Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:12:14 (4696): wrapper (7.7.26015): starting
01:12:14 (4696): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:12:14] Arguments: --nthreads 8
[2025-11-23 01:12:14] Threads: 8
[2025-11-23 01:12:14] Checking for CVMFS
[2025-11-23 01:12:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:12:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:12:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:12:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:12:17] 2.11.2.0 22322 205511 137324 153190 0 85 22031700 25165824 4632 130560 2 81968405 99.903 34417275 2523 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 01:12:17] CVMFS is ok
[2025-11-23 01:12:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:12:17] Checking for apptainer binary...
[2025-11-23 01:12:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:12:17] Running /usr/bin/apptainer --version
[2025-11-23 01:12:18] apptainer version 1.3.2-1.el7
[2025-11-23 01:12:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:12:41] cg-vwn447.simple-grid.lan
[2025-11-23 01:12:41] apptainer works
[2025-11-23 01:12:41] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:12:41] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:12:41] Starting ATLAS job with PandaID=6893834928
[2025-11-23 01:12:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:35:22]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:35:22] 2025-11-24 01:34:10,432 | INFO     | PID=8517 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 02:35:22] 2025-11-24 01:34:10,442 | INFO     | .. there are 9 such processes running
[2025-11-24 02:35:22] 2025-11-24 01:34:11,443 | INFO     | time since job start (91059s) is within the limit (172800.0s)
[2025-11-24 02:35:22] 2025-11-24 01:34:12,704 | INFO     | monitor loop #6114: job 0:6893834928 is in state 'finished'
[2025-11-24 02:35:22] 2025-11-24 01:34:12,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:35:22] 2025-11-24 01:34:13,451 | INFO     | time since job start (91061s) is within the limit (172800.0s)
[2025-11-24 02:35:22] 2025-11-24 01:34:15,213 | INFO     | monitor loop #6115: job 0:6893834928 is in state 'finished'
[2025-11-24 02:35:22] 2025-11-24 01:34:15,213 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:35:22] 2025-11-24 01:34:15,458 | INFO     | time since job start (91063s) is within the limit (172800.0s)
[2025-11-24 02:35:22] 2025-11-24 01:34:17,465 | INFO     | time since job start (91065s) is within the limit (172800.0s)
[2025-11-24 02:35:22] 2025-11-24 01:34:17,719 | INFO     | monitor loop #6116: job 0:6893834928 is in state 'finished'
[2025-11-24 02:35:22] 2025-11-24 01:34:17,719 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:35:22] 2025-11-24 01:34:19,475 | INFO     | time since job start (91067s) is within the limit (172800.0s)
[2025-11-24 02:35:22] 2025-11-24 01:34:20,225 | INFO     | monitor loop #6117: job 0:6893834928 is in state 'finished'
[2025-11-24 02:35:22] 2025-11-24 01:34:20,225 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:35:22] 2025-11-24 01:34:20,484 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:35:22] 2025-11-24 01:34:20,485 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 02:35:22] 2025-11-24 01:34:20,487 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6893834928/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:35:22] 2025-11-24 01:34:20,488 | INFO     | extracted standard info from prmon json
[2025-11-24 02:35:22] 2025-11-24 01:34:20,488 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:35:22] 2025-11-24 01:34:20,488 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:35:22] 2025-11-24 01:34:20,545 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:35:22] 2025-11-24 01:34:20,548 | INFO     | sum of square deviations: 1011351939109.6351
[2025-11-24 02:35:22] 2025-11-24 01:34:20,618 | INFO     | sum of deviations: 3747539417091.139
[2025-11-24 02:35:22] 2025-11-24 01:34:20,619 | INFO     | mean x: 1763902717.2440999
[2025-11-24 02:35:22] 2025-11-24 01:34:20,619 | INFO     | mean y: 2839344.187457856
[2025-11-24 02:35:22] 2025-11-24 01:34:20,619 | INFO     | intersect: -6533258234.866913
[2025-11-24 02:35:22] 2025-11-24 01:34:20,621 | INFO     | chi2: 23.6391172638572
[2025-11-24 02:35:22] 2025-11-24 01:34:20,623 | INFO     | sum of square deviations: 1001157510674.3706
[2025-11-24 02:35:22] 2025-11-24 01:34:20,689 | INFO     | sum of deviations: 4228354094151.251
[2025-11-24 02:35:22] 2025-11-24 01:34:20,690 | INFO     | mean x: 1763902564.7483084
[2025-11-24 02:35:22] 2025-11-24 01:34:20,690 | INFO     | mean y: 2846535.602841678
[2025-11-24 02:35:22] 2025-11-24 01:34:20,690 | INFO     | intersect: -7446934894.207827
[2025-11-24 02:35:22] 2025-11-24 01:34:20,692 | INFO     | chi2: 20.564477732648626
[2025-11-24 02:35:22] 2025-11-24 01:34:20,692 | INFO     | current chi2=20.564477732648626 (change=13.006575063230114 %)
[2025-11-24 02:35:22] 2025-11-24 01:34:20,692 | INFO     | right removable region: 1477
[2025-11-24 02:35:22] 2025-11-24 01:34:20,694 | INFO     | sum of square deviations: 1001156385224.3704
[2025-11-24 02:35:22] 2025-11-24 01:34:20,753 | INFO     | sum of deviations: 3117377368874.2886
[2025-11-24 02:35:22] 2025-11-24 01:34:20,753 | INFO     | mean x: 1763902869.7483084
[2025-11-24 02:35:22] 2025-11-24 01:34:20,753 | INFO     | mean y: 2848769.7158322055
[2025-11-24 02:35:22] 2025-11-24 01:34:20,754 | INFO     | intersect: -5489550787.635498
[2025-11-24 02:35:22] 2025-11-24 01:34:20,755 | INFO     | chi2: 18.768908693269683
[2025-11-24 02:35:22] 2025-11-24 01:34:20,755 | INFO     | current chi2=18.768908693269683 (change=20.602328404342646 %)
[2025-11-24 02:35:22] 2025-11-24 01:34:20,756 | INFO     | left removable region: 10
[2025-11-24 02:35:22] 2025-11-24 01:34:20,759 | INFO     | sum of square deviations: 978969173840.6013
[2025-11-24 02:35:22] 2025-11-24 01:34:20,871 | INFO     | sum of deviations: 3140369478182.9487
[2025-11-24 02:35:22] 2025-11-24 01:34:20,872 | INFO     | mean x: 1763902839.2576687
[2025-11-24 02:35:22] 2025-11-24 01:34:20,872 | INFO     | mean y: 2866207.2937968643
[2025-11-24 02:35:22] 2025-11-24 01:34:20,872 | INFO     | intersect: -5655439270.450443
[2025-11-24 02:35:22] 2025-11-24 01:34:20,874 | INFO     | chi2: 11.104045913840306
[2025-11-24 02:35:22] 2025-11-24 01:34:20,874 | INFO     | current memory leak: 3.21 B/s (using 1467 data points, chi2=11.10)
[2025-11-24 02:35:22] 2025-11-24 01:34:20,877 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 02:35:22] 2025-11-24 01:34:20,877 | INFO     | ..............................
[2025-11-24 02:35:22] 2025-11-24 01:34:20,877 | INFO     | . Timing measurements:
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | . get job = 0 s
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | . initial setup = 12 s
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | . payload setup = 166 s
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | . stage-in = 0 s
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | . payload execution = 90605 s
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | . stage-out = 3 s
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | . log creation = 1 s
[2025-11-24 02:35:22] 2025-11-24 01:34:20,878 | INFO     | ..............................
[2025-11-24 02:35:22] 2025-11-24 01:34:21,070 | INFO     | 
[2025-11-24 02:35:22] 2025-11-24 01:34:21,071 | INFO     | job summary report
[2025-11-24 02:35:22] 2025-11-24 01:34:21,071 | INFO     | --------------------------------------------------
[2025-11-24 02:35:22] 2025-11-24 01:34:21,071 | INFO     | PanDA job id: 6893834928
[2025-11-24 02:35:22] 2025-11-24 01:34:21,071 | INFO     | task id: 47523449
[2025-11-24 02:35:22] 2025-11-24 01:34:21,071 | INFO     | errors: (none)
[2025-11-24 02:35:22] 2025-11-24 01:34:21,071 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:35:22] 2025-11-24 01:34:21,071 | INFO     | pilot state: finished 
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | transexitcode: 0
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | exeerrorcode: 0
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | exeerrordiag: 
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | exitcode: 0
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | exitmsg: OK
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | cpuconsumptiontime: 336015 s
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | nevents: 1000
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | neventsw: 0
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | pid: 15074
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | pgrp: 15074
[2025-11-24 02:35:22] 2025-11-24 01:34:21,072 | INFO     | corecount: 8
[2025-11-24 02:35:22] 2025-11-24 01:34:21,073 | INFO     | event service: False
[2025-11-24 02:35:22] 2025-11-24 01:34:21,073 | INFO     | sizes: {0: 2298803, 1: 2298831, 12: 2298831, 22: 2298859, 33: 2298887, 44: 2298943, 55: 2299099, 65: 2299127, 76: 2299155, 87: 2299211, 97: 2299501, 98: 2299809, 9
[2025-11-24 02:35:22] 2025-11-24 01:34:21,073 | INFO     | --------------------------------------------------
[2025-11-24 02:35:22] 2025-11-24 01:34:21,073 | INFO     | 
[2025-11-24 02:35:22] 2025-11-24 01:34:21,073 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-24 02:35:22] 2025-11-24 01:34:21,482 | INFO     | time since job start (91069s) is within the limit (172800.0s)
[2025-11-24 02:35:22] 2025-11-24 01:34:21,609 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,609 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:35:22] 2025-11-24 01:34:21,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,611 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:35:22] 2025-11-24 01:34:21,611 | INFO     | job 6893834928 has completed (purged errors)
[2025-11-24 02:35:22] 2025-11-24 01:34:21,611 | INFO     | overall cleanup function is called
[2025-11-24 02:35:22] 2025-11-24 01:34:22,629 | INFO     | --- collectZombieJob: --- 10, [15074]
[2025-11-24 02:35:22] 2025-11-24 01:34:22,630 | INFO     | zombie collector waiting for pid 15074
[2025-11-24 02:35:22] 2025-11-24 01:34:22,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:35:22] 2025-11-24 01:34:22,630 | INFO     | collected zombie processes
[2025-11-24 02:35:22] 2025-11-24 01:34:22,630 | INFO     | will attempt to kill all subprocesses of pid=15074
[2025-11-24 02:35:22] 2025-11-24 01:34:22,736 | INFO     | process IDs to be killed: [15074] (in reverse order)
[2025-11-24 02:35:22] 2025-11-24 01:34:23,613 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:35:22] 2025-11-24 01:34:23,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:35:22] 2025-11-24 01:34:23,618 | INFO     | did not find any defunct processes belonging to 15074
[2025-11-24 02:35:22] 2025-11-24 01:34:23,633 | INFO     | did not find any defunct processes belonging to 15074
[2025-11-24 02:35:22] 2025-11-24 01:34:23,666 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:35:22] 2025-11-24 01:34:23,666 | INFO     | ready for new job
[2025-11-24 02:35:22] 2025-11-24 01:34:23,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:35:22] 2025-11-24 01:34:23,674 | INFO     | ***************************************
[2025-11-24 02:35:22] 2025-11-24 01:34:23,674 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:35:22] 2025-11-24 01:34:23,674 | INFO     | ***************************************
[2025-11-24 02:35:22] 2025-11-24 01:34:23,674 | INFO     | 
[2025-11-24 02:35:22] 2025-11-24 01:34:23,675 | INFO     | pilot is running in a VM
[2025-11-24 02:35:22] 2025-11-24 01:34:23,675 | INFO     | architecture information:
[2025-11-24 02:35:22] 2025-11-24 01:34:23,684 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:35:22] 2025-11-24 01:34:23,899 | INFO     | cat /etc/os-release:
[2025-11-24 02:35:22] NAME="CentOS Linux"
[2025-11-24 02:35:22] VERSION="7 (Core)"
[2025-11-24 02:35:22] ID="centos"
[2025-11-24 02:35:22] ID_LIKE="rhel fedora"
[2025-11-24 02:35:22] VERSION_ID="7"
[2025-11-24 02:35:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:35:22] ANSI_COLOR="0;31"
[2025-11-24 02:35:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:35:22] HOME_URL="https://www.centos.org/"
[2025-11-24 02:35:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:35:22] 
[2025-11-24 02:35:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:35:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:35:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:35:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:35:22] 
[2025-11-24 02:35:22] 2025-11-24 01:34:23,899 | INFO     | ***************************************
[2025-11-24 02:35:22] 2025-11-24 01:34:24,403 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-24 02:35:22] 2025-11-24 01:34:24,681 | INFO     | sufficient remaining disk space (495107178496 B)
[2025-11-24 02:35:22] 2025-11-24 01:34:24,681 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:35:22] 2025-11-24 01:34:24,681 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:35:22] 2025-11-24 01:34:24,681 | INFO     | update_server=False
[2025-11-24 02:35:22] 2025-11-24 01:34:24,681 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:35:22] 2025-11-24 01:34:24,682 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:35:22] 2025-11-24 01:34:24,682 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:35:22] 2025-11-24 01:34:24,683 | INFO     | aborting loop
[2025-11-24 02:35:22] 2025-11-24 01:34:25,021 | INFO     | all payload control threads have been joined
[2025-11-24 02:35:22] 2025-11-24 01:34:25,081 | INFO     | all data control threads have been joined
[2025-11-24 02:35:22] 2025-11-24 01:34:25,352 | INFO     | all job control threads have been joined
[2025-11-24 02:35:22] 2025-11-24 01:34:25,688 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:25,689 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:25,768 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:25,786 | INFO     | [job] validate thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:25,903 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:25,909 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:25,909 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:26,027 | INFO     | [payload] control thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:26,088 | INFO     | [data] control thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:26,091 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:35:22] 2025-11-24 01:34:26,358 | INFO     | [job] control thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:26,360 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:26,425 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:26,458 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:35:22] 2025-11-24 01:34:26,678 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:26,689 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:27,098 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:30,467 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:35:22] 2025-11-24 01:34:54,701 | INFO     | PID=8517 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 02:35:22] 2025-11-24 01:34:54,701 | INFO     | .. there are 9 such processes running
[2025-11-24 02:35:22] 2025-11-24 01:34:54,701 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:35:22] 2025-11-24 01:34:54,701 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:35:22] 2025-11-24 01:34:54,701 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:35:22] 2025-11-24 01:35:11,362 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:35:22] 2025-11-24 01:35:11,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918517544768)>', '<ExcThread(monitor, started 139917946513152)>']
[2025-11-24 02:35:22] 2025-11-24 01:35:11,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:35:22] 2025-11-24 01:35:11,802 | INFO     | [monitor] control thread has ended
[2025-11-24 02:35:22] 2025-11-24 01:35:16,461 | INFO     | all workflow threads have been joined
[2025-11-24 02:35:22] 2025-11-24 01:35:16,462 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:35:22] 2025-11-24 01:35:16,462 | INFO     | traces error code: 0
[2025-11-24 02:35:22] 2025-11-24 01:35:16,462 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:35:22] 2025-11-24 01:35:16,914 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:35:22] 2025-11-24 01:35:17,028 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:35:22] 2025-11-24 01:35:17,121 [wrapper] pilotpid: 8517
[2025-11-24 02:35:22] 2025-11-24 01:35:17,164 [wrapper] Pilot exit status: 0
[2025-11-24 02:35:22] 2025-11-24 01:35:17,428 [wrapper] pandaids: 6893834928
[2025-11-24 02:35:22] 2025-11-24 01:35:18,422 [wrapper] cleanup supervisor_pilot  8372 8518
[2025-11-24 02:35:22] 2025-11-24 01:35:18,515 [wrapper] Test setup, not cleaning
[2025-11-24 02:35:22] 2025-11-24 01:35:18,599 [wrapper] apfmon messages muted
[2025-11-24 02:35:22] 2025-11-24 01:35:18,656 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:35:22] 2025-11-24 01:35:18,725 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:35:22]  *** Error codes and diagnostics ***
[2025-11-24 02:35:22]     "exeErrorCode": 0,
[2025-11-24 02:35:22]     "exeErrorDiag": "",
[2025-11-24 02:35:22]     "pilotErrorCode": 0,
[2025-11-24 02:35:22]     "pilotErrorDiag": "",
[2025-11-24 02:35:22]  *** Listing of results directory ***
[2025-11-24 02:35:22] total 1316908
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 02:35:22] -rwx------. 1 boinc boinc     36292 Nov 20 11:14 runpilot2-wrapper.sh
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:15 queuedata.json
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc       100 Nov 23 01:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:35:22] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 01:12 run_atlas
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc       105 Nov 23 01:12 job.xml
[2025-11-24 02:35:22] -rw-r--r--. 2 boinc boinc 407386603 Nov 23 01:12 EVNT.47493127._000077.pool.root.1
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc      6390 Nov 23 01:12 init_data.xml
[2025-11-24 02:35:22] -rw-r--r--. 2 boinc boinc     15847 Nov 23 01:12 start_atlas.sh
[2025-11-24 02:35:22] drwxrwx--x. 2 boinc boinc        68 Nov 23 01:12 shared
[2025-11-24 02:35:22] -rw-r--r--. 2 boinc boinc    590102 Nov 23 01:12 input.tar.gz
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc         0 Nov 23 01:12 boinc_lockfile
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc      2784 Nov 23 01:12 pandaJob.out
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc    989784 Nov 23 01:16 agis_schedconf.cvmfs.json
[2025-11-24 02:35:22] drwx------. 5 boinc boinc      4096 Nov 23 01:16 pilot3
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc       533 Nov 24 02:11 boinc_task_state.xml
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc 907870066 Nov 24 02:31 HITS.47523449._000770.pool.root.1
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc      1030 Nov 24 02:32 memory_monitor_summary.json
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc   1526164 Nov 24 02:32 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc   2557741 Nov 24 02:32 log.47523449._000770.job.log.tgz.1
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc        95 Nov 24 02:34 pilot_heartbeat.json
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc      7278 Nov 24 02:34 heartbeat.json
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc      8192 Nov 24 02:35 boinc_mmap_file
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc        29 Nov 24 02:35 wrapper_checkpoint.txt
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc      4883 Nov 24 02:35 pilotlog.txt
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc  12116812 Nov 24 02:35 log.47523449._000770.job.log.1
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc       353 Nov 24 02:35 output.list
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc       620 Nov 24 02:35 runtime_log
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc  14694400 Nov 24 02:35 result.tar.gz
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc      8817 Nov 24 02:35 runtime_log.err
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc       662 Nov 24 02:35 FqZMDmcrGg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuEHKDmx1lxFo.diag
[2025-11-24 02:35:22] -rw-r--r--. 1 boinc boinc     21504 Nov 24 02:35 stderr.txt
[2025-11-24 02:35:22] HITS file was successfully produced:
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc 907870066 Nov 24 02:31 shared/HITS.pool.root.1
[2025-11-24 02:35:22]  *** Contents of shared directory: ***
[2025-11-24 02:35:22] total 1299380
[2025-11-24 02:35:22] -rw-r--r--. 2 boinc boinc 407386603 Nov 23 01:12 ATLAS.root_0
[2025-11-24 02:35:22] -rw-r--r--. 2 boinc boinc     15847 Nov 23 01:12 start_atlas.sh
[2025-11-24 02:35:22] -rw-r--r--. 2 boinc boinc    590102 Nov 23 01:12 input.tar.gz
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc 907870066 Nov 24 02:31 HITS.pool.root.1
[2025-11-24 02:35:22] -rw-------. 1 boinc boinc  14694400 Nov 24 02:35 result.tar.gz
02:35:23 (4696): run_atlas exited; CPU time 336572.813724
02:35:23 (4696): called boinc_finish(0)

</stderr_txt>
]]>

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