Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:03:03 (3284449): wrapper (7.7.26015): starting
07:03:03 (3284449): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 07:03:03] Arguments: --nthreads 3
[2025-11-27 07:03:03] Threads: 3
[2025-11-27 07:03:03] Checking for CVMFS
[2025-11-27 07:03:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:03:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:03:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:03:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:03:04] 2.9.2.0 3219919 488 51348 153349 0 81 9805235 36864000 0 130560 0 182220 99.980 19830 4887 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 07:03:04] CVMFS is ok
[2025-11-27 07:03:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 07:03:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 07:03:04] Further information can be found at the LHC@home message board.
[2025-11-27 07:03:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:03:04] Checking for apptainer binary...
[2025-11-27 07:03:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:03:04] Running /usr/bin/apptainer --version
[2025-11-27 07:03:04] apptainer version 1.4.1-1.1
[2025-11-27 07:03:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:03:04] atlasA115
[2025-11-27 07:03:04] apptainer works
[2025-11-27 07:03:04] Set ATHENA_PROC_NUMBER=3
[2025-11-27 07:03:04] Set ATHENA_CORE_NUMBER=3
[2025-11-27 07:03:04] Starting ATLAS job with PandaID=6893838731
[2025-11-27 07:03:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:17:29 (3310263): wrapper (7.7.26015): starting
09:17:29 (3310263): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 09:17:29] Arguments: --nthreads 3
[2025-11-27 09:17:29] Threads: 3
[2025-11-27 09:17:29] This job has been restarted, cleaning up previous attempt
[2025-11-27 09:17:29] Checking for CVMFS
[2025-11-27 09:17:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 09:17:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 09:17:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 09:17:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 09:17:30] 2.9.2.0 3219919 622 54196 153354 2 49 9832460 36864001 0 130560 0 259007 99.981 26428 4469 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 09:17:30] CVMFS is ok
[2025-11-27 09:17:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 09:17:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 09:17:30] Further information can be found at the LHC@home message board.
[2025-11-27 09:17:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 09:17:30] Checking for apptainer binary...
[2025-11-27 09:17:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 09:17:30] Running /usr/bin/apptainer --version
[2025-11-27 09:17:30] apptainer version 1.4.1-1.1
[2025-11-27 09:17:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 09:17:30] atlasA115
[2025-11-27 09:17:30] apptainer works
[2025-11-27 09:17:30] Set ATHENA_PROC_NUMBER=3
[2025-11-27 09:17:30] Set ATHENA_CORE_NUMBER=3
[2025-11-27 09:17:30] Starting ATLAS job with PandaID=6893838731
[2025-11-27 09:17:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:28:28]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:28:28] 2025-11-27 16:27:52,850 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 17:28:28] 2025-11-27 16:27:53,208 | INFO     | time since job start (29417s) is within the limit (172800.0s)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,091 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 17:28:28] 2025-11-27 16:27:55,092 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3440.578166666666
[2025-11-27 17:28:28] 2025-11-27 16:27:55,093 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6893838731/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,094 | INFO     | extracted standard info from prmon json
[2025-11-27 17:28:28] 2025-11-27 16:27:55,094 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:28:28] 2025-11-27 16:27:55,094 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:28:28] 2025-11-27 16:27:55,096 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:28:28] 2025-11-27 16:27:55,097 | INFO     | sum of square deviations: 34723034300.5
[2025-11-27 17:28:28] 2025-11-27 16:27:55,098 | INFO     | sum of deviations: 244259611272.49997
[2025-11-27 17:28:28] 2025-11-27 16:27:55,099 | INFO     | mean x: 1764246146.5
[2025-11-27 17:28:28] 2025-11-27 16:27:55,099 | INFO     | mean y: 2209114.043568465
[2025-11-27 17:28:28] 2025-11-27 16:27:55,099 | INFO     | intersect: -12408402072.862144
[2025-11-27 17:28:28] 2025-11-27 16:27:55,099 | INFO     | chi2: 3.3814715783869773
[2025-11-27 17:28:28] 2025-11-27 16:27:55,099 | INFO     | sum of square deviations: 33653609598.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,101 | INFO     | sum of deviations: 283854698432.00024
[2025-11-27 17:28:28] 2025-11-27 16:27:55,101 | INFO     | mean x: 1764245994.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,101 | INFO     | mean y: 2214723.046121593
[2025-11-27 17:28:28] 2025-11-27 16:27:55,101 | INFO     | intersect: -14878492593.903793
[2025-11-27 17:28:28] 2025-11-27 16:27:55,101 | INFO     | chi2: 2.507830683227221
[2025-11-27 17:28:28] 2025-11-27 16:27:55,101 | INFO     | current chi2=2.507830683227221 (change=25.836115280214745 %)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,102 | INFO     | sum of square deviations: 32606371358.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | sum of deviations: 280683696941.00006
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | mean x: 1764245841.5
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | mean y: 2214261.2584745763
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | intersect: -15184849630.888147
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | chi2: 2.504569086949083
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | current chi2=2.504569086949083 (change=0.13005647869099773 %)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | right removable region: 471
[2025-11-27 17:28:28] 2025-11-27 16:27:55,104 | INFO     | sum of square deviations: 33653609598.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,106 | INFO     | sum of deviations: 139854182964.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,106 | INFO     | mean x: 1764246299.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,106 | INFO     | mean y: 2223985.142557652
[2025-11-27 17:28:28] 2025-11-27 16:27:55,106 | INFO     | intersect: -7329447940.729227
[2025-11-27 17:28:28] 2025-11-27 16:27:55,107 | INFO     | chi2: 1.190342871888535
[2025-11-27 17:28:28] 2025-11-27 16:27:55,107 | INFO     | current chi2=1.190342871888535 (change=64.79808141825785 %)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,107 | INFO     | sum of square deviations: 32606371358.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | sum of deviations: 111373601933.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | mean x: 1764246451.5
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | mean y: 2228117.584745763
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | intersect: -6023909530.291233
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | chi2: 0.9747370501628508
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | current chi2=0.9747370501628508 (change=18.112917447358285 %)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | left removable region: 20
[2025-11-27 17:28:28] 2025-11-27 16:27:55,109 | INFO     | sum of square deviations: 28444998450.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,111 | INFO     | sum of deviations: 126750791203.00002
[2025-11-27 17:28:28] 2025-11-27 16:27:55,111 | INFO     | mean x: 1764246421.0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,111 | INFO     | mean y: 2237285.006651885
[2025-11-27 17:28:28] 2025-11-27 16:27:55,111 | INFO     | intersect: -7859237206.963695
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | chi2: 0.07182488289697887
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | current memory leak: 4.46 B/s (using 451 data points, chi2=0.07)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | could have reported an average CPU frequency of 3866 MHz (20 samples)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | ..............................
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . Timing measurements:
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . get job = 0 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . initial setup = 0 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . payload setup = 2 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . stage-in = 0 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . payload execution = 29393 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . stage-out = 1 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | . log creation = 0 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,112 | INFO     | ..............................
[2025-11-27 17:28:28] 2025-11-27 16:27:55,213 | INFO     | time since job start (29419s) is within the limit (172800.0s)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | 
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | job summary report
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | --------------------------------------------------
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | PanDA job id: 6893838731
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | task id: 47523449
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | errors: (none)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | pilot state: finished 
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | transexitcode: 0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | exeerrorcode: 0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | exeerrordiag: 
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | exitcode: 0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | exitmsg: OK
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | cpuconsumptiontime: 86992 s
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | nevents: 1000
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | neventsw: 0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | pid: 3320736
[2025-11-27 17:28:28] 2025-11-27 16:27:55,607 | INFO     | pgrp: 3320736
[2025-11-27 17:28:28] 2025-11-27 16:27:55,608 | INFO     | corecount: 3
[2025-11-27 17:28:28] 2025-11-27 16:27:55,608 | INFO     | event service: False
[2025-11-27 17:28:28] 2025-11-27 16:27:55,608 | INFO     | sizes: {0: 2284318, 2: 2284580, 11: 2284608, 29399: 2323740, 29400: 2332740, 29402: 2332796, 29405: 2333170}
[2025-11-27 17:28:28] 2025-11-27 16:27:55,608 | INFO     | --------------------------------------------------
[2025-11-27 17:28:28] 2025-11-27 16:27:55,608 | INFO     | 
[2025-11-27 17:28:28] 2025-11-27 16:27:55,608 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | job 6893838731 has completed (purged errors)
[2025-11-27 17:28:28] 2025-11-27 16:27:55,624 | INFO     | overall cleanup function is called
[2025-11-27 17:28:28] 2025-11-27 16:27:56,633 | INFO     | --- collectZombieJob: --- 10, [3320736]
[2025-11-27 17:28:28] 2025-11-27 16:27:56,633 | INFO     | zombie collector waiting for pid 3320736
[2025-11-27 17:28:28] 2025-11-27 16:27:56,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:28:28] 2025-11-27 16:27:56,633 | INFO     | collected zombie processes
[2025-11-27 17:28:28] 2025-11-27 16:27:56,633 | INFO     | will attempt to kill all subprocesses of pid=3320736
[2025-11-27 17:28:28] 2025-11-27 16:27:56,675 | INFO     | process IDs to be killed: [3320736] (in reverse order)
[2025-11-27 17:28:28] 2025-11-27 16:27:56,699 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:28:28] 2025-11-27 16:27:56,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:28:28] 2025-11-27 16:27:56,700 | INFO     | did not find any defunct processes belonging to 3320736
[2025-11-27 17:28:28] 2025-11-27 16:27:56,701 | INFO     | did not find any defunct processes belonging to 3320736
[2025-11-27 17:28:28] 2025-11-27 16:27:56,701 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:28:28] 2025-11-27 16:27:56,701 | INFO     | ready for new job
[2025-11-27 17:28:28] 2025-11-27 16:27:56,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:28:28] 2025-11-27 16:27:56,703 | INFO     | ***************************************
[2025-11-27 17:28:28] 2025-11-27 16:27:56,703 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:28:28] 2025-11-27 16:27:56,703 | INFO     | ***************************************
[2025-11-27 17:28:28] 2025-11-27 16:27:56,703 | INFO     | 
[2025-11-27 17:28:28] 2025-11-27 16:27:56,703 | INFO     | architecture information:
[2025-11-27 17:28:28] 2025-11-27 16:27:56,703 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:28:28] 2025-11-27 16:27:56,712 | INFO     | cat /etc/os-release:
[2025-11-27 17:28:28] NAME="CentOS Linux"
[2025-11-27 17:28:28] VERSION="7 (Core)"
[2025-11-27 17:28:28] ID="centos"
[2025-11-27 17:28:28] ID_LIKE="rhel fedora"
[2025-11-27 17:28:28] VERSION_ID="7"
[2025-11-27 17:28:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:28:28] ANSI_COLOR="0;31"
[2025-11-27 17:28:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:28:28] HOME_URL="https://www.centos.org/"
[2025-11-27 17:28:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:28:28] 
[2025-11-27 17:28:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:28:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:28:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:28:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:28:28] 
[2025-11-27 17:28:28] 2025-11-27 16:27:56,712 | INFO     | ***************************************
[2025-11-27 17:28:28] 2025-11-27 16:27:57,215 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 17:28:28] 2025-11-27 16:27:57,229 | INFO     | sufficient remaining disk space (344457216000 B)
[2025-11-27 17:28:28] 2025-11-27 16:27:57,229 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:28:28] 2025-11-27 16:27:57,229 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:28:28] 2025-11-27 16:27:57,229 | INFO     | update_server=False
[2025-11-27 17:28:28] 2025-11-27 16:27:57,229 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:28:28] 2025-11-27 16:27:57,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:28:28] 2025-11-27 16:27:57,229 | INFO     | aborting loop
[2025-11-27 17:28:28] 2025-11-27 16:27:57,455 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:28:28] 2025-11-27 16:27:57,986 | INFO     | all payload control threads have been joined
[2025-11-27 17:28:28] 2025-11-27 16:27:58,099 | INFO     | all data control threads have been joined
[2025-11-27 17:28:28] 2025-11-27 16:27:58,235 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:58,235 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:58,257 | INFO     | all job control threads have been joined
[2025-11-27 17:28:28] 2025-11-27 16:27:58,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:28:28] 2025-11-27 16:27:58,366 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:58,712 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:58,992 | INFO     | [payload] control thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:59,105 | INFO     | [data] control thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:59,115 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:59,194 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:59,262 | INFO     | [job] control thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:59,654 | INFO     | [job] validate thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:59,705 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:27:59,829 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:28:00,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:28:28] 2025-11-27 16:28:00,340 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:28:01,155 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:28:01,462 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:28:07,306 | INFO     | job.realtimelogging is not enabled
[2025-11-27 17:28:28] 2025-11-27 16:28:08,312 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:28:28] 2025-11-27 16:28:11,101 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:28:28] 2025-11-27 16:28:13,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075349919552)>', '<ExcThread(monitor, started 140075081897728)>']
[2025-11-27 17:28:28] 2025-11-27 16:28:18,163 | INFO     | all workflow threads have been joined
[2025-11-27 17:28:28] 2025-11-27 16:28:18,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:28:28] 2025-11-27 16:28:18,164 | INFO     | traces error code: 0
[2025-11-27 17:28:28] 2025-11-27 16:28:18,164 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:28:28] 2025-11-27 16:28:28,321 | INFO     | PID=3314298 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:28:28] 2025-11-27 16:28:28,322 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:28:28] 2025-11-27 16:28:28,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:28:28] 2025-11-27 16:28:28,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:28:28] 2025-11-27 16:28:28,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:28:28] 2025-11-27 16:28:28,322 | INFO     | [monitor] control thread has ended
[2025-11-27 17:28:28] 2025-11-27 16:28:28,368 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:28:28] 2025-11-27 16:28:28,371 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:28:28] 2025-11-27 16:28:28,373 [wrapper] pilotpid: 3314298
[2025-11-27 17:28:28] 2025-11-27 16:28:28,376 [wrapper] Pilot exit status: 0
[2025-11-27 17:28:28] 2025-11-27 16:28:28,383 [wrapper] pandaids: 6893838731 6893838731
[2025-11-27 17:28:28] 2025-11-27 16:28:28,398 [wrapper] cleanup supervisor_pilot 3371473 3314299
[2025-11-27 17:28:28] 2025-11-27 16:28:28,401 [wrapper] Test setup, not cleaning
[2025-11-27 17:28:28] 2025-11-27 16:28:28,403 [wrapper] apfmon messages muted
[2025-11-27 17:28:28] 2025-11-27 16:28:28,405 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:28:28] 2025-11-27 16:28:28,408 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:28:28]  *** Error codes and diagnostics ***
[2025-11-27 17:28:28]     "exeErrorCode": 0,
[2025-11-27 17:28:28]     "exeErrorDiag": "",
[2025-11-27 17:28:28]     "pilotErrorCode": 0,
[2025-11-27 17:28:28]     "pilotErrorDiag": "",
[2025-11-27 17:28:28]  *** Listing of results directory ***
[2025-11-27 17:28:28] total 1716288
[2025-11-27 17:28:28] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-27 17:28:28] -rwx------ 1 boinc boinc     36292 Nov 20 11:14 runpilot2-wrapper.sh
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc      5112 Nov 20 11:15 queuedata.json
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc       100 Nov 27 07:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:28:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 07:03 run_atlas
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc       105 Nov 27 07:03 job.xml
[2025-11-27 17:28:28] -rw-r--r-- 3 boinc boinc 410563546 Nov 27 07:03 EVNT.47493127._000138.pool.root.1
[2025-11-27 17:28:28] -rw-r--r-- 3 boinc boinc 410563546 Nov 27 07:03 ATLAS.root_0
[2025-11-27 17:28:28] -rw-r--r-- 2 boinc boinc    590103 Nov 27 07:03 input.tar.gz
[2025-11-27 17:28:28] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:03 start_atlas.sh
[2025-11-27 17:28:28] drwxrwx--x 2 boinc boinc      4096 Nov 27 07:03 shared
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:03 boinc_setup_complete
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc         0 Nov 27 07:03 boinc_lockfile
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc      6450 Nov 27 09:17 init_data.xml
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc      2786 Nov 27 09:17 pandaJob.out
[2025-11-27 17:28:28] -rw------- 1 boinc boinc    991570 Nov 27 09:17 agis_schedconf.cvmfs.json
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc       532 Nov 27 17:25 boinc_task_state.xml
[2025-11-27 17:28:28] -rw------- 1 boinc boinc 921806843 Nov 27 17:27 HITS.47523449._001374.pool.root.1
[2025-11-27 17:28:28] -rw------- 1 boinc boinc      1023 Nov 27 17:27 memory_monitor_summary.json
[2025-11-27 17:28:28] -rw------- 1 boinc boinc   1516240 Nov 27 17:27 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:28:28] -rw------- 1 boinc boinc   1174587 Nov 27 17:27 log.47523449._001374.job.log.tgz.1
[2025-11-27 17:28:28] -rw------- 1 boinc boinc      8571 Nov 27 17:27 heartbeat.json
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc        29 Nov 27 17:28 wrapper_checkpoint.txt
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc      8192 Nov 27 17:28 boinc_mmap_file
[2025-11-27 17:28:28] -rw------- 1 boinc boinc       747 Nov 27 17:28 pilotlog.txt
[2025-11-27 17:28:28] -rw------- 1 boinc boinc        96 Nov 27 17:28 pilot_heartbeat.json
[2025-11-27 17:28:28] -rw------- 1 boinc boinc   4140853 Nov 27 17:28 log.47523449._001374.job.log.1
[2025-11-27 17:28:28] -rw------- 1 boinc boinc       353 Nov 27 17:28 output.list
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc       620 Nov 27 17:28 runtime_log
[2025-11-27 17:28:28] -rw------- 1 boinc boinc   5335040 Nov 27 17:28 result.tar.gz
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc      8998 Nov 27 17:28 runtime_log.err
[2025-11-27 17:28:28] -rw------- 1 boinc boinc       793 Nov 27 17:28 NpaMDmsrGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJJGKDmX7Cwzm.diag
[2025-11-27 17:28:28] -rw-r--r-- 1 boinc boinc     23452 Nov 27 17:28 stderr.txt
[2025-11-27 17:28:28] HITS file was successfully produced:
[2025-11-27 17:28:28] -rw------- 1 boinc boinc 921806843 Nov 27 17:27 shared/HITS.pool.root.1
[2025-11-27 17:28:28]  *** Contents of shared directory: ***
[2025-11-27 17:28:28] total 1306960
[2025-11-27 17:28:28] -rw-r--r-- 3 boinc boinc 410563546 Nov 27 07:03 ATLAS.root_0
[2025-11-27 17:28:28] -rw-r--r-- 2 boinc boinc    590103 Nov 27 07:03 input.tar.gz
[2025-11-27 17:28:28] -rw-r--r-- 2 boinc boinc     15847 Nov 27 07:03 start_atlas.sh
[2025-11-27 17:28:28] -rw------- 1 boinc boinc 921806843 Nov 27 17:27 HITS.pool.root.1
[2025-11-27 17:28:28] -rw------- 1 boinc boinc   5335040 Nov 27 17:28 result.tar.gz
17:28:30 (3310263): run_atlas exited; CPU time 87000.415461
17:28:30 (3310263): called boinc_finish(0)

</stderr_txt>
]]>

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