Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:41:12 (29989): wrapper (7.7.26015): starting
22:41:12 (29989): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:41:12] Arguments: --nthreads 8
[2025-11-22 22:41:12] Threads: 8
[2025-11-22 22:41:12] Checking for CVMFS
[2025-11-22 22:41:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:41:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:41:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:41:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:41:15] 2.11.2.0 19767 75558 91872 153185 1 236 14920818 25165824 4538 130560 2 22319724 99.868 13575628 2315 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 22:41:15] CVMFS is ok
[2025-11-22 22:41:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:41:15] Checking for apptainer binary...
[2025-11-22 22:41:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:41:15] Running /usr/bin/apptainer --version
[2025-11-22 22:41:15] apptainer version 1.3.2-1.el7
[2025-11-22 22:41:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:41:26] cg-vwn305.simple-grid.lan
[2025-11-22 22:41:26] apptainer works
[2025-11-22 22:41:26] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:41:26] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:41:26] Starting ATLAS job with PandaID=6893840011
[2025-11-22 22:41:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 00:38:12]  *** The last 200 lines of the pilot log: ***
[2025-11-24 00:38:12] 2025-11-23 23:37:27,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:38:12] 2025-11-23 23:37:27,606 | INFO     | time since job start (93144s) is within the limit (172800.0s)
[2025-11-24 00:38:12] 2025-11-23 23:37:29,612 | INFO     | time since job start (93146s) is within the limit (172800.0s)
[2025-11-24 00:38:12] 2025-11-23 23:37:29,627 | INFO     | monitor loop #6257: job 0:6893840011 is in state 'finished'
[2025-11-24 00:38:12] 2025-11-23 23:37:29,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:38:12] 2025-11-23 23:37:31,619 | INFO     | time since job start (93148s) is within the limit (172800.0s)
[2025-11-24 00:38:12] 2025-11-23 23:37:32,132 | INFO     | monitor loop #6258: job 0:6893840011 is in state 'finished'
[2025-11-24 00:38:12] 2025-11-23 23:37:32,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:38:12] 2025-11-23 23:37:33,631 | INFO     | time since job start (93150s) is within the limit (172800.0s)
[2025-11-24 00:38:12] 2025-11-23 23:37:34,644 | INFO     | monitor loop #6259: job 0:6893840011 is in state 'finished'
[2025-11-24 00:38:12] 2025-11-23 23:37:34,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:38:12] 2025-11-23 23:37:35,641 | INFO     | time since job start (93152s) is within the limit (172800.0s)
[2025-11-24 00:38:12] 2025-11-23 23:37:36,667 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 00:38:12] 2025-11-23 23:37:36,668 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.9959999999996
[2025-11-24 00:38:12] 2025-11-23 23:37:36,670 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6893840011/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 00:38:12] 2025-11-23 23:37:36,670 | INFO     | extracted standard info from prmon json
[2025-11-24 00:38:12] 2025-11-23 23:37:36,670 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 00:38:12] 2025-11-23 23:37:36,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 00:38:12] 2025-11-23 23:37:36,700 | INFO     | fitting pss+swap vs Time
[2025-11-24 00:38:12] 2025-11-23 23:37:36,703 | INFO     | sum of square deviations: 1084662133700.1802
[2025-11-24 00:38:12] 2025-11-23 23:37:36,823 | INFO     | sum of deviations: 4353901550698.217
[2025-11-24 00:38:12] 2025-11-23 23:37:36,823 | INFO     | mean x: 1763894666.676548
[2025-11-24 00:38:12] 2025-11-23 23:37:36,823 | INFO     | mean y: 2838538.874176548
[2025-11-24 00:38:12] 2025-11-23 23:37:36,824 | INFO     | intersect: -7077544822.820808
[2025-11-24 00:38:12] 2025-11-23 23:37:36,826 | INFO     | chi2: 28.348996531361518
[2025-11-24 00:38:12] 2025-11-23 23:37:36,828 | INFO     | sum of square deviations: 1073979957195.741
[2025-11-24 00:38:12] 2025-11-23 23:37:37,037 | INFO     | sum of deviations: 4852242031897.375
[2025-11-24 00:38:12] 2025-11-23 23:37:37,038 | INFO     | mean x: 1763894514.1804361
[2025-11-24 00:38:12] 2025-11-23 23:37:37,038 | INFO     | mean y: 2845651.7019167216
[2025-11-24 00:38:12] 2025-11-23 23:37:37,038 | INFO     | intersect: -7966430724.63515
[2025-11-24 00:38:12] 2025-11-23 23:37:37,040 | INFO     | chi2: 25.173124888250772
[2025-11-24 00:38:12] 2025-11-23 23:37:37,040 | INFO     | current chi2=25.173124888250772 (change=11.202765641448325 %)
[2025-11-24 00:38:12] 2025-11-23 23:37:37,040 | INFO     | right removable region: 1512
[2025-11-24 00:38:12] 2025-11-23 23:37:37,042 | INFO     | sum of square deviations: 1073978867735.7407
[2025-11-24 00:38:12] 2025-11-23 23:37:37,157 | INFO     | monitor loop #6260: job 0:6893840011 is in state 'finished'
[2025-11-24 00:38:12] 2025-11-23 23:37:37,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 00:38:12] 2025-11-23 23:37:37,206 | INFO     | sum of deviations: 3709995095395.6284
[2025-11-24 00:38:12] 2025-11-23 23:37:37,207 | INFO     | mean x: 1763894819.1804361
[2025-11-24 00:38:12] 2025-11-23 23:37:37,207 | INFO     | mean y: 2847730.305353602
[2025-11-24 00:38:12] 2025-11-23 23:37:37,207 | INFO     | intersect: -6090420326.029793
[2025-11-24 00:38:12] 2025-11-23 23:37:37,209 | INFO     | chi2: 23.460174989625557
[2025-11-24 00:38:12] 2025-11-23 23:37:37,209 | INFO     | current chi2=23.460174989625557 (change=17.24513083321177 %)
[2025-11-24 00:38:12] 2025-11-23 23:37:37,209 | INFO     | left removable region: 10
[2025-11-24 00:38:12] 2025-11-23 23:37:37,230 | INFO     | sum of square deviations: 1050724376929.8008
[2025-11-24 00:38:12] 2025-11-23 23:37:37,312 | INFO     | PID=1367 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 00:38:12] 2025-11-23 23:37:37,312 | INFO     | .. there are 9 such processes running
[2025-11-24 00:38:12] 2025-11-23 23:37:37,329 | INFO     | sum of deviations: 3722674423472.3066
[2025-11-24 00:38:12] 2025-11-23 23:37:37,330 | INFO     | mean x: 1763894788.6890812
[2025-11-24 00:38:12] 2025-11-23 23:37:37,330 | INFO     | mean y: 2864718.555259654
[2025-11-24 00:38:12] 2025-11-23 23:37:37,330 | INFO     | intersect: -6246543936.772469
[2025-11-24 00:38:12] 2025-11-23 23:37:37,332 | INFO     | chi2: 15.755428808096031
[2025-11-24 00:38:12] 2025-11-23 23:37:37,333 | INFO     | current memory leak: 3.54 B/s (using 1502 data points, chi2=15.76)
[2025-11-24 00:38:12] 2025-11-23 23:37:37,335 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 00:38:12] 2025-11-23 23:37:37,335 | INFO     | ..............................
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . Timing measurements:
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . get job = 0 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . initial setup = 12 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . payload setup = 143 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . stage-in = 0 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . payload execution = 92705 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . stage-out = 7 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | . log creation = 2 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,336 | INFO     | ..............................
[2025-11-24 00:38:12] 2025-11-23 23:37:37,707 | INFO     | 
[2025-11-24 00:38:12] 2025-11-23 23:37:37,707 | INFO     | job summary report
[2025-11-24 00:38:12] 2025-11-23 23:37:37,707 | INFO     | --------------------------------------------------
[2025-11-24 00:38:12] 2025-11-23 23:37:37,707 | INFO     | PanDA job id: 6893840011
[2025-11-24 00:38:12] 2025-11-23 23:37:37,707 | INFO     | task id: 47523449
[2025-11-24 00:38:12] 2025-11-23 23:37:37,707 | INFO     | errors: (none)
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | pilot state: finished 
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | transexitcode: 0
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | exeerrorcode: 0
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | exeerrordiag: 
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | exitcode: 0
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | exitmsg: OK
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | cpuconsumptiontime: 341907 s
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | nevents: 1000
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | neventsw: 0
[2025-11-24 00:38:12] 2025-11-23 23:37:37,708 | INFO     | pid: 7950
[2025-11-24 00:38:12] 2025-11-23 23:37:37,709 | INFO     | pgrp: 7950
[2025-11-24 00:38:12] 2025-11-23 23:37:37,709 | INFO     | corecount: 8
[2025-11-24 00:38:12] 2025-11-23 23:37:37,709 | INFO     | event service: False
[2025-11-24 00:38:12] 2025-11-23 23:37:37,709 | INFO     | sizes: {0: 2297979, 1: 2298664, 2: 2298863, 3: 2298863, 14: 2298891, 24: 2298919, 35: 2299075, 46: 2299103, 57: 2299131, 67: 2299159, 78: 2299187, 89: 2299523, 92:
[2025-11-24 00:38:12] 2025-11-23 23:37:37,709 | INFO     | --------------------------------------------------
[2025-11-24 00:38:12] 2025-11-23 23:37:37,709 | INFO     | 
[2025-11-24 00:38:12] 2025-11-23 23:37:37,709 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-24 00:38:12] 2025-11-23 23:37:38,089 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,089 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,089 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,089 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,089 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,090 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | job 6893840011 has completed (purged errors)
[2025-11-24 00:38:12] 2025-11-23 23:37:38,091 | INFO     | overall cleanup function is called
[2025-11-24 00:38:12] 2025-11-23 23:37:39,115 | INFO     | --- collectZombieJob: --- 10, [7950]
[2025-11-24 00:38:12] 2025-11-23 23:37:39,115 | INFO     | zombie collector waiting for pid 7950
[2025-11-24 00:38:12] 2025-11-23 23:37:39,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 00:38:12] 2025-11-23 23:37:39,115 | INFO     | collected zombie processes
[2025-11-24 00:38:12] 2025-11-23 23:37:39,115 | INFO     | will attempt to kill all subprocesses of pid=7950
[2025-11-24 00:38:12] 2025-11-23 23:37:39,218 | INFO     | process IDs to be killed: [7950] (in reverse order)
[2025-11-24 00:38:12] 2025-11-23 23:37:40,151 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 00:38:12] 2025-11-23 23:37:40,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 00:38:12] 2025-11-23 23:37:40,155 | INFO     | did not find any defunct processes belonging to 7950
[2025-11-24 00:38:12] 2025-11-23 23:37:40,161 | INFO     | did not find any defunct processes belonging to 7950
[2025-11-24 00:38:12] 2025-11-23 23:37:40,221 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 00:38:12] 2025-11-23 23:37:40,221 | INFO     | ready for new job
[2025-11-24 00:38:12] 2025-11-23 23:37:40,222 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 00:38:12] 2025-11-23 23:37:40,228 | INFO     | ***************************************
[2025-11-24 00:38:12] 2025-11-23 23:37:40,229 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 00:38:12] 2025-11-23 23:37:40,229 | INFO     | ***************************************
[2025-11-24 00:38:12] 2025-11-23 23:37:40,229 | INFO     | 
[2025-11-24 00:38:12] 2025-11-23 23:37:40,230 | INFO     | pilot is running in a VM
[2025-11-24 00:38:12] 2025-11-23 23:37:40,230 | INFO     | architecture information:
[2025-11-24 00:38:12] 2025-11-23 23:37:40,247 | INFO     | executing command: cat /etc/os-release
[2025-11-24 00:38:12] 2025-11-23 23:37:40,605 | INFO     | cat /etc/os-release:
[2025-11-24 00:38:12] NAME="CentOS Linux"
[2025-11-24 00:38:12] VERSION="7 (Core)"
[2025-11-24 00:38:12] ID="centos"
[2025-11-24 00:38:12] ID_LIKE="rhel fedora"
[2025-11-24 00:38:12] VERSION_ID="7"
[2025-11-24 00:38:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 00:38:12] ANSI_COLOR="0;31"
[2025-11-24 00:38:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 00:38:12] HOME_URL="https://www.centos.org/"
[2025-11-24 00:38:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 00:38:12] 
[2025-11-24 00:38:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 00:38:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 00:38:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 00:38:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 00:38:12] 
[2025-11-24 00:38:12] 2025-11-23 23:37:40,605 | INFO     | ***************************************
[2025-11-24 00:38:12] 2025-11-23 23:37:41,109 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-24 00:38:12] 2025-11-23 23:37:41,371 | INFO     | sufficient remaining disk space (495327379456 B)
[2025-11-24 00:38:12] 2025-11-23 23:37:41,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 00:38:12] 2025-11-23 23:37:41,371 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 00:38:12] 2025-11-23 23:37:41,372 | INFO     | update_server=False
[2025-11-24 00:38:12] 2025-11-23 23:37:41,372 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 00:38:12] 2025-11-23 23:37:41,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:38:12] 2025-11-23 23:37:41,373 | INFO     | aborting loop
[2025-11-24 00:38:12] 2025-11-23 23:37:41,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 00:38:12] 2025-11-23 23:37:41,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 00:38:12] 2025-11-23 23:37:41,804 | INFO     | all data control threads have been joined
[2025-11-24 00:38:12] 2025-11-23 23:37:41,835 | INFO     | all payload control threads have been joined
[2025-11-24 00:38:12] 2025-11-23 23:37:42,378 | INFO     | [job] retrieve thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:42,379 | INFO     | [job] job monitor thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:42,417 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:42,491 | INFO     | [data] copytool_in thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:42,496 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 00:38:12] 2025-11-23 23:37:42,742 | INFO     | all job control threads have been joined
[2025-11-24 00:38:12] 2025-11-23 23:37:42,750 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:42,810 | INFO     | [data] control thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:42,841 | INFO     | [payload] control thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:42,940 | INFO     | [job] validate thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:43,092 | INFO     | [payload] failed_post thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:43,125 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:43,287 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:43,387 | INFO     | [data] copytool_out thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:43,502 | INFO     | [job] queue monitor thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:43,749 | INFO     | [job] control thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:43,772 | INFO     | [payload] validate_post thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:45,114 | INFO     | [monitor] cgroup control has ended
[2025-11-24 00:38:12] 2025-11-23 23:37:45,770 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 00:38:12] 2025-11-23 23:37:46,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140070266042176)>', '<ExcThread(monitor, started 140069654476544)>']
[2025-11-24 00:38:12] 2025-11-23 23:37:51,665 | INFO     | all workflow threads have been joined
[2025-11-24 00:38:12] 2025-11-23 23:37:51,665 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 00:38:12] 2025-11-23 23:37:51,665 | INFO     | traces error code: 0
[2025-11-24 00:38:12] 2025-11-23 23:37:51,666 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 00:38:12] 2025-11-23 23:38:09,534 | INFO     | PID=1367 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 00:38:12] 2025-11-23 23:38:09,535 | INFO     | .. there are 9 such processes running
[2025-11-24 00:38:12] 2025-11-23 23:38:09,535 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 00:38:12] 2025-11-23 23:38:09,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 00:38:12] 2025-11-23 23:38:09,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 00:38:12] 2025-11-23 23:38:09,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 00:38:12] 2025-11-23 23:38:09,535 | INFO     | [monitor] control thread has ended
[2025-11-24 00:38:12] 2025-11-23 23:38:09,910 [wrapper] ==== pilot stdout END ====
[2025-11-24 00:38:12] 2025-11-23 23:38:09,974 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 00:38:12] 2025-11-23 23:38:10,039 [wrapper] pilotpid: 1367
[2025-11-24 00:38:12] 2025-11-23 23:38:10,152 [wrapper] Pilot exit status: 0
[2025-11-24 00:38:12] 2025-11-23 23:38:10,583 [wrapper] pandaids: 6893840011
[2025-11-24 00:38:12] 2025-11-23 23:38:11,303 [wrapper] cleanup supervisor_pilot 31719 1368
[2025-11-24 00:38:12] 2025-11-23 23:38:11,403 [wrapper] Test setup, not cleaning
[2025-11-24 00:38:12] 2025-11-23 23:38:11,463 [wrapper] apfmon messages muted
[2025-11-24 00:38:12] 2025-11-23 23:38:11,508 [wrapper] ==== wrapper stdout END ====
[2025-11-24 00:38:12] 2025-11-23 23:38:11,611 [wrapper] ==== wrapper stderr END ====
[2025-11-24 00:38:12]  *** Error codes and diagnostics ***
[2025-11-24 00:38:12]     "exeErrorCode": 0,
[2025-11-24 00:38:12]     "exeErrorDiag": "",
[2025-11-24 00:38:12]     "pilotErrorCode": 0,
[2025-11-24 00:38:12]     "pilotErrorDiag": "",
[2025-11-24 00:38:12]  *** Listing of results directory ***
[2025-11-24 00:38:12] total 1342396
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 00:38:12] -rwx------. 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:20 queuedata.json
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc       100 Nov 22 22:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 00:38:12] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 22:41 run_atlas
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc       105 Nov 22 22:41 job.xml
[2025-11-24 00:38:12] -rw-r--r--. 2 boinc boinc 408423559 Nov 22 22:41 EVNT.47493127._000161.pool.root.1
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc      6392 Nov 22 22:41 init_data.xml
[2025-11-24 00:38:12] -rw-r--r--. 2 boinc boinc     15847 Nov 22 22:41 start_atlas.sh
[2025-11-24 00:38:12] drwxrwx--x. 2 boinc boinc        68 Nov 22 22:41 shared
[2025-11-24 00:38:12] -rw-r--r--. 2 boinc boinc    590104 Nov 22 22:41 input.tar.gz
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc         0 Nov 22 22:41 boinc_lockfile
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc      2786 Nov 22 22:41 pandaJob.out
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc    989768 Nov 22 22:44 agis_schedconf.cvmfs.json
[2025-11-24 00:38:12] drwx------. 5 boinc boinc      4096 Nov 22 22:45 pilot3
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc       533 Nov 24 00:12 boinc_task_state.xml
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc 932199861 Nov 24 00:34 HITS.47523449._001604.pool.root.1
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc      1030 Nov 24 00:35 memory_monitor_summary.json
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc   1526164 Nov 24 00:35 agis_ddmendpoints.agis.ALL.json
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc   2598129 Nov 24 00:35 log.47523449._001604.job.log.tgz.1
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc        95 Nov 24 00:37 pilot_heartbeat.json
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc      8641 Nov 24 00:37 heartbeat.json
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc        29 Nov 24 00:37 wrapper_checkpoint.txt
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc      8192 Nov 24 00:37 boinc_mmap_file
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc       819 Nov 24 00:38 pilotlog.txt
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc  12443579 Nov 24 00:38 log.47523449._001604.job.log.1
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc       353 Nov 24 00:38 output.list
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc       620 Nov 24 00:38 runtime_log
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc  15063040 Nov 24 00:38 result.tar.gz
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc       662 Nov 24 00:38 zhHLDmsvGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkLHKDmno1FSn.diag
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc      8817 Nov 24 00:38 runtime_log.err
[2025-11-24 00:38:12] -rw-r--r--. 1 boinc boinc     21523 Nov 24 00:38 stderr.txt
[2025-11-24 00:38:12] HITS file was successfully produced:
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc 932199861 Nov 24 00:34 shared/HITS.pool.root.1
[2025-11-24 00:38:12]  *** Contents of shared directory: ***
[2025-11-24 00:38:12] total 1324512
[2025-11-24 00:38:12] -rw-r--r--. 2 boinc boinc 408423559 Nov 22 22:41 ATLAS.root_0
[2025-11-24 00:38:12] -rw-r--r--. 2 boinc boinc     15847 Nov 22 22:41 start_atlas.sh
[2025-11-24 00:38:12] -rw-r--r--. 2 boinc boinc    590104 Nov 22 22:41 input.tar.gz
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc 932199861 Nov 24 00:34 HITS.pool.root.1
[2025-11-24 00:38:12] -rw-------. 1 boinc boinc  15063040 Nov 24 00:38 result.tar.gz
00:38:13 (29989): run_atlas exited; CPU time 342533.245151
00:38:13 (29989): called boinc_finish(0)

</stderr_txt>
]]>

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