-21 05:28:29] 2025-11-21 10:27:46,108 | INFO     | --------------------------------------------------
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | PanDA job id: 6893840194
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | task id: 47523449
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | errors: (none)
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | pilot state: finished 
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | transexitcode: 0
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | exeerrorcode: 0
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | exeerrordiag: 
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | exitcode: 0
[2025-11-21 05:28:29] 2025-11-21 10:27:46,109 | INFO     | exitmsg: OK
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | cpuconsumptiontime: 283395 s
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | nevents: 1000
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | neventsw: 0
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | pid: 3775092
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | pgrp: 3775092
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | corecount: 9
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | event service: False
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | sizes: {0: 2298580, 1: 2298664, 2: 2298863, 13: 2298863, 25: 2298919, 36: 2298947, 39: 2299365, 48: 2299393, 53120: 2348427, 53125: 2357477, 53129: 2357667}
[2025-11-21 05:28:29] 2025-11-21 10:27:46,110 | INFO     | --------------------------------------------------
[2025-11-21 05:28:29] 2025-11-21 10:27:46,111 | INFO     | 
[2025-11-21 05:28:29] 2025-11-21 10:27:46,111 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 05:28:29] 2025-11-21 10:27:46,128 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,128 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,129 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 05:28:29] 2025-11-21 10:27:46,130 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,131 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 05:28:29] 2025-11-21 10:27:46,131 | INFO     | job 6893840194 has completed (purged errors)
[2025-11-21 05:28:29] 2025-11-21 10:27:46,131 | INFO     | overall cleanup function is called
[2025-11-21 05:28:29] 2025-11-21 10:27:47,147 | INFO     | --- collectZombieJob: --- 10, [3775092]
[2025-11-21 05:28:29] 2025-11-21 10:27:47,147 | INFO     | zombie collector waiting for pid 3775092
[2025-11-21 05:28:29] 2025-11-21 10:27:47,148 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 05:28:29] 2025-11-21 10:27:47,148 | INFO     | collected zombie processes
[2025-11-21 05:28:29] 2025-11-21 10:27:47,148 | INFO     | will attempt to kill all subprocesses of pid=3775092
[2025-11-21 05:28:29] 2025-11-21 10:27:47,377 | INFO     | process IDs to be killed: [3775092] (in reverse order)
[2025-11-21 05:28:29] 2025-11-21 10:27:47,443 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 05:28:29] 2025-11-21 10:27:47,443 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 05:28:29] 2025-11-21 10:27:47,450 | INFO     | did not find any defunct processes belonging to 3775092
[2025-11-21 05:28:29] 2025-11-21 10:27:47,456 | INFO     | did not find any defunct processes belonging to 3775092
[2025-11-21 05:28:29] 2025-11-21 10:27:47,457 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 05:28:29] 2025-11-21 10:27:47,457 | INFO     | ready for new job
[2025-11-21 05:28:29] 2025-11-21 10:27:47,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 05:28:29] 2025-11-21 10:27:47,462 | INFO     | ***************************************
[2025-11-21 05:28:29] 2025-11-21 10:27:47,462 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 05:28:29] 2025-11-21 10:27:47,462 | INFO     | ***************************************
[2025-11-21 05:28:29] 2025-11-21 10:27:47,462 | INFO     | 
[2025-11-21 05:28:29] 2025-11-21 10:27:47,464 | INFO     | architecture information:
[2025-11-21 05:28:29] 2025-11-21 10:27:47,465 | INFO     | executing command: cat /etc/os-release
[2025-11-21 05:28:29] 2025-11-21 10:27:47,477 | INFO     | cat /etc/os-release:
[2025-11-21 05:28:29] NAME="CentOS Linux"
[2025-11-21 05:28:29] VERSION="7 (Core)"
[2025-11-21 05:28:29] ID="centos"
[2025-11-21 05:28:29] ID_LIKE="rhel fedora"
[2025-11-21 05:28:29] VERSION_ID="7"
[2025-11-21 05:28:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:28:29] ANSI_COLOR="0;31"
[2025-11-21 05:28:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:28:29] HOME_URL="https://www.centos.org/"
[2025-11-21 05:28:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:28:29] 
[2025-11-21 05:28:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:28:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:28:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:28:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:28:29] 
[2025-11-21 05:28:29] 2025-11-21 10:27:47,477 | INFO     | ***************************************
[2025-11-21 05:28:29] 2025-11-21 10:27:47,980 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 05:28:29] 2025-11-21 10:27:47,994 | INFO     | sufficient remaining disk space (47565504512 B)
[2025-11-21 05:28:29] 2025-11-21 10:27:47,995 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:28:29] 2025-11-21 10:27:47,995 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:28:29] 2025-11-21 10:27:47,995 | INFO     | update_server=False
[2025-11-21 05:28:29] 2025-11-21 10:27:47,995 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:28:29] 2025-11-21 10:27:47,995 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:28:29] 2025-11-21 10:27:47,996 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:28:29] 2025-11-21 10:27:48,055 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:28:29] 2025-11-21 10:27:48,060 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:28:29] 2025-11-21 10:27:48,060 | INFO     | aborting loop
[2025-11-21 05:28:29] 2025-11-21 10:27:48,133 | INFO     | all data control threads have been joined
[2025-11-21 05:28:29] 2025-11-21 10:27:49,000 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,001 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,024 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,065 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,071 | INFO     | all payload control threads have been joined
[2025-11-21 05:28:29] 2025-11-21 10:27:49,129 | INFO     | all job control threads have been joined
[2025-11-21 05:28:29] 2025-11-21 10:27:49,135 | INFO     | [data] control thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,153 | INFO     | [job] validate thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,182 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,248 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,495 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,499 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:49,922 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:50,001 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:50,076 | INFO     | [payload] control thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:50,134 | INFO     | [job] control thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:50,168 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:27:52,059 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:28:29] 2025-11-21 10:28:19,021 | INFO     | PID=3767526 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 05:28:29] 2025-11-21 10:28:19,021 | INFO     | .. there are 5 such processes running
[2025-11-21 05:28:29] 2025-11-21 10:28:19,022 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:28:29] 2025-11-21 10:28:19,022 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:28:29] 2025-11-21 10:28:19,022 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:28:29] 2025-11-21 10:28:23,972 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:28:29] 2025-11-21 10:28:23,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746104731456)>', '<ExcThread(monitor, started 139745831130880)>']
[2025-11-21 05:28:29] 2025-11-21 10:28:24,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:28:29] 2025-11-21 10:28:24,039 | INFO     | [monitor] control thread has ended
[2025-11-21 05:28:29] 2025-11-21 10:28:29,013 | INFO     | all workflow threads have been joined
[2025-11-21 05:28:29] 2025-11-21 10:28:29,013 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:28:29] 2025-11-21 10:28:29,014 | INFO     | traces error code: 0
[2025-11-21 05:28:29] 2025-11-21 10:28:29,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:28:29] 2025-11-21 10:28:29,114 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:28:29] 2025-11-21 10:28:29,117 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:28:29] 2025-11-21 10:28:29,120 [wrapper] pilotpid: 3767526
[2025-11-21 05:28:29] 2025-11-21 10:28:29,122 [wrapper] Pilot exit status: 0
[2025-11-21 05:28:29] 2025-11-21 10:28:29,142 [wrapper] pandaids: 6893840194
[2025-11-21 05:28:29] 2025-11-21 10:28:29,185 [wrapper] cleanup supervisor_pilot  672973 3767527
[2025-11-21 05:28:29] 2025-11-21 10:28:29,188 [wrapper] Test setup, not cleaning
[2025-11-21 05:28:29] 2025-11-21 10:28:29,190 [wrapper] apfmon messages muted
[2025-11-21 05:28:29] 2025-11-21 10:28:29,193 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:28:29] 2025-11-21 10:28:29,195 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:28:29]  *** Error codes and diagnostics ***
[2025-11-21 05:28:29]     "exeErrorCode": 0,
[2025-11-21 05:28:29]     "exeErrorDiag": "",
[2025-11-21 05:28:29]     "pilotErrorCode": 0,
[2025-11-21 05:28:29]     "pilotErrorDiag": "",
[2025-11-21 05:28:29]  *** Listing of results directory ***
[2025-11-21 05:28:29] total 1318000
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 05:28:29] -rwx------. 1 boincer umatlas     36292 Nov 20 05:19 runpilot2-wrapper.sh
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:21 queuedata.json
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas       100 Nov 20 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:28:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 14:39 run_atlas
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas       105 Nov 20 14:39 job.xml
[2025-11-21 05:28:29] -rw-r--r--. 2 boincer umatlas 410372819 Nov 20 14:39 EVNT.47493127._000165.pool.root.1
[2025-11-21 05:28:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 14:39 start_atlas.sh
[2025-11-21 05:28:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 14:39 shared
[2025-11-21 05:28:29] -rw-r--r--. 2 boincer umatlas    590105 Nov 20 14:39 input.tar.gz
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas         0 Nov 20 14:39 boinc_lockfile
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas      2786 Nov 20 14:39 pandaJob.out
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas        57 Nov 20 14:39 setup.sh.local
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas    989464 Nov 20 14:40 agis_schedconf.cvmfs.json
[2025-11-21 05:28:29] drwx------. 5 boincer umatlas      4096 Nov 20 14:40 pilot3
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas       532 Nov 21 05:20 boinc_task_state.xml
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas      6660 Nov 21 05:21 init_data.xml
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas 917025754 Nov 21 05:26 HITS.47523449._001644.pool.root.1
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas        95 Nov 21 05:27 pilot_heartbeat.json
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas      1052 Nov 21 05:27 memory_monitor_summary.json
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas   1526164 Nov 21 05:27 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas   2170590 Nov 21 05:27 log.47523449._001644.job.log.tgz.1
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas      8624 Nov 21 05:27 heartbeat.json
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 05:28 boinc_mmap_file
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas        29 Nov 21 05:28 wrapper_checkpoint.txt
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas      4823 Nov 21 05:28 pilotlog.txt
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas   6981691 Nov 21 05:28 log.47523449._001644.job.log.1
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas       353 Nov 21 05:28 output.list
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas       620 Nov 21 05:28 runtime_log
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas   9175040 Nov 21 05:28 result.tar.gz
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 05:28 runtime_log.err
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas       660 Nov 21 05:28 BdKMDmYwGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXMHKDm1toWdn.diag
[2025-11-21 05:28:29] -rw-r--r--. 1 boincer umatlas     21158 Nov 21 05:28 stderr.txt
[2025-11-21 05:28:29] HITS file was successfully produced:
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas 917025754 Nov 21 05:26 shared/HITS.pool.root.1
[2025-11-21 05:28:29]  *** Contents of shared directory: ***
[2025-11-21 05:28:29] total 1305856
[2025-11-21 05:28:29] -rw-r--r--. 2 boincer umatlas 410372819 Nov 20 14:39 ATLAS.root_0
[2025-11-21 05:28:29] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 14:39 start_atlas.sh
[2025-11-21 05:28:29] -rw-r--r--. 2 boincer umatlas    590105 Nov 20 14:39 input.tar.gz
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas 917025754 Nov 21 05:26 HITS.pool.root.1
[2025-11-21 05:28:29] -rw-------. 1 boincer umatlas   9175040 Nov 21 05:28 result.tar.gz
05:28:30 (3761941): run_atlas exited; CPU time 283946.383878
05:28:30 (3761941): called boinc_finish(0)

</stderr_txt>
]]>

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