Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:35:31 (16208): wrapper (7.7.26015): starting
01:35:31 (16208): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:35:31] Arguments: --nthreads 8
[2025-11-23 01:35:31] Threads: 8
[2025-11-23 01:35:31] Checking for CVMFS
[2025-11-23 01:35:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:35:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:35:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:35:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:35:33] 2.11.2.0 1205 280163 142464 153191 2 85 14931629 25165825 4632 130560 3 128620086 99.872 72520611 2974 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 01:35:33] CVMFS is ok
[2025-11-23 01:35:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:35:33] Checking for apptainer binary...
[2025-11-23 01:35:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:35:33] Running /usr/bin/apptainer --version
[2025-11-23 01:35:33] apptainer version 1.3.2-1.el7
[2025-11-23 01:35:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:36:14] cg-vwn325.simple-grid.lan
[2025-11-23 01:36:14] apptainer works
[2025-11-23 01:36:14] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:36:14] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:36:14] Starting ATLAS job with PandaID=6893839977
[2025-11-23 01:36:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:14:42]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:14:42] 2025-11-24 02:13:29,787 | INFO     | time since job start (92018s) is within the limit (172800.0s)
[2025-11-24 03:14:42] 2025-11-24 02:13:30,295 | INFO     | monitor loop #6184: job 0:6893839977 is in state 'finished'
[2025-11-24 03:14:42] 2025-11-24 02:13:30,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:14:42] 2025-11-24 02:13:31,796 | INFO     | time since job start (92020s) is within the limit (172800.0s)
[2025-11-24 03:14:42] 2025-11-24 02:13:32,800 | INFO     | monitor loop #6185: job 0:6893839977 is in state 'finished'
[2025-11-24 03:14:42] 2025-11-24 02:13:32,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:14:42] 2025-11-24 02:13:32,969 | INFO     | PID=20033 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:14:42] 2025-11-24 02:13:32,970 | INFO     | .. there are 9 such processes running
[2025-11-24 03:14:42] 2025-11-24 02:13:33,971 | INFO     | time since job start (92022s) is within the limit (172800.0s)
[2025-11-24 03:14:42] 2025-11-24 02:13:35,308 | INFO     | monitor loop #6186: job 0:6893839977 is in state 'finished'
[2025-11-24 03:14:42] 2025-11-24 02:13:35,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:14:42] 2025-11-24 02:13:35,979 | INFO     | time since job start (92024s) is within the limit (172800.0s)
[2025-11-24 03:14:42] 2025-11-24 02:13:37,817 | INFO     | monitor loop #6187: job 0:6893839977 is in state 'finished'
[2025-11-24 03:14:42] 2025-11-24 02:13:37,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:14:42] 2025-11-24 02:13:37,987 | INFO     | time since job start (92026s) is within the limit (172800.0s)
[2025-11-24 03:14:42] 2025-11-24 02:13:39,245 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:14:42] 2025-11-24 02:13:39,247 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:14:42] 2025-11-24 02:13:39,249 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6893839977/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:14:42] 2025-11-24 02:13:39,249 | INFO     | extracted standard info from prmon json
[2025-11-24 03:14:42] 2025-11-24 02:13:39,250 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:14:42] 2025-11-24 02:13:39,250 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:14:42] 2025-11-24 02:13:39,291 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:14:42] 2025-11-24 02:13:39,294 | INFO     | sum of square deviations: 1040263179389.3157
[2025-11-24 03:14:42] 2025-11-24 02:13:39,398 | INFO     | sum of deviations: 4159259308600.621
[2025-11-24 03:14:42] 2025-11-24 02:13:39,398 | INFO     | mean x: 1763904561.3119574
[2025-11-24 03:14:42] 2025-11-24 02:13:39,398 | INFO     | mean y: 2831368.60253841
[2025-11-24 03:14:42] 2025-11-24 02:13:39,398 | INFO     | intersect: -7049745913.260646
[2025-11-24 03:14:42] 2025-11-24 02:13:39,400 | INFO     | chi2: 28.312219871259458
[2025-11-24 03:14:42] 2025-11-24 02:13:39,402 | INFO     | sum of square deviations: 1029875062685.6823
[2025-11-24 03:14:42] 2025-11-24 02:13:39,475 | INFO     | sum of deviations: 4648222797986.157
[2025-11-24 03:14:42] 2025-11-24 02:13:39,476 | INFO     | mean x: 1763904408.8163538
[2025-11-24 03:14:42] 2025-11-24 02:13:39,476 | INFO     | mean y: 2838545.1575067025
[2025-11-24 03:14:42] 2025-11-24 02:13:39,476 | INFO     | intersect: -7958341391.705194
[2025-11-24 03:14:42] 2025-11-24 02:13:39,478 | INFO     | chi2: 25.164869892536792
[2025-11-24 03:14:42] 2025-11-24 02:13:39,478 | INFO     | current chi2=25.164869892536792 (change=11.11657790535044 %)
[2025-11-24 03:14:42] 2025-11-24 02:13:39,478 | INFO     | right removable region: 1491
[2025-11-24 03:14:42] 2025-11-24 02:13:39,480 | INFO     | sum of square deviations: 1029873864645.6823
[2025-11-24 03:14:42] 2025-11-24 02:13:39,552 | INFO     | sum of deviations: 3521672882350.0576
[2025-11-24 03:14:42] 2025-11-24 02:13:39,552 | INFO     | mean x: 1763904713.8163538
[2025-11-24 03:14:42] 2025-11-24 02:13:39,552 | INFO     | mean y: 2840727.4564343165
[2025-11-24 03:14:42] 2025-11-24 02:13:39,552 | INFO     | intersect: -6028864329.777573
[2025-11-24 03:14:42] 2025-11-24 02:13:39,554 | INFO     | chi2: 23.34129757744989
[2025-11-24 03:14:42] 2025-11-24 02:13:39,554 | INFO     | current chi2=23.34129757744989 (change=17.557515152161184 %)
[2025-11-24 03:14:42] 2025-11-24 02:13:39,555 | INFO     | left removable region: 10
[2025-11-24 03:14:42] 2025-11-24 02:13:39,557 | INFO     | sum of square deviations: 1007262758617.4789
[2025-11-24 03:14:42] 2025-11-24 02:13:39,636 | INFO     | sum of deviations: 3531553022533.3574
[2025-11-24 03:14:42] 2025-11-24 02:13:39,636 | INFO     | mean x: 1763904683.326131
[2025-11-24 03:14:42] 2025-11-24 02:13:39,636 | INFO     | mean y: 2858147.1276164753
[2025-11-24 03:14:42] 2025-11-24 02:13:39,637 | INFO     | intersect: -6181548913.063128
[2025-11-24 03:14:42] 2025-11-24 02:13:39,638 | INFO     | chi2: 15.431729986175105
[2025-11-24 03:14:42] 2025-11-24 02:13:39,639 | INFO     | current memory leak: 3.51 B/s (using 1481 data points, chi2=15.43)
[2025-11-24 03:14:42] 2025-11-24 02:13:39,641 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 03:14:42] 2025-11-24 02:13:39,641 | INFO     | ..............................
[2025-11-24 03:14:42] 2025-11-24 02:13:39,641 | INFO     | . Timing measurements:
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | . get job = 0 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | . initial setup = 11 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | . payload setup = 171 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | . stage-in = 0 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | . payload execution = 91444 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | . stage-out = 5 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | . log creation = 2 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,642 | INFO     | ..............................
