Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:00:41 (4864): wrapper (7.7.26015): starting
02:00:41 (4864): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:00:41] Arguments: --nthreads 8
[2025-11-23 02:00:41] Threads: 8
[2025-11-23 02:00:41] Checking for CVMFS
[2025-11-23 02:00:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:00:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:00:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:00:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:00:43] 2.11.2.0 13026 280327 140252 153191 0 236 20613049 25165825 4543 130560 2 137002134 99.885 75993466 3385 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 02:00:43] CVMFS is ok
[2025-11-23 02:00:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:00:43] Checking for apptainer binary...
[2025-11-23 02:00:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:00:43] Running /usr/bin/apptainer --version
[2025-11-23 02:00:44] apptainer version 1.3.2-1.el7
[2025-11-23 02:00:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:00:47] cg-vwn329.simple-grid.lan
[2025-11-23 02:00:47] apptainer works
[2025-11-23 02:00:47] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:00:47] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:00:47] Starting ATLAS job with PandaID=6893840003
[2025-11-23 02:00:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:16:37]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:16:37] 2025-11-24 02:15:49,060 | INFO     | time since job start (90670s) is within the limit (172800.0s)
[2025-11-24 03:16:37] 2025-11-24 02:15:51,067 | INFO     | time since job start (90672s) is within the limit (172800.0s)
[2025-11-24 03:16:37] 2025-11-24 02:15:51,442 | INFO     | monitor loop #6087: job 0:6893840003 is in state 'finished'
[2025-11-24 03:16:37] 2025-11-24 02:15:51,442 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:16:37] 2025-11-24 02:15:53,074 | INFO     | time since job start (90674s) is within the limit (172800.0s)
[2025-11-24 03:16:37] 2025-11-24 02:15:53,952 | INFO     | monitor loop #6088: job 0:6893840003 is in state 'finished'
[2025-11-24 03:16:37] 2025-11-24 02:15:53,952 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:16:37] 2025-11-24 02:15:55,083 | INFO     | time since job start (90676s) is within the limit (172800.0s)
[2025-11-24 03:16:37] 2025-11-24 02:15:56,457 | INFO     | monitor loop #6089: job 0:6893840003 is in state 'finished'
[2025-11-24 03:16:37] 2025-11-24 02:15:56,457 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:16:37] 2025-11-24 02:15:57,096 | INFO     | time since job start (90678s) is within the limit (172800.0s)
[2025-11-24 03:16:37] 2025-11-24 02:15:58,961 | INFO     | monitor loop #6090: job 0:6893840003 is in state 'finished'
[2025-11-24 03:16:37] 2025-11-24 02:15:58,961 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:16:37] 2025-11-24 02:15:59,103 | INFO     | time since job start (90680s) is within the limit (172800.0s)
[2025-11-24 03:16:37] 2025-11-24 02:16:00,326 | INFO     | PID=8647 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:16:37] 2025-11-24 02:16:00,327 | INFO     | .. there are 9 such processes running
[2025-11-24 03:16:37] 2025-11-24 02:16:00,427 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:16:37] 2025-11-24 02:16:00,428 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:16:37] 2025-11-24 02:16:00,430 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6893840003/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:16:37] 2025-11-24 02:16:00,431 | INFO     | extracted standard info from prmon json
