Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:02:27 (2981877): wrapper (7.7.26015): starting
04:02:27 (2981877): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 04:02:27] Arguments: --nthreads 12
[2025-11-20 04:02:27] Threads: 12
[2025-11-20 04:02:27] Checking for CVMFS
[2025-11-20 04:02:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 04:02:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 04:02:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 04:02:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 04:02:27] 2.11.5.0 3414380 19400 319944 153080 0 526 44297074 45568000 16509 130560 0 176566828 99.786 109940282 25908 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-20 04:02:27] CVMFS is ok
[2025-11-20 04:02:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 04:02:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 04:02:27] Further information can be found at the LHC@home message board.
[2025-11-20 04:02:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 04:02:27] Checking for apptainer binary...
[2025-11-20 04:02:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 04:02:27] Running /usr/bin/apptainer --version
[2025-11-20 04:02:27] apptainer version 1.4.1-1.el9
[2025-11-20 04:02:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 04:02:27] wns0077.triumf.lcg
[2025-11-20 04:02:27] apptainer works
[2025-11-20 04:02:27] Set ATHENA_PROC_NUMBER=12
[2025-11-20 04:02:27] Set ATHENA_CORE_NUMBER=12
[2025-11-20 04:02:27] Starting ATLAS job with PandaID=6893839060
[2025-11-20 04:02:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 04:07:46]  *** The last 200 lines of the pilot log: ***
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 04:07:46] 2025-11-20 12:06:39,460 | WARNING  | wrong length of table data, x=[1763640193.0, 1763640254.0], y=[1450.0, 567565.0] (must be same and length>=4)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,460 | INFO     | could have reported an average CPU frequency of 2595 MHz (4 samples)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | ..............................
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . Timing measurements:
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . get job = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . initial setup = 3 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . payload setup = 7 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . stage-in = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . payload execution = 83 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . stage-out = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . log creation = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | ..............................
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893839060/pilotlog.txt
[2025-11-20 04:07:46] 2025-11-20 12:06:39,475 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-20 04:07:46] - Log from pilotlog.txt -
[2025-11-20 04:07:46] 2025-11-20 12:06:39,458 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893839060/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | INFO     | extracted standard info from prmon json
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 04:07:46] 2025-11-20 12:06:39,460 | WARNING  | wrong length of table data, x=[1763640193.0, 1763640254.0], y=[1450.0, 567565.0] (must be same and length>=4)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,460 | INFO     | could have reported an average CPU frequency of 2595 MHz (4 samples)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | ..............................
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . Timing measurements:
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . get job = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . initial setup = 3 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . payload setup = 7 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . stage-in = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . payload execution = 83 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . stage-out = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . log creation = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | ..............................
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893839060/pilotlog.txt
[2025-11-20 04:07:46] 2025-11-20 12:06:39,476 | WARNING  | 
[2025-11-20 04:07:46] [begin log extracts]
[2025-11-20 04:07:46] - Log from pilotlog.txt -
[2025-11-20 04:07:46] 2025-11-20 12:06:39,458 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6893839060/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | INFO     | extracted standard info from prmon json
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-20 04:07:46] 2025-11-20 12:06:39,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-20 04:07:46] 2025-11-20 12:06:39,460 | WARNING  | wrong length of table data, x=[1763640193.0, 1763640254.0], y=[1450.0, 567565.0] (must be same and length>=4)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,460 | INFO     | could have reported an average CPU frequency of 2595 MHz (4 samples)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | ..............................
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . Timing measurements:
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . get job = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . initial setup = 3 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . payload setup = 7 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . stage-in = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . payload execution = 83 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . stage-out = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | . log creation = 0 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | ..............................