[2025-11-24 03:14:42] 2025-11-24 02:13:39,784 | INFO     | 
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | job summary report
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | --------------------------------------------------
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | PanDA job id: 6893839977
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | task id: 47523449
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | errors: (none)
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | pilot state: finished 
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | transexitcode: 0
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | exeerrorcode: 0
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | exeerrordiag: 
[2025-11-24 03:14:42] 2025-11-24 02:13:39,785 | INFO     | exitcode: 0
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | exitmsg: OK
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | cpuconsumptiontime: 337933 s
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | nevents: 1000
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | neventsw: 0
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | pid: 26624
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | pgrp: 26624
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | corecount: 8
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | event service: False
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | sizes: {0: 2298581, 1: 2298836, 2: 2298864, 13: 2298864, 23: 2298920, 34: 2298948, 45: 2299104, 56: 2299132, 66: 2299160, 77: 2299188, 88: 2299244, 99: 2299552, 10
[2025-11-24 03:14:42] 2025-11-24 02:13:39,786 | INFO     | --------------------------------------------------
[2025-11-24 03:14:42] 2025-11-24 02:13:39,787 | INFO     | 
[2025-11-24 03:14:42] 2025-11-24 02:13:39,787 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-11-24 03:14:42] 2025-11-24 02:13:40,006 | INFO     | time since job start (92029s) is within the limit (172800.0s)
[2025-11-24 03:14:42] 2025-11-24 02:13:40,414 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,414 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,415 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:14:42] 2025-11-24 02:13:40,416 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,416 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:14:42] 2025-11-24 02:13:40,416 | INFO     | job 6893839977 has completed (purged errors)
[2025-11-24 03:14:42] 2025-11-24 02:13:40,416 | INFO     | overall cleanup function is called
[2025-11-24 03:14:42] 2025-11-24 02:13:41,448 | INFO     | --- collectZombieJob: --- 10, [26624]
[2025-11-24 03:14:42] 2025-11-24 02:13:41,449 | INFO     | zombie collector waiting for pid 26624
[2025-11-24 03:14:42] 2025-11-24 02:13:41,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:14:42] 2025-11-24 02:13:41,449 | INFO     | collected zombie processes
[2025-11-24 03:14:42] 2025-11-24 02:13:41,449 | INFO     | will attempt to kill all subprocesses of pid=26624
[2025-11-24 03:14:42] 2025-11-24 02:13:41,568 | INFO     | process IDs to be killed: [26624] (in reverse order)
[2025-11-24 03:14:42] 2025-11-24 02:13:42,196 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:14:42] 2025-11-24 02:13:42,196 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:14:42] 2025-11-24 02:13:42,200 | INFO     | did not find any defunct processes belonging to 26624
[2025-11-24 03:14:42] 2025-11-24 02:13:42,207 | INFO     | did not find any defunct processes belonging to 26624
[2025-11-24 03:14:42] 2025-11-24 02:13:42,270 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:14:42] 2025-11-24 02:13:42,270 | INFO     | ready for new job
[2025-11-24 03:14:42] 2025-11-24 02:13:42,270 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:14:42] 2025-11-24 02:13:42,277 | INFO     | ***************************************
[2025-11-24 03:14:42] 2025-11-24 02:13:42,278 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:14:42] 2025-11-24 02:13:42,278 | INFO     | ***************************************
[2025-11-24 03:14:42] 2025-11-24 02:13:42,278 | INFO     | 
[2025-11-24 03:14:42] 2025-11-24 02:13:42,278 | INFO     | pilot is running in a VM
[2025-11-24 03:14:42] 2025-11-24 02:13:42,279 | INFO     | architecture information:
[2025-11-24 03:14:42] 2025-11-24 02:13:42,294 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:14:42] 2025-11-24 02:13:42,567 | INFO     | cat /etc/os-release:
[2025-11-24 03:14:42] NAME="CentOS Linux"
[2025-11-24 03:14:42] VERSION="7 (Core)"
[2025-11-24 03:14:42] ID="centos"