[2025-11-24 03:16:37] 2025-11-24 02:16:00,431 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:16:37] 2025-11-24 02:16:00,431 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:16:37] 2025-11-24 02:16:00,462 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:16:37] 2025-11-24 02:16:00,464 | INFO     | sum of square deviations: 999127220456.2656
[2025-11-24 03:16:37] 2025-11-24 02:16:00,530 | INFO     | sum of deviations: 4010235671861.46
[2025-11-24 03:16:37] 2025-11-24 02:16:00,531 | INFO     | mean x: 1763905423.1184833
[2025-11-24 03:16:37] 2025-11-24 02:16:00,531 | INFO     | mean y: 2832538.1117129317
[2025-11-24 03:16:37] 2025-11-24 02:16:00,531 | INFO     | intersect: -7077023064.610561
[2025-11-24 03:16:37] 2025-11-24 02:16:00,533 | INFO     | chi2: 26.12713782532228
[2025-11-24 03:16:37] 2025-11-24 02:16:00,535 | INFO     | sum of square deviations: 989015199819.9886
[2025-11-24 03:16:37] 2025-11-24 02:16:00,596 | INFO     | sum of deviations: 4492960176428.033
[2025-11-24 03:16:37] 2025-11-24 02:16:00,596 | INFO     | mean x: 1763905270.6222825
[2025-11-24 03:16:37] 2025-11-24 02:16:00,596 | INFO     | mean y: 2839816.5414402173
[2025-11-24 03:16:37] 2025-11-24 02:16:00,596 | INFO     | intersect: -8010339492.876547
[2025-11-24 03:16:37] 2025-11-24 02:16:00,598 | INFO     | chi2: 23.014220729002012
[2025-11-24 03:16:37] 2025-11-24 02:16:00,598 | INFO     | current chi2=23.014220729002012 (change=11.914497168163765 %)
[2025-11-24 03:16:37] 2025-11-24 02:16:00,599 | INFO     | right removable region: 1471
[2025-11-24 03:16:37] 2025-11-24 02:16:00,601 | INFO     | sum of square deviations: 989014192099.9882
[2025-11-24 03:16:37] 2025-11-24 02:16:00,667 | INFO     | sum of deviations: 3374820109927.6753
[2025-11-24 03:16:37] 2025-11-24 02:16:00,667 | INFO     | mean x: 1763905575.6222825
[2025-11-24 03:16:37] 2025-11-24 02:16:00,667 | INFO     | mean y: 2842120.1073369565
[2025-11-24 03:16:37] 2025-11-24 02:16:00,667 | INFO     | intersect: -6016145328.377935
[2025-11-24 03:16:37] 2025-11-24 02:16:00,669 | INFO     | chi2: 21.04233365236252
[2025-11-24 03:16:37] 2025-11-24 02:16:00,670 | INFO     | current chi2=21.04233365236252 (change=19.46177268614397 %)
[2025-11-24 03:16:37] 2025-11-24 02:16:00,670 | INFO     | left removable region: 10
[2025-11-24 03:16:37] 2025-11-24 02:16:00,672 | INFO     | sum of square deviations: 967007413260.0338
[2025-11-24 03:16:37] 2025-11-24 02:16:00,732 | INFO     | sum of deviations: 3385945753458.2085
[2025-11-24 03:16:37] 2025-11-24 02:16:00,732 | INFO     | mean x: 1763905545.1307323
[2025-11-24 03:16:37] 2025-11-24 02:16:00,733 | INFO     | mean y: 2859678.5119780973
[2025-11-24 03:16:37] 2025-11-24 02:16:00,733 | INFO     | intersect: -6173399580.868439
[2025-11-24 03:16:37] 2025-11-24 02:16:00,735 | INFO     | chi2: 13.246245735400876
[2025-11-24 03:16:37] 2025-11-24 02:16:00,735 | INFO     | current memory leak: 3.50 B/s (using 1461 data points, chi2=13.25)
[2025-11-24 03:16:37] 2025-11-24 02:16:00,737 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | ..............................
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . Timing measurements:
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . get job = 0 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . initial setup = 11 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . payload setup = 172 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . stage-in = 0 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . payload execution = 90201 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . stage-out = 5 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | . log creation = 2 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,738 | INFO     | ..............................
[2025-11-24 03:16:37] 2025-11-24 02:16:00,877 | INFO     | 
[2025-11-24 03:16:37] 2025-11-24 02:16:00,877 | INFO     | job summary report
[2025-11-24 03:16:37] 2025-11-24 02:16:00,877 | INFO     | --------------------------------------------------
[2025-11-24 03:16:37] 2025-11-24 02:16:00,877 | INFO     | PanDA job id: 6893840003
[2025-11-24 03:16:37] 2025-11-24 02:16:00,877 | INFO     | task id: 47523449
[2025-11-24 03:16:37] 2025-11-24 02:16:00,877 | INFO     | errors: (none)
[2025-11-24 03:16:37] 2025-11-24 02:16:00,877 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | pilot state: finished 
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | transexitcode: 0
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | exeerrorcode: 0
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | exeerrordiag: 
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | exitcode: 0
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | exitmsg: OK
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | cpuconsumptiontime: 334613 s
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | nevents: 1000
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | neventsw: 0
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | pid: 15250
[2025-11-24 03:16:37] 2025-11-24 02:16:00,878 | INFO     | pgrp: 15250
[2025-11-24 03:16:37] 2025-11-24 02:16:00,879 | INFO     | corecount: 8
[2025-11-24 03:16:37] 2025-11-24 02:16:00,879 | INFO     | event service: False
[2025-11-24 03:16:37] 2025-11-24 02:16:00,879 | INFO     | sizes: {0: 2298636, 1: 2298835, 2: 2298835, 12: 2298863, 23: 2298891, 34: 2298919, 45: 2299075, 55: 2299103, 66: 2299131, 77: 2299159, 88: 2299215, 99: 2299523, 10
[2025-11-24 03:16:37] 2025-11-24 02:16:00,879 | INFO     | --------------------------------------------------
[2025-11-24 03:16:37] 2025-11-24 02:16:00,879 | INFO     | 
[2025-11-24 03:16:37] 2025-11-24 02:16:00,879 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-24 03:16:37] 2025-11-24 02:16:01,258 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:16:37] 2025-11-24 02:16:01,261 | INFO     | job 6893840003 has completed (purged errors)
[2025-11-24 03:16:37] 2025-11-24 02:16:01,261 | INFO     | overall cleanup function is called
[2025-11-24 03:16:37] 2025-11-24 02:16:02,280 | INFO     | --- collectZombieJob: --- 10, [15250]
[2025-11-24 03:16:37] 2025-11-24 02:16:02,280 | INFO     | zombie collector waiting for pid 15250
[2025-11-24 03:16:37] 2025-11-24 02:16:02,280 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:16:37] 2025-11-24 02:16:02,280 | INFO     | collected zombie processes
[2025-11-24 03:16:37] 2025-11-24 02:16:02,280 | INFO     | will attempt to kill all subprocesses of pid=15250
[2025-11-24 03:16:37] 2025-11-24 02:16:02,394 | INFO     | process IDs to be killed: [15250] (in reverse order)
[2025-11-24 03:16:37] 2025-11-24 02:16:03,136 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:16:37] 2025-11-24 02:16:03,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:16:37] 2025-11-24 02:16:03,140 | INFO     | did not find any defunct processes belonging to 15250
[2025-11-24 03:16:37] 2025-11-24 02:16:03,144 | INFO     | did not find any defunct processes belonging to 15250
[2025-11-24 03:16:37] 2025-11-24 02:16:03,167 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:16:37] 2025-11-24 02:16:03,167 | INFO     | ready for new job
[2025-11-24 03:16:37] 2025-11-24 02:16:03,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:16:37] 2025-11-24 02:16:03,175 | INFO     | ***************************************
[2025-11-24 03:16:37] 2025-11-24 02:16:03,175 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:16:37] 2025-11-24 02:16:03,175 | INFO     | ***************************************
[2025-11-24 03:16:37] 2025-11-24 02:16:03,175 | INFO     | 
[2025-11-24 03:16:37] 2025-11-24 02:16:03,176 | INFO     | pilot is running in a VM
[2025-11-24 03:16:37] 2025-11-24 02:16:03,177 | INFO     | architecture information:
[2025-11-24 03:16:37] 2025-11-24 02:16:03,178 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:16:37] 2025-11-24 02:16:03,374 | INFO     | cat /etc/os-release:
[2025-11-24 03:16:37] NAME="CentOS Linux"
[2025-11-24 03:16:37] VERSION="7 (Core)"
[2025-11-24 03:16:37] ID="centos"
[2025-11-24 03:16:37] ID_LIKE="rhel fedora"
[2025-11-24 03:16:37] VERSION_ID="7"
[2025-11-24 03:16:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:16:37] ANSI_COLOR="0;31"
