Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:46:44 (1244934): wrapper (7.7.26015): starting
01:46:44 (1244934): wrapper: running run_atlas (--nthreads 8)
[2025-11-21 01:46:44] Arguments: --nthreads 8
[2025-11-21 01:46:44] Threads: 8
[2025-11-21 01:46:44] Checking for CVMFS
[2025-11-21 01:46:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 01:46:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 01:46:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 01:46:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 01:46:44] 2.13.2.0 6867 26300 253008 153111 1 88 22259540 40960001 4717 16776704 0 19994736 99.591 18776569 29155 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 01:46:44] CVMFS is ok
[2025-11-21 01:46:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:46:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:46:44] Further information can be found at the LHC@home message board.
[2025-11-21 01:46:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:46:44] Checking for apptainer binary...
[2025-11-21 01:46:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 01:46:44] Running /usr/bin/apptainer --version
[2025-11-21 01:46:44] apptainer version 1.4.4-1.el9
[2025-11-21 01:46:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:46:44] c-211-11.aglt2.org
[2025-11-21 01:46:44] apptainer works
[2025-11-21 01:46:44] Set ATHENA_PROC_NUMBER=8
[2025-11-21 01:46:44] Set ATHENA_CORE_NUMBER=8
[2025-11-21 01:46:44] Starting ATLAS job with PandaID=6893835411
[2025-11-21 01:46:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:39:13]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:39:13] 2025-11-22 00:38:25,796 | INFO     | monitor loop #4019: job 0:6893835411 is in state 'finished'
[2025-11-21 19:39:13] 2025-11-22 00:38:25,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:39:13] 2025-11-22 00:38:27,760 | INFO     | time since job start (64292s) is within the limit (172800.0s)
[2025-11-21 19:39:13] 2025-11-22 00:38:28,307 | INFO     | monitor loop #4020: job 0:6893835411 is in state 'finished'
[2025-11-21 19:39:13] 2025-11-22 00:38:28,308 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:39:13] 2025-11-22 00:38:29,789 | INFO     | time since job start (64294s) is within the limit (172800.0s)
[2025-11-21 19:39:13] 2025-11-22 00:38:30,816 | INFO     | monitor loop #4021: job 0:6893835411 is in state 'finished'
[2025-11-21 19:39:13] 2025-11-22 00:38:30,816 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:39:13] 2025-11-22 00:38:31,819 | INFO     | time since job start (64296s) is within the limit (172800.0s)
[2025-11-21 19:39:13] 2025-11-22 00:38:33,326 | INFO     | monitor loop #4022: job 0:6893835411 is in state 'finished'
[2025-11-21 19:39:13] 2025-11-22 00:38:33,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:39:13] 2025-11-22 00:38:33,529 | INFO     | PID=1248615 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:39:13] 2025-11-22 00:38:33,529 | INFO     | .. there are 12 such processes running
[2025-11-21 19:39:13] 2025-11-22 00:38:34,534 | INFO     | time since job start (64299s) is within the limit (172800.0s)
[2025-11-21 19:39:13] 2025-11-22 00:38:35,834 | INFO     | monitor loop #4023: job 0:6893835411 is in state 'finished'
[2025-11-21 19:39:13] 2025-11-22 00:38:35,834 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:39:13] 2025-11-22 00:38:36,387 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 19:39:13] 2025-11-22 00:38:36,514 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2471.6007916666667