[2025-11-24 03:14:42] ID_LIKE="rhel fedora"
[2025-11-24 03:14:42] VERSION_ID="7"
[2025-11-24 03:14:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:14:42] ANSI_COLOR="0;31"
[2025-11-24 03:14:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:14:42] HOME_URL="https://www.centos.org/"
[2025-11-24 03:14:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:14:42] 
[2025-11-24 03:14:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:14:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:14:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:14:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:14:42] 
[2025-11-24 03:14:42] 2025-11-24 02:13:42,567 | INFO     | ***************************************
[2025-11-24 03:14:42] 2025-11-24 02:13:43,070 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-11-24 03:14:42] 2025-11-24 02:13:43,259 | INFO     | sufficient remaining disk space (495051603968 B)
[2025-11-24 03:14:42] 2025-11-24 02:13:43,260 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:14:42] 2025-11-24 02:13:43,260 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:14:42] 2025-11-24 02:13:43,260 | INFO     | update_server=False
[2025-11-24 03:14:42] 2025-11-24 02:13:43,260 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:14:42] 2025-11-24 02:13:43,261 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:14:42] 2025-11-24 02:13:43,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:14:42] 2025-11-24 02:13:43,296 | INFO     | all data control threads have been joined
[2025-11-24 03:14:42] 2025-11-24 02:13:43,476 | INFO     | all payload control threads have been joined
[2025-11-24 03:14:42] 2025-11-24 02:13:43,835 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:14:42] 2025-11-24 02:13:43,835 | INFO     | aborting loop
[2025-11-24 03:14:42] 2025-11-24 02:13:43,924 | INFO     | all job control threads have been joined
[2025-11-24 03:14:42] 2025-11-24 02:13:44,266 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,276 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,303 | INFO     | [data] control thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,376 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,482 | INFO     | [payload] control thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,537 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:14:42] 2025-11-24 02:13:44,837 | INFO     | [job] validate thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,841 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,876 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,930 | INFO     | [job] control thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:44,952 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:45,104 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:45,267 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:45,690 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:45,804 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:13:47,271 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:14:42] 2025-11-24 02:14:13,216 | INFO     | PID=20033 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:14:42] 2025-11-24 02:14:13,216 | INFO     | .. there are 9 such processes running
[2025-11-24 03:14:42] 2025-11-24 02:14:13,216 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:14:42] 2025-11-24 02:14:13,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:14:42] 2025-11-24 02:14:13,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:14:42] 2025-11-24 02:14:32,389 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:14:42] 2025-11-24 02:14:32,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220582127424)>', '<ExcThread(monitor, started 140220003510016)>']
[2025-11-24 03:14:42] 2025-11-24 02:14:33,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:14:42] 2025-11-24 02:14:33,337 | INFO     | [monitor] control thread has ended
[2025-11-24 03:14:42] 2025-11-24 02:14:37,468 | INFO     | all workflow threads have been joined
[2025-11-24 03:14:42] 2025-11-24 02:14:37,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:14:42] 2025-11-24 02:14:37,469 | INFO     | traces error code: 0
[2025-11-24 03:14:42] 2025-11-24 02:14:37,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:14:42] 2025-11-24 02:14:37,860 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:14:42] 2025-11-24 02:14:37,969 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:14:42] 2025-11-24 02:14:38,071 [wrapper] pilotpid: 20033
[2025-11-24 03:14:42] 2025-11-24 02:14:38,121 [wrapper] Pilot exit status: 0
[2025-11-24 03:14:42] 2025-11-24 02:14:38,433 [wrapper] pandaids: 6893839977