[2025-11-24 03:16:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:16:37] HOME_URL="https://www.centos.org/"
[2025-11-24 03:16:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:16:37] 
[2025-11-24 03:16:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:16:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:16:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:16:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:16:37] 
[2025-11-24 03:16:37] 2025-11-24 02:16:03,374 | INFO     | ***************************************
[2025-11-24 03:16:37] 2025-11-24 02:16:03,878 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-24 03:16:37] 2025-11-24 02:16:04,145 | INFO     | sufficient remaining disk space (495034826752 B)
[2025-11-24 03:16:37] 2025-11-24 02:16:04,145 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:16:37] 2025-11-24 02:16:04,145 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:16:37] 2025-11-24 02:16:04,146 | INFO     | update_server=False
[2025-11-24 03:16:37] 2025-11-24 02:16:04,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:16:37] 2025-11-24 02:16:04,146 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:16:37] 2025-11-24 02:16:04,543 | INFO     | all data control threads have been joined
[2025-11-24 03:16:37] 2025-11-24 02:16:04,561 | INFO     | all payload control threads have been joined
[2025-11-24 03:16:37] 2025-11-24 02:16:04,982 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:16:37] 2025-11-24 02:16:04,982 | INFO     | aborting loop
[2025-11-24 03:16:37] 2025-11-24 02:16:05,152 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,287 | INFO     | all job control threads have been joined
[2025-11-24 03:16:37] 2025-11-24 02:16:05,413 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,496 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,549 | INFO     | [data] control thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,567 | INFO     | [payload] control thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,696 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,707 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,742 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,783 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,874 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:16:37] 2025-11-24 02:16:05,914 | INFO     | [job] validate thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:05,988 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:06,154 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:06,293 | INFO     | [job] control thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:06,899 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:06,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:16:37] 2025-11-24 02:16:10,935 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:16:37] 2025-11-24 02:16:17,015 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:16:37] 2025-11-24 02:16:17,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140409181165376)>', '<ExcThread(monitor, started 140408445200128)>']
[2025-11-24 03:16:37] 2025-11-24 02:16:22,855 | INFO     | all workflow threads have been joined
[2025-11-24 03:16:37] 2025-11-24 02:16:22,855 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:16:37] 2025-11-24 02:16:22,855 | INFO     | traces error code: 0
[2025-11-24 03:16:37] 2025-11-24 02:16:22,855 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:16:37] 2025-11-24 02:16:32,493 | INFO     | PID=8647 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:16:37] 2025-11-24 02:16:32,494 | INFO     | .. there are 9 such processes running
[2025-11-24 03:16:37] 2025-11-24 02:16:32,495 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:16:37] 2025-11-24 02:16:32,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:16:37] 2025-11-24 02:16:32,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:16:37] 2025-11-24 02:16:32,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:16:37] 2025-11-24 02:16:32,495 | INFO     | [monitor] control thread has ended
[2025-11-24 03:16:37] 2025-11-24 02:16:32,893 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:16:37] 2025-11-24 02:16:32,978 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:16:37] 2025-11-24 02:16:33,076 [wrapper] pilotpid: 8647
[2025-11-24 03:16:37] 2025-11-24 02:16:33,197 [wrapper] Pilot exit status: 0
[2025-11-24 03:16:37] 2025-11-24 02:16:33,631 [wrapper] pandaids: 6893840003
[2025-11-24 03:16:37] 2025-11-24 02:16:34,286 [wrapper] cleanup supervisor_pilot 21892 8648
[2025-11-24 03:16:37] 2025-11-24 02:16:34,302 [wrapper] Test setup, not cleaning
[2025-11-24 03:16:37] 2025-11-24 02:16:34,372 [wrapper] apfmon messages muted
[2025-11-24 03:16:37] 2025-11-24 02:16:34,485 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:16:37] 2025-11-24 02:16:34,577 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:16:37]  *** Error codes and diagnostics ***
[2025-11-24 03:16:37]     "exeErrorCode": 0,
[2025-11-24 03:16:37]     "exeErrorDiag": "",
[2025-11-24 03:16:37]     "pilotErrorCode": 0,
[2025-11-24 03:16:37]     "pilotErrorDiag": "",
[2025-11-24 03:16:37]  *** Listing of results directory ***
[2025-11-24 03:16:37] total 1320264
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 03:16:37] -rwx------. 1 boinc boinc     36292 Nov 20 11:19 runpilot2-wrapper.sh
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:20 queuedata.json
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc       100 Nov 23 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:16:37] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 02:00 run_atlas
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc       105 Nov 23 02:00 job.xml
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc      6391 Nov 23 02:00 init_data.xml
[2025-11-24 03:16:37] -rw-r--r--. 2 boinc boinc 411861834 Nov 23 02:00 EVNT.47493127._000160.pool.root.1
[2025-11-24 03:16:37] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:00 start_atlas.sh
[2025-11-24 03:16:37] drwxrwx--x. 2 boinc boinc        68 Nov 23 02:00 shared
[2025-11-24 03:16:37] -rw-r--r--. 2 boinc boinc    590106 Nov 23 02:00 input.tar.gz
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc         0 Nov 23 02:00 boinc_lockfile
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc      2786 Nov 23 02:00 pandaJob.out
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc    989784 Nov 23 02:04 agis_schedconf.cvmfs.json
[2025-11-24 03:16:37] drwx------. 5 boinc boinc      4096 Nov 23 02:04 pilot3
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc       533 Nov 24 02:50 boinc_task_state.xml
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc 906910726 Nov 24 03:12 HITS.47523449._001596.pool.root.1
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc      1031 Nov 24 03:14 memory_monitor_summary.json
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc   1526164 Nov 24 03:14 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc   2559276 Nov 24 03:14 log.47523449._001596.job.log.tgz.1
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc      7950 Nov 24 03:16 heartbeat.json
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:16 boinc_mmap_file
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:16 wrapper_checkpoint.txt
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc       819 Nov 24 03:16 pilotlog.txt
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc        95 Nov 24 03:16 pilot_heartbeat.json
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc  12079469 Nov 24 03:16 log.47523449._001596.job.log.1
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc       353 Nov 24 03:16 output.list
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:16 runtime_log
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc  14653440 Nov 24 03:16 result.tar.gz
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc      8817 Nov 24 03:16 runtime_log.err
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc       662 Nov 24 03:16 7qxKDmsvGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdLHKDmeZZHUm.diag
[2025-11-24 03:16:37] -rw-r--r--. 1 boinc boinc     21502 Nov 24 03:16 stderr.txt
[2025-11-24 03:16:37] HITS file was successfully produced:
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc 906910726 Nov 24 03:12 shared/HITS.pool.root.1
[2025-11-24 03:16:37]  *** Contents of shared directory: ***
[2025-11-24 03:16:37] total 1302776
[2025-11-24 03:16:37] -rw-r--r--. 2 boinc boinc 411861834 Nov 23 02:00 ATLAS.root_0
[2025-11-24 03:16:37] -rw-r--r--. 2 boinc boinc     15847 Nov 23 02:00 start_atlas.sh
[2025-11-24 03:16:37] -rw-r--r--. 2 boinc boinc    590106 Nov 23 02:00 input.tar.gz
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc 906910726 Nov 24 03:12 HITS.pool.root.1
[2025-11-24 03:16:37] -rw-------. 1 boinc boinc  14653440 Nov 24 03:16 result.tar.gz
03:16:38 (4864): run_atlas exited; CPU time 335266.194895
03:16:38 (4864): called boinc_finish(0)

</stderr_txt>
]]>

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