[2025-11-21 19:39:13] 2025-11-22 00:38:36,569 | INFO     | time since job start (64301s) is within the limit (172800.0s)
[2025-11-21 19:39:13] 2025-11-22 00:38:36,624 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893835411/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:39:13] 2025-11-22 00:38:36,625 | INFO     | extracted standard info from prmon json
[2025-11-21 19:39:13] 2025-11-22 00:38:36,625 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:39:13] 2025-11-22 00:38:36,625 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:39:13] 2025-11-22 00:38:36,825 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:39:13] 2025-11-22 00:38:36,828 | INFO     | sum of square deviations: 362139679442.78656
[2025-11-21 19:39:13] 2025-11-22 00:38:36,938 | INFO     | sum of deviations: -2934542021156.162
[2025-11-21 19:39:13] 2025-11-22 00:38:36,938 | INFO     | mean x: 1763739729.911681
[2025-11-21 19:39:13] 2025-11-22 00:38:36,938 | INFO     | mean y: 2870110.4928774927
[2025-11-21 19:39:13] 2025-11-22 00:38:36,938 | INFO     | intersect: 14295058030.281857
[2025-11-21 19:39:13] 2025-11-22 00:38:36,940 | INFO     | chi2: 49.30923193797702
[2025-11-21 19:39:13] 2025-11-22 00:38:36,946 | INFO     | sum of square deviations: 357007718290.195
[2025-11-21 19:39:13] 2025-11-22 00:38:37,019 | INFO     | sum of deviations: -2508367601696.0874
[2025-11-21 19:39:13] 2025-11-22 00:38:37,019 | INFO     | mean x: 1763739577.4255726
[2025-11-21 19:39:13] 2025-11-22 00:38:37,019 | INFO     | mean y: 2882773.518129771
[2025-11-21 19:39:13] 2025-11-22 00:38:37,019 | INFO     | intersect: 12395072037.749395
[2025-11-21 19:39:13] 2025-11-22 00:38:37,021 | INFO     | chi2: 44.012779947932074
[2025-11-21 19:39:13] 2025-11-22 00:38:37,025 | INFO     | current chi2=44.012779947932074 (change=10.741298904649371 %)
[2025-11-21 19:39:13] 2025-11-22 00:38:37,025 | INFO     | right removable region: 1047
[2025-11-21 19:39:13] 2025-11-22 00:38:37,027 | INFO     | sum of square deviations: 357005848030.19495
[2025-11-21 19:39:13] 2025-11-22 00:38:37,107 | INFO     | sum of deviations: -3170157274849.5293
[2025-11-21 19:39:13] 2025-11-22 00:38:37,107 | INFO     | mean x: 1763739882.4255726
[2025-11-21 19:39:13] 2025-11-22 00:38:37,107 | INFO     | mean y: 2877097.967557252
[2025-11-21 19:39:13] 2025-11-22 00:38:37,107 | INFO     | intersect: 15664617234.89881
[2025-11-21 19:39:13] 2025-11-22 00:38:37,109 | INFO     | chi2: 47.545816101953214
[2025-11-21 19:39:13] 2025-11-22 00:38:37,109 | INFO     | current chi2=47.545816101953214 (change=3.576238701592215 %)
[2025-11-21 19:39:13] 2025-11-22 00:38:37,109 | INFO     | left removable region: 10
[2025-11-21 19:39:13] 2025-11-22 00:38:37,111 | INFO     | sum of square deviations: 345885172560.68475
[2025-11-21 19:39:13] 2025-11-22 00:38:37,140 | INFO     | sum of deviations: -2707939406375.4463
[2025-11-21 19:39:13] 2025-11-22 00:38:37,140 | INFO     | mean x: 1763739851.9527483
[2025-11-21 19:39:13] 2025-11-22 00:38:37,140 | INFO     | mean y: 2893880.2970106076
[2025-11-21 19:39:13] 2025-11-22 00:38:37,140 | INFO     | intersect: 13811235568.779442
[2025-11-21 19:39:13] 2025-11-22 00:38:37,142 | INFO     | chi2: 41.10458200805213
[2025-11-21 19:39:13] 2025-11-22 00:38:37,142 | INFO     | current memory leak: -7.83 B/s (using 1037 data points, chi2=41.10)
[2025-11-21 19:39:13] 2025-11-22 00:38:37,143 | INFO     | could have reported an average CPU frequency of 2619 MHz (38 samples)
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | ..............................
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . Timing measurements:
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . get job = 0 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . initial setup = 2 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . payload setup = 5 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . stage-in = 0 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . payload execution = 64223 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . stage-out = 8 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | . log creation = 3 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,144 | INFO     | ..............................
[2025-11-21 19:39:13] 2025-11-22 00:38:37,259 | INFO     | 
[2025-11-21 19:39:13] 2025-11-22 00:38:37,259 | INFO     | job summary report
[2025-11-21 19:39:13] 2025-11-22 00:38:37,259 | INFO     | --------------------------------------------------
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | PanDA job id: 6893835411
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | task id: 47523449
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | errors: (none)
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | pilot state: finished 
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | transexitcode: 0
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | exeerrorcode: 0
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | exeerrordiag: 
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | exitcode: 0
[2025-11-21 19:39:13] 2025-11-22 00:38:37,260 | INFO     | exitmsg: OK
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | cpuconsumptiontime: 320808 s
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | nevents: 1000
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | neventsw: 0
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | pid: 1254984
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | pgrp: 1254984
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | corecount: 8
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | event service: False
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | sizes: {0: 2298803, 4: 2299065, 11: 2299093, 64233: 2353197, 64243: 2362191, 64244: 2362247, 64286: 2362621}
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | --------------------------------------------------
[2025-11-21 19:39:13] 2025-11-22 00:38:37,261 | INFO     | 
[2025-11-21 19:39:13] 2025-11-22 00:38:37,262 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-21 19:39:13] 2025-11-22 00:38:37,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,313 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,313 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,315 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,315 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,315 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,319 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,319 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:39:13] 2025-11-22 00:38:37,319 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,319 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:39:13] 2025-11-22 00:38:37,320 | INFO     | job 6893835411 has completed (purged errors)
[2025-11-21 19:39:13] 2025-11-22 00:38:37,320 | INFO     | overall cleanup function is called
[2025-11-21 19:39:13] 2025-11-22 00:38:38,341 | INFO     | --- collectZombieJob: --- 10, [1254984]
[2025-11-21 19:39:13] 2025-11-22 00:38:38,341 | INFO     | zombie collector waiting for pid 1254984
[2025-11-21 19:39:13] 2025-11-22 00:38:38,341 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:39:13] 2025-11-22 00:38:38,342 | INFO     | collected zombie processes
[2025-11-21 19:39:13] 2025-11-22 00:38:38,342 | INFO     | will attempt to kill all subprocesses of pid=1254984
[2025-11-21 19:39:13] 2025-11-22 00:38:40,075 | INFO     | process IDs to be killed: [1254984] (in reverse order)
[2025-11-21 19:39:13] 2025-11-22 00:38:40,467 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:39:13] 2025-11-22 00:38:40,468 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:39:13] 2025-11-22 00:38:40,542 | INFO     | did not find any defunct processes belonging to 1254984
[2025-11-21 19:39:13] 2025-11-22 00:38:40,623 | INFO     | did not find any defunct processes belonging to 1254984
[2025-11-21 19:39:13] 2025-11-22 00:38:40,638 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:39:13] 2025-11-22 00:38:40,638 | INFO     | ready for new job
[2025-11-21 19:39:13] 2025-11-22 00:38:40,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:39:13] 2025-11-22 00:38:40,656 | INFO     | ***************************************
[2025-11-21 19:39:13] 2025-11-22 00:38:40,656 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:39:13] 2025-11-22 00:38:40,681 | INFO     | ***************************************
[2025-11-21 19:39:13] 2025-11-22 00:38:40,681 | INFO     | 