[2025-11-24 03:14:42] 2025-11-24 02:14:39,069 [wrapper] cleanup supervisor_pilot 15957 20034
[2025-11-24 03:14:42] 2025-11-24 02:14:39,165 [wrapper] Test setup, not cleaning
[2025-11-24 03:14:42] 2025-11-24 02:14:39,266 [wrapper] apfmon messages muted
[2025-11-24 03:14:42] 2025-11-24 02:14:39,362 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:14:42] 2025-11-24 02:14:39,470 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:14:42]  *** Error codes and diagnostics ***
[2025-11-24 03:14:42]     "exeErrorCode": 0,
[2025-11-24 03:14:42]     "exeErrorDiag": "",
[2025-11-24 03:14:42]     "pilotErrorCode": 0,
[2025-11-24 03:14:42]     "pilotErrorDiag": "",
[2025-11-24 03:14:42]  *** Listing of results directory ***
[2025-11-24 03:14:42] total 1320436
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:17 queuedata.json
[2025-11-24 03:14:42] -rwx------. 1 boinc boinc     36292 Nov 20 11:18 runpilot2-wrapper.sh
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc       100 Nov 23 01:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:14:42] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 01:35 run_atlas
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc       105 Nov 23 01:35 job.xml
[2025-11-24 03:14:42] -rw-r--r--. 2 boinc boinc 409407980 Nov 23 01:35 EVNT.47493127._000157.pool.root.1
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc      6392 Nov 23 01:35 init_data.xml
[2025-11-24 03:14:42] -rw-r--r--. 2 boinc boinc     15847 Nov 23 01:35 start_atlas.sh
[2025-11-24 03:14:42] drwxrwx--x. 2 boinc boinc        68 Nov 23 01:35 shared
[2025-11-24 03:14:42] -rw-r--r--. 2 boinc boinc    590100 Nov 23 01:35 input.tar.gz
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc         0 Nov 23 01:35 boinc_lockfile
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc      2786 Nov 23 01:36 pandaJob.out
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc    989784 Nov 23 01:39 agis_schedconf.cvmfs.json
[2025-11-24 03:14:42] drwx------. 5 boinc boinc      4096 Nov 23 01:39 pilot3
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc       533 Nov 24 02:44 boinc_task_state.xml
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc 909144890 Nov 24 03:08 HITS.47523449._001570.pool.root.1
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc      1031 Nov 24 03:10 memory_monitor_summary.json
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc   1526164 Nov 24 03:10 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc   2566991 Nov 24 03:10 log.47523449._001570.job.log.tgz.1
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc        95 Nov 24 03:13 pilot_heartbeat.json
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc      8634 Nov 24 03:13 heartbeat.json
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:14 boinc_mmap_file
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:14 wrapper_checkpoint.txt
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc      4885 Nov 24 03:14 pilotlog.txt
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc  12264741 Nov 24 03:14 log.47523449._001570.job.log.1
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc       353 Nov 24 03:14 output.list
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:14 runtime_log
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc  14848000 Nov 24 03:14 result.tar.gz
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc      8833 Nov 24 03:14 runtime_log.err
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc       662 Nov 24 03:14 PxaKDm3uGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9IHKDmTomI3m.diag
[2025-11-24 03:14:42] -rw-r--r--. 1 boinc boinc     21511 Nov 24 03:14 stderr.txt
[2025-11-24 03:14:42] HITS file was successfully produced:
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc 909144890 Nov 24 03:08 shared/HITS.pool.root.1
[2025-11-24 03:14:42]  *** Contents of shared directory: ***
[2025-11-24 03:14:42] total 1302752
[2025-11-24 03:14:42] -rw-r--r--. 2 boinc boinc 409407980 Nov 23 01:35 ATLAS.root_0
[2025-11-24 03:14:42] -rw-r--r--. 2 boinc boinc     15847 Nov 23 01:35 start_atlas.sh
[2025-11-24 03:14:42] -rw-r--r--. 2 boinc boinc    590100 Nov 23 01:35 input.tar.gz
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc 909144890 Nov 24 03:08 HITS.pool.root.1
[2025-11-24 03:14:42] -rw-------. 1 boinc boinc  14848000 Nov 24 03:14 result.tar.gz
03:14:44 (16208): run_atlas exited; CPU time 338474.029932
03:14:44 (16208): called boinc_finish(0)

</stderr_txt>
]]>

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