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-20 04:07:46] 2025-11-20 12:06:39,461 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6893839060/pilotlog.txt
[2025-11-20 04:07:46] [end log extracts]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,476 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,476 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | 
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | job summary report
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | --------------------------------------------------
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | PanDA job id: 6893839060
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | task id: 47523449
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-20 04:04:23,750 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | pilot state: failed 
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | transexitcode: 65
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | exeerrorcode: 65
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | exitcode: 65
[2025-11-20 04:07:46] 2025-11-20 12:06:39,745 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | cpuconsumptiontime: 46 s
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | nevents: 0
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | neventsw: 0
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | pid: 2992157
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | pgrp: 2992157
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | corecount: 12
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | event service: False
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | sizes: {0: 2297037, 1: 2297236, 8: 2297498, 11: 2297526, 94: 2322923, 95: 2327213, 98: 2327369, 222: 2327535}
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | --------------------------------------------------
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | 
[2025-11-20 04:07:46] 2025-11-20 12:06:39,746 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-20 04:07:46] 2025-11-20 12:06:39,778 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 04:07:46] 2025-11-20 12:06:39,780 | INFO     | job 6893839060 has completed (purged errors)
[2025-11-20 04:07:46] 2025-11-20 12:06:39,780 | INFO     | overall cleanup function is called
[2025-11-20 04:07:46] 2025-11-20 12:06:40,788 | INFO     | --- collectZombieJob: --- 10, [2992157]
[2025-11-20 04:07:46] 2025-11-20 12:06:40,789 | INFO     | zombie collector waiting for pid 2992157
[2025-11-20 04:07:46] 2025-11-20 12:06:40,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 04:07:46] 2025-11-20 12:06:40,790 | INFO     | collected zombie processes
[2025-11-20 04:07:46] 2025-11-20 12:06:40,791 | INFO     | will attempt to kill all subprocesses of pid=2992157
[2025-11-20 04:07:46] 2025-11-20 12:06:41,051 | INFO     | process IDs to be killed: [2992157] (in reverse order)
[2025-11-20 04:07:46] 2025-11-20 12:06:41,162 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 04:07:46] 2025-11-20 12:06:41,162 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 04:07:46] 2025-11-20 12:06:41,171 | INFO     | did not find any defunct processes belonging to 2992157
[2025-11-20 04:07:46] 2025-11-20 12:06:41,180 | INFO     | did not find any defunct processes belonging to 2992157
[2025-11-20 04:07:46] 2025-11-20 12:06:41,180 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 04:07:46] 2025-11-20 12:06:41,181 | INFO     | ready for new job
[2025-11-20 04:07:46] 2025-11-20 12:06:41,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 04:07:46] 2025-11-20 12:06:41,182 | INFO     | ***************************************
[2025-11-20 04:07:46] 2025-11-20 12:06:41,182 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 04:07:46] 2025-11-20 12:06:41,182 | INFO     | ***************************************
[2025-11-20 04:07:46] 2025-11-20 12:06:41,182 | INFO     | 
[2025-11-20 04:07:46] 2025-11-20 12:06:41,184 | INFO     | architecture information:
[2025-11-20 04:07:46] 2025-11-20 12:06:41,196 | INFO     | executing command: cat /etc/os-release
[2025-11-20 04:07:46] 2025-11-20 12:06:41,210 | INFO     | cat /etc/os-release:
[2025-11-20 04:07:46] NAME="CentOS Linux"
[2025-11-20 04:07:46] VERSION="7 (Core)"
[2025-11-20 04:07:46] ID="centos"
[2025-11-20 04:07:46] ID_LIKE="rhel fedora"
[2025-11-20 04:07:46] VERSION_ID="7"
[2025-11-20 04:07:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 04:07:46] ANSI_COLOR="0;31"
[2025-11-20 04:07:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 04:07:46] HOME_URL="https://www.centos.org/"
[2025-11-20 04:07:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 04:07:46] 
[2025-11-20 04:07:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 04:07:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 04:07:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 04:07:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 04:07:46] 
[2025-11-20 04:07:46] 2025-11-20 12:06:41,211 | INFO     | ***************************************
[2025-11-20 04:07:46] 2025-11-20 12:06:41,716 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-20 04:07:46] 2025-11-20 12:06:41,732 | INFO     | sufficient remaining disk space (1670712918016 B)
[2025-11-20 04:07:46] 2025-11-20 12:06:41,733 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 04:07:46] 2025-11-20 12:06:41,733 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 04:07:46] 2025-11-20 12:06:41,733 | INFO     | update_server=False
[2025-11-20 04:07:46] 2025-11-20 12:06:41,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 04:07:46] 2025-11-20 12:06:41,962 | INFO     | all data control threads have been joined
[2025-11-20 04:07:46] 2025-11-20 12:06:42,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 04:07:46] 2025-11-20 12:06:42,455 | INFO     | aborting loop
[2025-11-20 04:07:46] 2025-11-20 12:06:42,610 | INFO     | all job control threads have been joined
[2025-11-20 04:07:46] 2025-11-20 12:06:42,616 | INFO     | all payload control threads have been joined
[2025-11-20 04:07:46] 2025-11-20 12:06:42,736 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 04:07:46] 2025-11-20 12:06:42,738 | INFO     | [job] retrieve thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:42,890 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 04:07:46] 2025-11-20 12:06:42,969 | INFO     | [data] control thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,243 | INFO     | [payload] validate_post thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,277 | INFO     | [data] copytool_in thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,461 | INFO     | [job] job monitor thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,617 | INFO     | [job] control thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,622 | INFO     | [payload] control thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,742 | INFO     | [job] validate thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,861 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,980 | INFO     | [payload] failed_post thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:43,983 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:44,175 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:44,204 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:44,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 04:07:46] 2025-11-20 12:06:44,744 | INFO     | [data] copytool_out thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:45,564 | INFO     | [job] queue monitor thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:06:46,898 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 04:07:46] 2025-11-20 12:07:12,642 | INFO     | PID=2985554 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 04:07:46] 2025-11-20 12:07:12,642 | INFO     | .. there are 35 such processes running
[2025-11-20 04:07:46] 2025-11-20 12:07:12,643 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 04:07:46] 2025-11-20 12:07:12,643 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 04:07:46] 2025-11-20 12:07:12,643 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 04:07:46] 2025-11-20 12:07:40,260 | INFO     | [monitor] cgroup control has ended
[2025-11-20 04:07:46] 2025-11-20 12:07:40,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766479402816)>', '<ExcThread(monitor, started 139765911365376)>']
[2025-11-20 04:07:46] 2025-11-20 12:07:40,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 04:07:46] 2025-11-20 12:07:40,839 | INFO     | [monitor] control thread has ended
[2025-11-20 04:07:46] 2025-11-20 12:07:45,779 | INFO     | all workflow threads have been joined
[2025-11-20 04:07:46] 2025-11-20 12:07:45,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 04:07:46] 2025-11-20 12:07:45,780 | INFO     | traces error code: 0
[2025-11-20 04:07:46] 2025-11-20 12:07:45,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 04:07:46] 2025-11-20 12:07:45,975 [wrapper] ==== pilot stdout END ====
[2025-11-20 04:07:46] 2025-11-20 12:07:45,977 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 04:07:46] 2025-11-20 12:07:45,979 [wrapper] pilotpid: 2985554
[2025-11-20 04:07:46] 2025-11-20 12:07:45,981 [wrapper] Pilot exit status: 0
[2025-11-20 04:07:46] 2025-11-20 12:07:45,995 [wrapper] pandaids: 6893839060
[2025-11-20 04:07:46] 2025-11-20 12:07:46,048 [wrapper] cleanup supervisor_pilot 2985560 2985555
[2025-11-20 04:07:46] 2025-11-20 12:07:46,051 [wrapper] Test setup, not cleaning
[2025-11-20 04:07:46] 2025-11-20 12:07:46,053 [wrapper] apfmon messages muted
[2025-11-20 04:07:46] 2025-11-20 12:07:46,055 [wrapper] ==== wrapper stdout END ====
[2025-11-20 04:07:46] 2025-11-20 12:07:46,056 [wrapper] ==== wrapper stderr END ====
[2025-11-20 04:07:46]  *** Error codes and diagnostics ***
[2025-11-20 04:07:46]     "exeErrorCode": 65,
[2025-11-20 04:07:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-20 04:07:46]     "pilotErrorCode": 1305,
[2025-11-20 04:07:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-20 04:07:46]  *** Listing of results directory ***
[2025-11-20 04:07:46] total 405684
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc    576529 Nov 20 02:06 pilot3.tar.gz
[2025-11-20 04:07:46] -rwx------. 1 boinc boinc     36292 Nov 20 02:18 runpilot2-wrapper.sh
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc      5112 Nov 20 02:19 queuedata.json
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc       100 Nov 20 04:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 04:07:46] -rwxr-xr-x. 1 boinc boinc      7986 Nov 20 04:02 run_atlas
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc       105 Nov 20 04:02 job.xml
[2025-11-20 04:07:46] -rw-r--r--. 2 boinc boinc 411214281 Nov 20 04:02 EVNT.47493127._000143.pool.root.1
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc      6594 Nov 20 04:02 init_data.xml
[2025-11-20 04:07:46] -rw-r--r--. 2 boinc boinc     15847 Nov 20 04:02 start_atlas.sh
[2025-11-20 04:07:46] drwxrwx--x. 2 boinc boinc      4096 Nov 20 04:02 shared
[2025-11-20 04:07:46] -rw-r--r--. 2 boinc boinc    590100 Nov 20 04:02 input.tar.gz
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc         0 Nov 20 04:02 boinc_lockfile
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc      2786 Nov 20 04:02 pandaJob.out
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc    989448 Nov 20 04:02 agis_schedconf.cvmfs.json
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc   1525063 Nov 20 04:02 agis_ddmendpoints.agis.ALL.json
[2025-11-20 04:07:46] drwx------. 5 boinc boinc      4096 Nov 20 04:02 pilot3
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc       523 Nov 20 04:04 boinc_task_state.xml
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc      1019 Nov 20 04:04 memory_monitor_summary.json
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc     48350 Nov 20 04:04 log.47523449._001429.job.log.tgz.1
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc     10336 Nov 20 04:06 heartbeat.json
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc        95 Nov 20 04:07 pilot_heartbeat.json
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc      8192 Nov 20 04:07 boinc_mmap_file
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc        23 Nov 20 04:07 wrapper_checkpoint.txt
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc      4823 Nov 20 04:07 pilotlog.txt
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc     97199 Nov 20 04:07 log.47523449._001429.job.log.1
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc       186 Nov 20 04:07 output.list
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc       620 Nov 20 04:07 runtime_log
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc    163840 Nov 20 04:07 result.tar.gz
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc      8636 Nov 20 04:07 runtime_log.err
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc       645 Nov 20 04:07 M0pNDmZvGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPNGKDmpxFnOn.diag
[2025-11-20 04:07:46] -rw-r--r--. 1 boinc boinc     22478 Nov 20 04:07 stderr.txt
[2025-11-20 04:07:46] No HITS result produced
[2025-11-20 04:07:46]  *** Contents of shared directory: ***
[2025-11-20 04:07:46] total 402340
[2025-11-20 04:07:46] -rw-r--r--. 2 boinc boinc 411214281 Nov 20 04:02 ATLAS.root_0
[2025-11-20 04:07:46] -rw-r--r--. 2 boinc boinc     15847 Nov 20 04:02 start_atlas.sh
[2025-11-20 04:07:46] -rw-r--r--. 2 boinc boinc    590100 Nov 20 04:02 input.tar.gz
[2025-11-20 04:07:46] -rw-------. 1 boinc boinc    163840 Nov 20 04:07 result.tar.gz
04:07:47 (2981877): run_atlas exited; CPU time 44.911153
04:07:47 (2981877): called boinc_finish(0)

</stderr_txt>
]]>

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