[2025-11-21 19:39:13] 2025-11-22 00:38:40,689 | INFO     | architecture information:
[2025-11-21 19:39:13] 2025-11-22 00:38:40,704 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:39:13] 2025-11-22 00:38:40,851 | INFO     | cat /etc/os-release:
[2025-11-21 19:39:13] NAME="CentOS Linux"
[2025-11-21 19:39:13] VERSION="7 (Core)"
[2025-11-21 19:39:13] ID="centos"
[2025-11-21 19:39:13] ID_LIKE="rhel fedora"
[2025-11-21 19:39:13] VERSION_ID="7"
[2025-11-21 19:39:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:39:13] ANSI_COLOR="0;31"
[2025-11-21 19:39:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:39:13] HOME_URL="https://www.centos.org/"
[2025-11-21 19:39:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:39:13] 
[2025-11-21 19:39:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:39:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:39:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:39:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:39:13] 
[2025-11-21 19:39:13] 2025-11-22 00:38:40,851 | INFO     | ***************************************
[2025-11-21 19:39:13] 2025-11-22 00:38:41,358 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-21 19:39:13] 2025-11-22 00:38:41,568 | INFO     | sufficient remaining disk space (56623104000 B)
[2025-11-21 19:39:13] 2025-11-22 00:38:41,568 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:39:13] 2025-11-22 00:38:41,568 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:39:13] 2025-11-22 00:38:41,569 | INFO     | update_server=False
[2025-11-21 19:39:13] 2025-11-22 00:38:41,569 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:39:13] 2025-11-22 00:38:41,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:39:13] 2025-11-22 00:38:41,894 | INFO     | aborting loop
[2025-11-21 19:39:13] 2025-11-22 00:38:41,950 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:39:13] 2025-11-22 00:38:42,313 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:39:13] 2025-11-22 00:38:42,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:39:13] 2025-11-22 00:38:42,605 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:42,677 | INFO     | all data control threads have been joined
[2025-11-21 19:39:13] 2025-11-22 00:38:42,731 | INFO     | [job] validate thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:42,902 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,137 | INFO     | all payload control threads have been joined
[2025-11-21 19:39:13] 2025-11-22 00:38:43,147 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,153 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,164 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,319 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,329 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,345 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,364 | INFO     | all job control threads have been joined
[2025-11-21 19:39:13] 2025-11-22 00:38:43,698 | INFO     | [data] control thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:43,986 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:44,048 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:44,161 | INFO     | [payload] control thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:44,347 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:44,398 | INFO     | [job] control thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:45,965 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:39:13] 2025-11-22 00:38:55,489 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:39:13] 2025-11-22 00:38:55,641 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830685370176)>', '<ExcThread(monitor, started 139829975185152)>']
[2025-11-21 19:39:13] 2025-11-22 00:39:00,667 | INFO     | all workflow threads have been joined
[2025-11-21 19:39:13] 2025-11-22 00:39:00,667 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:39:13] 2025-11-22 00:39:00,668 | INFO     | traces error code: 0
[2025-11-21 19:39:13] 2025-11-22 00:39:00,668 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:39:13] 2025-11-22 00:39:11,102 | INFO     | PID=1248615 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:39:13] 2025-11-22 00:39:11,102 | INFO     | .. there are 12 such processes running
[2025-11-21 19:39:13] 2025-11-22 00:39:11,103 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:39:13] 2025-11-22 00:39:11,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:39:13] 2025-11-22 00:39:11,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:39:13] 2025-11-22 00:39:11,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:39:13] 2025-11-22 00:39:11,104 | INFO     | [monitor] control thread has ended
[2025-11-21 19:39:13] 2025-11-22 00:39:11,250 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:39:13] 2025-11-22 00:39:11,270 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:39:13] 2025-11-22 00:39:11,294 [wrapper] pilotpid: 1248615
[2025-11-21 19:39:13] 2025-11-22 00:39:11,310 [wrapper] Pilot exit status: 0
[2025-11-21 19:39:13] 2025-11-22 00:39:11,364 [wrapper] pandaids: 6893835411
[2025-11-21 19:39:13] 2025-11-22 00:39:11,650 [wrapper] cleanup supervisor_pilot 2905002 1248616
[2025-11-21 19:39:13] 2025-11-22 00:39:11,662 [wrapper] Test setup, not cleaning
[2025-11-21 19:39:13] 2025-11-22 00:39:11,680 [wrapper] apfmon messages muted
[2025-11-21 19:39:13] 2025-11-22 00:39:11,713 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:39:13] 2025-11-22 00:39:11,732 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:39:13]  *** Error codes and diagnostics ***
[2025-11-21 19:39:13]     "exeErrorCode": 0,
[2025-11-21 19:39:13]     "exeErrorDiag": "",
[2025-11-21 19:39:13]     "pilotErrorCode": 0,
[2025-11-21 19:39:13]     "pilotErrorDiag": "",
[2025-11-21 19:39:13]  *** Listing of results directory ***
[2025-11-21 19:39:14] total 1314720
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 19:39:14] -rwx------. 1 boincer umatlas     36292 Nov 20 05:11 runpilot2-wrapper.sh
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:12 queuedata.json
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas       100 Nov 21 01:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:39:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 01:46 run_atlas
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas       105 Nov 21 01:46 job.xml
[2025-11-21 19:39:14] -rw-r--r--. 2 boincer umatlas 409705692 Nov 21 01:46 EVNT.47493127._000089.pool.root.1
[2025-11-21 19:39:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 01:46 start_atlas.sh
[2025-11-21 19:39:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 01:46 shared
[2025-11-21 19:39:14] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 01:46 input.tar.gz
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas         0 Nov 21 01:46 boinc_lockfile
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 01:46 pandaJob.out
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas        57 Nov 21 01:46 setup.sh.local
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas    989817 Nov 21 01:46 agis_schedconf.cvmfs.json
[2025-11-21 19:39:14] drwx------. 5 boincer umatlas      4096 Nov 21 01:46 pilot3
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas       533 Nov 21 17:50 boinc_task_state.xml
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas 911813296 Nov 21 19:25 HITS.47523449._000889.pool.root.1
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas      6617 Nov 21 19:30 init_data.xml
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas      1054 Nov 21 19:37 memory_monitor_summary.json
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas   1526164 Nov 21 19:37 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas   2191166 Nov 21 19:37 log.47523449._000889.job.log.tgz.1
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas      8633 Nov 21 19:38 heartbeat.json
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas        29 Nov 21 19:39 wrapper_checkpoint.txt
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas        95 Nov 21 19:39 pilot_heartbeat.json
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas       823 Nov 21 19:39 pilotlog.txt
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas   8227963 Nov 21 19:39 log.47523449._000889.job.log.1
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas       353 Nov 21 19:39 output.list
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas       620 Nov 21 19:39 runtime_log
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas  10434560 Nov 21 19:39 result.tar.gz
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 19:39 boinc_mmap_file
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas      9343 Nov 21 19:39 runtime_log.err
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas       660 Nov 21 19:39 rpTKDmnoGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmFFGKDm2mxMun.diag
[2025-11-21 19:39:14] -rw-r--r--. 1 boincer umatlas     21843 Nov 21 19:39 stderr.txt
[2025-11-21 19:39:14] HITS file was successfully produced:
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas 911813296 Nov 21 19:25 shared/HITS.pool.root.1
[2025-11-21 19:39:14]  *** Contents of shared directory: ***
[2025-11-21 19:39:14] total 1301344
[2025-11-21 19:39:14] -rw-r--r--. 2 boincer umatlas 409705692 Nov 21 01:46 ATLAS.root_0
[2025-11-21 19:39:14] -rw-r--r--. 2 boincer umatlas     15847 Nov 21 01:46 start_atlas.sh
[2025-11-21 19:39:14] -rw-r--r--. 2 boincer umatlas    590098 Nov 21 01:46 input.tar.gz
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas 911813296 Nov 21 19:25 HITS.pool.root.1
[2025-11-21 19:39:14] -rw-------. 1 boincer umatlas  10434560 Nov 21 19:39 result.tar.gz
19:39:35 (1244934): run_atlas exited; CPU time 322304.217906
19:39:35 (1244934): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN