Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:19:52 (12307): wrapper (7.7.26015): starting
03:19:52 (12307): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 03:19:52] Arguments: --nthreads 8
[2025-11-23 03:19:52] Threads: 8
[2025-11-23 03:19:52] Checking for CVMFS
[2025-11-23 03:19:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:19:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:19:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:19:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:19:54] 2.11.2.0 31313 280267 142312 153193 1 75 17248228 25165825 4632 130560 2 126731226 99.858 84323855 3103 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 03:19:54] CVMFS is ok
[2025-11-23 03:19:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:19:54] Checking for apptainer binary...
[2025-11-23 03:19:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:19:54] Running /usr/bin/apptainer --version
[2025-11-23 03:19:54] apptainer version 1.3.2-1.el7
[2025-11-23 03:19:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:20:01] cg-vwn451.simple-grid.lan
[2025-11-23 03:20:01] apptainer works
[2025-11-23 03:20:01] Set ATHENA_PROC_NUMBER=8
[2025-11-23 03:20:01] Set ATHENA_CORE_NUMBER=8
[2025-11-23 03:20:01] Starting ATLAS job with PandaID=6893835449
[2025-11-23 03:20:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/26 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 05:18:02]  *** The last 200 lines of the pilot log: ***
[2025-11-24 05:18:02] 2025-11-24 04:17:08,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:18:02] 2025-11-24 04:17:08,845 | INFO     | time since job start (93178s) is within the limit (172800.0s)
[2025-11-24 05:18:02] 2025-11-24 04:17:10,852 | INFO     | time since job start (93180s) is within the limit (172800.0s)
[2025-11-24 05:18:02] 2025-11-24 04:17:11,149 | INFO     | monitor loop #6256: job 0:6893835449 is in state 'finished'
[2025-11-24 05:18:02] 2025-11-24 04:17:11,149 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:18:02] 2025-11-24 04:17:12,859 | INFO     | time since job start (93182s) is within the limit (172800.0s)
[2025-11-24 05:18:02] 2025-11-24 04:17:13,654 | INFO     | monitor loop #6257: job 0:6893835449 is in state 'finished'
[2025-11-24 05:18:02] 2025-11-24 04:17:13,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:18:02] 2025-11-24 04:17:14,868 | INFO     | time since job start (93184s) is within the limit (172800.0s)
[2025-11-24 05:18:02] 2025-11-24 04:17:16,164 | INFO     | monitor loop #6258: job 0:6893835449 is in state 'finished'
[2025-11-24 05:18:02] 2025-11-24 04:17:16,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:18:02] 2025-11-24 04:17:16,881 | INFO     | time since job start (93186s) is within the limit (172800.0s)
[2025-11-24 05:18:02] 2025-11-24 04:17:18,669 | INFO     | monitor loop #6259: job 0:6893835449 is in state 'finished'
[2025-11-24 05:18:02] 2025-11-24 04:17:18,669 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 05:18:02] 2025-11-24 04:17:18,888 | INFO     | time since job start (93188s) is within the limit (172800.0s)
[2025-11-24 05:18:02] 2025-11-24 04:17:19,778 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 05:18:02] 2025-11-24 04:17:19,779 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 05:18:02] 2025-11-24 04:17:19,781 | INFO     | using path: /var/lib/boinc/slots/26/PanDA_Pilot-6893835449/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 05:18:02] 2025-11-24 04:17:19,782 | INFO     | extracted standard info from prmon json
[2025-11-24 05:18:02] 2025-11-24 04:17:19,782 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 05:18:02] 2025-11-24 04:17:19,782 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 05:18:02] 2025-11-24 04:17:19,815 | INFO     | fitting pss+swap vs Time
[2025-11-24 05:18:02] 2025-11-24 04:17:19,818 | INFO     | sum of square deviations: 1084662130444.1174
[2025-11-24 05:18:02] 2025-11-24 04:17:19,933 | INFO     | sum of deviations: 4503908059925.5625
[2025-11-24 05:18:02] 2025-11-24 04:17:19,933 | INFO     | mean x: 1763911451.8115942
[2025-11-24 05:18:02] 2025-11-24 04:17:19,934 | INFO     | mean y: 2834978.4914361
[2025-11-24 05:18:02] 2025-11-24 04:17:19,934 | INFO     | intersect: -7321561053.991368
[2025-11-24 05:18:02] 2025-11-24 04:17:19,950 | INFO     | chi2: 26.535402554583026
[2025-11-24 05:18:02] 2025-11-24 04:17:19,953 | INFO     | sum of square deviations: 1073980016462.9854
[2025-11-24 05:18:02] 2025-11-24 04:17:20,059 | INFO     | sum of deviations: 5006626324246.112
[2025-11-24 05:18:02] 2025-11-24 04:17:20,060 | INFO     | mean x: 1763911299.3159287
[2025-11-24 05:18:02] 2025-11-24 04:17:20,060 | INFO     | mean y: 2842153.738268341
[2025-11-24 05:18:02] 2025-11-24 04:17:20,060 | INFO     | intersect: -8220071317.105311
[2025-11-24 05:18:02] 2025-11-24 04:17:20,062 | INFO     | chi2: 23.32673076996259
[2025-11-24 05:18:02] 2025-11-24 04:17:20,062 | INFO     | current chi2=23.32673076996259 (change=12.092041106292745 %)
[2025-11-24 05:18:02] 2025-11-24 04:17:20,062 | INFO     | right removable region: 1512
[2025-11-24 05:18:02] 2025-11-24 04:17:20,064 | INFO     | sum of square deviations: 1073978801952.9861
[2025-11-24 05:18:02] 2025-11-24 04:17:20,139 | INFO     | sum of deviations: 3865106608444.3916
[2025-11-24 05:18:02] 2025-11-24 04:17:20,139 | INFO     | mean x: 1763911604.3159287
[2025-11-24 05:18:02] 2025-11-24 04:17:20,139 | INFO     | mean y: 2844096.913417052
[2025-11-24 05:18:02] 2025-11-24 04:17:20,140 | INFO     | intersect: -6345238738.758504
[2025-11-24 05:18:02] 2025-11-24 04:17:20,141 | INFO     | chi2: 21.703100194609164
[2025-11-24 05:18:02] 2025-11-24 04:17:20,142 | INFO     | current chi2=21.703100194609164 (change=18.210774643549765 %)
[2025-11-24 05:18:02] 2025-11-24 04:17:20,142 | INFO     | left removable region: 10
[2025-11-24 05:18:02] 2025-11-24 04:17:20,144 | INFO     | sum of square deviations: 1050724323648.2991
[2025-11-24 05:18:02] 2025-11-24 04:17:20,204 | INFO     | sum of deviations: 3881736234091.278
[2025-11-24 05:18:02] 2025-11-24 04:17:20,204 | INFO     | mean x: 1763911573.8255658
[2025-11-24 05:18:02] 2025-11-24 04:17:20,205 | INFO     | mean y: 2861242.4513981356
[2025-11-24 05:18:02] 2025-11-24 04:17:20,205 | INFO     | intersect: -6513633441.975008
[2025-11-24 05:18:02] 2025-11-24 04:17:20,207 | INFO     | chi2: 13.862999414950398
[2025-11-24 05:18:02] 2025-11-24 04:17:20,207 | INFO     | current memory leak: 3.69 B/s (using 1502 data points, chi2=13.86)
[2025-11-24 05:18:02] 2025-11-24 04:17:20,210 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 05:18:02] 2025-11-24 04:17:20,210 | INFO     | ..............................
[2025-11-24 05:18:02] 2025-11-24 04:17:20,210 | INFO     | . Timing measurements:
[2025-11-24 05:18:02] 2025-11-24 04:17:20,210 | INFO     | . get job = 0 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,211 | INFO     | . initial setup = 11 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,211 | INFO     | . payload setup = 168 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,211 | INFO     | . stage-in = 0 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,211 | INFO     | . payload execution = 92722 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,211 | INFO     | . stage-out = 6 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,211 | INFO     | . log creation = 2 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,211 | INFO     | ..............................
[2025-11-24 05:18:02] 2025-11-24 04:17:20,728 | INFO     | 
[2025-11-24 05:18:02] 2025-11-24 04:17:20,728 | INFO     | job summary report
[2025-11-24 05:18:02] 2025-11-24 04:17:20,728 | INFO     | --------------------------------------------------
[2025-11-24 05:18:02] 2025-11-24 04:17:20,728 | INFO     | PanDA job id: 6893835449
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | task id: 47523449
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | errors: (none)
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | pilot state: finished 
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | transexitcode: 0
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | exeerrorcode: 0
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | exeerrordiag: 
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | exitcode: 0
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | exitmsg: OK
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | cpuconsumptiontime: 344920 s
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | nevents: 1000
[2025-11-24 05:18:02] 2025-11-24 04:17:20,729 | INFO     | neventsw: 0
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | pid: 22706
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | pgrp: 22706
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | corecount: 8
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | event service: False
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | sizes: {0: 2298577, 1: 2298832, 12: 2298832, 23: 2298860, 33: 2298888, 44: 2298944, 55: 2299100, 66: 2299128, 76: 2299156, 87: 2299212, 93: 2299502, 98: 2299810, 9
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | --------------------------------------------------
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | 
[2025-11-24 05:18:02] 2025-11-24 04:17:20,730 | INFO     | executing command: ls -lF /var/lib/boinc/slots/26
[2025-11-24 05:18:02] 2025-11-24 04:17:20,918 | INFO     | time since job start (93190s) is within the limit (172800.0s)
[2025-11-24 05:18:02] 2025-11-24 04:17:21,318 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,318 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,318 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,318 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,318 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,318 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,319 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,320 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 05:18:02] 2025-11-24 04:17:21,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,320 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 05:18:02] 2025-11-24 04:17:21,320 | INFO     | job 6893835449 has completed (purged errors)
[2025-11-24 05:18:02] 2025-11-24 04:17:21,320 | INFO     | overall cleanup function is called
[2025-11-24 05:18:02] 2025-11-24 04:17:22,341 | INFO     | --- collectZombieJob: --- 10, [22706]
[2025-11-24 05:18:02] 2025-11-24 04:17:22,341 | INFO     | zombie collector waiting for pid 22706
[2025-11-24 05:18:02] 2025-11-24 04:17:22,342 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 05:18:02] 2025-11-24 04:17:22,342 | INFO     | collected zombie processes
[2025-11-24 05:18:02] 2025-11-24 04:17:22,342 | INFO     | will attempt to kill all subprocesses of pid=22706
[2025-11-24 05:18:02] 2025-11-24 04:17:22,453 | INFO     | process IDs to be killed: [22706] (in reverse order)
[2025-11-24 05:18:02] 2025-11-24 04:17:23,028 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 05:18:02] 2025-11-24 04:17:23,028 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 05:18:02] 2025-11-24 04:17:23,032 | INFO     | did not find any defunct processes belonging to 22706
[2025-11-24 05:18:02] 2025-11-24 04:17:23,035 | INFO     | did not find any defunct processes belonging to 22706
[2025-11-24 05:18:02] 2025-11-24 04:17:23,093 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 05:18:02] 2025-11-24 04:17:23,094 | INFO     | ready for new job
[2025-11-24 05:18:02] 2025-11-24 04:17:23,094 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 05:18:02] 2025-11-24 04:17:23,101 | INFO     | ***************************************
[2025-11-24 05:18:02] 2025-11-24 04:17:23,102 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 05:18:02] 2025-11-24 04:17:23,102 | INFO     | ***************************************
[2025-11-24 05:18:02] 2025-11-24 04:17:23,102 | INFO     | 
[2025-11-24 05:18:02] 2025-11-24 04:17:23,103 | INFO     | pilot is running in a VM
[2025-11-24 05:18:02] 2025-11-24 04:17:23,103 | INFO     | architecture information:
[2025-11-24 05:18:02] 2025-11-24 04:17:23,109 | INFO     | executing command: cat /etc/os-release
[2025-11-24 05:18:02] 2025-11-24 04:17:23,448 | INFO     | cat /etc/os-release:
[2025-11-24 05:18:02] NAME="CentOS Linux"
[2025-11-24 05:18:02] VERSION="7 (Core)"
[2025-11-24 05:18:02] ID="centos"
[2025-11-24 05:18:02] ID_LIKE="rhel fedora"
[2025-11-24 05:18:02] VERSION_ID="7"
[2025-11-24 05:18:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 05:18:02] ANSI_COLOR="0;31"
[2025-11-24 05:18:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 05:18:02] HOME_URL="https://www.centos.org/"
[2025-11-24 05:18:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 05:18:02] 
[2025-11-24 05:18:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 05:18:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 05:18:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 05:18:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 05:18:02] 
[2025-11-24 05:18:02] 2025-11-24 04:17:23,448 | INFO     | ***************************************
[2025-11-24 05:18:02] 2025-11-24 04:17:23,951 | INFO     | executing command: df -mP /var/lib/boinc/slots/26
[2025-11-24 05:18:02] 2025-11-24 04:17:24,021 | INFO     | sufficient remaining disk space (494933114880 B)
[2025-11-24 05:18:02] 2025-11-24 04:17:24,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 05:18:02] 2025-11-24 04:17:24,021 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 05:18:02] 2025-11-24 04:17:24,022 | INFO     | update_server=False
[2025-11-24 05:18:02] 2025-11-24 04:17:24,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 05:18:02] 2025-11-24 04:17:24,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 05:18:02] 2025-11-24 04:17:24,364 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 05:18:02] 2025-11-24 04:17:24,466 | INFO     | all payload control threads have been joined
[2025-11-24 05:18:02] 2025-11-24 04:17:24,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:18:02] 2025-11-24 04:17:24,687 | INFO     | aborting loop
[2025-11-24 05:18:02] 2025-11-24 04:17:25,028 | INFO     | [job] retrieve thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,036 | INFO     | all job control threads have been joined
[2025-11-24 05:18:02] 2025-11-24 04:17:25,037 | INFO     | all data control threads have been joined
[2025-11-24 05:18:02] 2025-11-24 04:17:25,268 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,321 | INFO     | [payload] failed_post thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,366 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 05:18:02] 2025-11-24 04:17:25,407 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,408 | INFO     | [data] copytool_in thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,472 | INFO     | [payload] control thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,496 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,497 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:25,693 | INFO     | [job] job monitor thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:26,040 | INFO     | [job] validate thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:26,042 | INFO     | [data] control thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:26,045 | INFO     | [job] control thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:26,368 | INFO     | [payload] validate_post thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:26,371 | INFO     | [data] copytool_out thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:26,372 | INFO     | [job] queue monitor thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:28,032 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 05:18:02] 2025-11-24 04:17:52,962 | INFO     | [monitor] cgroup control has ended
[2025-11-24 05:18:02] 2025-11-24 04:17:53,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444775786304)>', '<ExcThread(monitor, started 140444314871552)>']
[2025-11-24 05:18:02] 2025-11-24 04:17:54,084 | INFO     | PID=16096 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 05:18:02] 2025-11-24 04:17:54,085 | INFO     | .. there are 9 such processes running
[2025-11-24 05:18:02] 2025-11-24 04:17:54,085 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 05:18:02] 2025-11-24 04:17:54,085 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 05:18:02] 2025-11-24 04:17:54,085 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 05:18:02] 2025-11-24 04:17:54,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 05:18:02] 2025-11-24 04:17:54,085 | INFO     | [monitor] control thread has ended
[2025-11-24 05:18:02] 2025-11-24 04:17:58,066 | INFO     | all workflow threads have been joined
[2025-11-24 05:18:02] 2025-11-24 04:17:58,066 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 05:18:02] 2025-11-24 04:17:58,067 | INFO     | traces error code: 0
[2025-11-24 05:18:02] 2025-11-24 04:17:58,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 05:18:02] 2025-11-24 04:17:58,494 [wrapper] ==== pilot stdout END ====
[2025-11-24 05:18:02] 2025-11-24 04:17:58,593 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 05:18:02] 2025-11-24 04:17:58,691 [wrapper] pilotpid: 16096
[2025-11-24 05:18:02] 2025-11-24 04:17:58,789 [wrapper] Pilot exit status: 0
[2025-11-24 05:18:02] 2025-11-24 04:17:59,131 [wrapper] pandaids: 6893835449
[2025-11-24 05:18:02] 2025-11-24 04:18:00,089 [wrapper] cleanup supervisor_pilot 15658 16097
[2025-11-24 05:18:02] 2025-11-24 04:18:00,158 [wrapper] Test setup, not cleaning
[2025-11-24 05:18:02] 2025-11-24 04:18:00,258 [wrapper] apfmon messages muted
[2025-11-24 05:18:02] 2025-11-24 04:18:00,328 [wrapper] ==== wrapper stdout END ====
[2025-11-24 05:18:02] 2025-11-24 04:18:00,390 [wrapper] ==== wrapper stderr END ====
[2025-11-24 05:18:02]  *** Error codes and diagnostics ***
[2025-11-24 05:18:02]     "exeErrorCode": 0,
[2025-11-24 05:18:02]     "exeErrorDiag": "",
[2025-11-24 05:18:02]     "pilotErrorCode": 0,
[2025-11-24 05:18:02]     "pilotErrorDiag": "",
[2025-11-24 05:18:02]  *** Listing of results directory ***
[2025-11-24 05:18:02] total 1333292
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc    576529 Nov 20 11:06 pilot3.tar.gz
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc      5112 Nov 20 11:14 queuedata.json
[2025-11-24 05:18:02] -rwx------. 1 boinc boinc     36292 Nov 20 11:14 runpilot2-wrapper.sh
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc       100 Nov 23 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 05:18:02] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 03:19 run_atlas
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc       105 Nov 23 03:19 job.xml
[2025-11-24 05:18:02] -rw-r--r--. 2 boinc boinc 411915111 Nov 23 03:19 EVNT.47493127._000093.pool.root.1
[2025-11-24 05:18:02] -rw-r--r--. 2 boinc boinc    590100 Nov 23 03:19 input.tar.gz
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc      6393 Nov 23 03:19 init_data.xml
[2025-11-24 05:18:02] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:19 start_atlas.sh
[2025-11-24 05:18:02] drwxrwx--x. 2 boinc boinc        68 Nov 23 03:19 shared
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc         0 Nov 23 03:19 boinc_lockfile
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc      2784 Nov 23 03:20 pandaJob.out
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc    989784 Nov 23 03:24 agis_schedconf.cvmfs.json
[2025-11-24 05:18:02] drwx------. 5 boinc boinc      4096 Nov 23 03:24 pilot3
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc       533 Nov 24 04:53 boinc_task_state.xml
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc 919444452 Nov 24 05:14 HITS.47523449._000925.pool.root.1
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc      1030 Nov 24 05:15 memory_monitor_summary.json
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc   1526164 Nov 24 05:15 agis_ddmendpoints.agis.ALL.json
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc   2586372 Nov 24 05:15 log.47523449._000925.job.log.tgz.1
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc      8629 Nov 24 05:17 heartbeat.json
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc        95 Nov 24 05:17 pilot_heartbeat.json
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc      8192 Nov 24 05:17 boinc_mmap_file
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc        29 Nov 24 05:17 wrapper_checkpoint.txt
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc      4885 Nov 24 05:17 pilotlog.txt
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc  12424493 Nov 24 05:18 log.47523449._000925.job.log.1
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc       353 Nov 24 05:18 output.list
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc       620 Nov 24 05:18 runtime_log
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc  15032320 Nov 24 05:18 result.tar.gz
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc      8833 Nov 24 05:18 runtime_log.err
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc       662 Nov 24 05:18 HYwNDmlrGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlHGKDmpKNVSm.diag
[2025-11-24 05:18:02] -rw-r--r--. 1 boinc boinc     21451 Nov 24 05:18 stderr.txt
[2025-11-24 05:18:02] HITS file was successfully produced:
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc 919444452 Nov 24 05:14 shared/HITS.pool.root.1
[2025-11-24 05:18:02]  *** Contents of shared directory: ***
[2025-11-24 05:18:02] total 1315436
[2025-11-24 05:18:02] -rw-r--r--. 2 boinc boinc 411915111 Nov 23 03:19 ATLAS.root_0
[2025-11-24 05:18:02] -rw-r--r--. 2 boinc boinc    590100 Nov 23 03:19 input.tar.gz
[2025-11-24 05:18:02] -rw-r--r--. 2 boinc boinc     15847 Nov 23 03:19 start_atlas.sh
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc 919444452 Nov 24 05:14 HITS.pool.root.1
[2025-11-24 05:18:02] -rw-------. 1 boinc boinc  15032320 Nov 24 05:18 result.tar.gz
05:18:04 (12307): run_atlas exited; CPU time 345424.121095
05:18:04 (12307): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN