Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:18:37 (620086): wrapper (7.7.26015): starting
05:18:37 (620086): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:18:37] Arguments: --nthreads 8
[2025-11-20 05:18:37] Threads: 8
[2025-11-20 05:18:37] Checking for CVMFS
[2025-11-20 05:18:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:18:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:18:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:18:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:18:40] 2.13.2.0 37103 24941 202708 153078 3 187 26598159 40960000 13909 16776704 0 33406960 99.567 34307258 21673 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:18:40] CVMFS is ok
[2025-11-20 05:18:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:18:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:18:40] Further information can be found at the LHC@home message board.
[2025-11-20 05:18:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:18:40] Checking for apptainer binary...
[2025-11-20 05:18:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:18:40] Running /usr/bin/apptainer --version
[2025-11-20 05:18:40] apptainer version 1.4.4-1.el9
[2025-11-20 05:18:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:18:42] c-211-9.aglt2.org
[2025-11-20 05:18:42] apptainer works
[2025-11-20 05:18:42] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:18:42] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:18:42] Starting ATLAS job with PandaID=6893835344
[2025-11-20 05:18:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:00:14 (2420731): wrapper (7.7.26015): starting
00:00:14 (2420731): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:00:14] Arguments: --nthreads 9
[2025-11-21 00:00:14] Threads: 9
[2025-11-21 00:00:14] This job has been restarted, cleaning up previous attempt
[2025-11-21 00:00:15] Checking for CVMFS
[2025-11-21 00:00:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:00:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:00:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:00:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:00:15] 2.13.2.0 37103 26063 204052 153108 3 120 31568394 40960000 6402 16776704 0 35165272 99.587 35389178 21758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:00:15] CVMFS is ok
[2025-11-21 00:00:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:00:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:00:15] Further information can be found at the LHC@home message board.
[2025-11-21 00:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:00:15] Checking for apptainer binary...
[2025-11-21 00:00:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:00:15] Running /usr/bin/apptainer --version
[2025-11-21 00:00:15] apptainer version 1.4.4-1.el9
[2025-11-21 00:00:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:00:15] c-211-9.aglt2.org
[2025-11-21 00:00:15] apptainer works
[2025-11-21 00:00:15] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:00:15] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:00:15] Starting ATLAS job with PandaID=6893835344
[2025-11-21 00:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 03:06:56]  *** The last 200 lines of the pilot log: ***
[2025-11-22 03:06:56] 2025-11-22 08:06:11,543 | INFO     | time since job start (97544s) is within the limit (172800.0s)
[2025-11-22 03:06:56] 2025-11-22 08:06:13,550 | INFO     | time since job start (97546s) is within the limit (172800.0s)
[2025-11-22 03:06:56] 2025-11-22 08:06:13,654 | INFO     | monitor loop #5491: job 0:6893835344 is in state 'finished'
[2025-11-22 03:06:56] 2025-11-22 08:06:13,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:06:56] 2025-11-22 08:06:15,559 | INFO     | time since job start (97548s) is within the limit (172800.0s)
[2025-11-22 03:06:56] 2025-11-22 08:06:16,168 | INFO     | monitor loop #5492: job 0:6893835344 is in state 'finished'
[2025-11-22 03:06:56] 2025-11-22 08:06:16,168 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:06:56] 2025-11-22 08:06:17,566 | INFO     | time since job start (97550s) is within the limit (172800.0s)
[2025-11-22 03:06:56] 2025-11-22 08:06:18,674 | INFO     | monitor loop #5493: job 0:6893835344 is in state 'finished'
[2025-11-22 03:06:56] 2025-11-22 08:06:18,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:06:56] 2025-11-22 08:06:19,573 | INFO     | time since job start (97552s) is within the limit (172800.0s)
[2025-11-22 03:06:56] 2025-11-22 08:06:20,866 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 03:06:56] 2025-11-22 08:06:20,876 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2649.7552083333335
[2025-11-22 03:06:56] 2025-11-22 08:06:20,893 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893835344/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 03:06:56] 2025-11-22 08:06:20,893 | INFO     | extracted standard info from prmon json
[2025-11-22 03:06:56] 2025-11-22 08:06:20,894 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 03:06:56] 2025-11-22 08:06:20,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 03:06:56] 2025-11-22 08:06:20,921 | INFO     | fitting pss+swap vs Time
[2025-11-22 03:06:56] 2025-11-22 08:06:20,923 | INFO     | sum of square deviations: 1267947944774.8718
[2025-11-22 03:06:56] 2025-11-22 08:06:20,988 | INFO     | sum of deviations: -1753838313935.8323
[2025-11-22 03:06:56] 2025-11-22 08:06:20,989 | INFO     | mean x: 1763749997.7435896
[2025-11-22 03:06:56] 2025-11-22 08:06:20,989 | INFO     | mean y: 3035869.3320825514
[2025-11-22 03:06:56] 2025-11-22 08:06:20,989 | INFO     | intersect: 2442672555.5181046
[2025-11-22 03:06:56] 2025-11-22 08:06:20,991 | INFO     | chi2: 50.337785399128016
[2025-11-22 03:06:56] 2025-11-22 08:06:20,993 | INFO     | sum of square deviations: 1256095086969.513
[2025-11-22 03:06:56] 2025-11-22 08:06:21,061 | INFO     | sum of deviations: -1188172781400.9343
[2025-11-22 03:06:56] 2025-11-22 08:06:21,061 | INFO     | mean x: 1763749845.2584693
[2025-11-22 03:06:56] 2025-11-22 08:06:21,061 | INFO     | mean y: 3043145.4949811795
[2025-11-22 03:06:56] 2025-11-22 08:06:21,061 | INFO     | intersect: 1671419672.9378333
[2025-11-22 03:06:56] 2025-11-22 08:06:21,064 | INFO     | chi2: 46.7472644103002
[2025-11-22 03:06:56] 2025-11-22 08:06:21,064 | INFO     | current chi2=46.7472644103002 (change=7.132854495601264 %)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,064 | INFO     | right removable region: 1593
[2025-11-22 03:06:56] 2025-11-22 08:06:21,066 | INFO     | sum of square deviations: 1256090557423.0273
[2025-11-22 03:06:56] 2025-11-22 08:06:21,131 | INFO     | sum of deviations: -2226531048050.1235
[2025-11-22 03:06:56] 2025-11-22 08:06:21,131 | INFO     | mean x: 1763750150.2578418
[2025-11-22 03:06:56] 2025-11-22 08:06:21,131 | INFO     | mean y: 3041944.9905897113
[2025-11-22 03:06:56] 2025-11-22 08:06:21,132 | INFO     | intersect: 3129444295.0001373
[2025-11-22 03:06:56] 2025-11-22 08:06:21,133 | INFO     | chi2: 48.13042063169099
[2025-11-22 03:06:56] 2025-11-22 08:06:21,134 | INFO     | current chi2=48.13042063169099 (change=4.385105045712371 %)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,134 | INFO     | left removable region: 10
[2025-11-22 03:06:56] 2025-11-22 08:06:21,136 | INFO     | sum of square deviations: 1230272325393.7244
[2025-11-22 03:06:56] 2025-11-22 08:06:21,185 | INFO     | monitor loop #5494: job 0:6893835344 is in state 'finished'
[2025-11-22 03:06:56] 2025-11-22 08:06:21,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,200 | INFO     | sum of deviations: -1717372159466.8267
[2025-11-22 03:06:56] 2025-11-22 08:06:21,200 | INFO     | mean x: 1763750119.7776375
[2025-11-22 03:06:56] 2025-11-22 08:06:21,200 | INFO     | mean y: 3052715.304485155
[2025-11-22 03:06:56] 2025-11-22 08:06:21,200 | INFO     | intersect: 2465121713.721579
[2025-11-22 03:06:56] 2025-11-22 08:06:21,202 | INFO     | chi2: 43.72625659882436
[2025-11-22 03:06:56] 2025-11-22 08:06:21,202 | INFO     | current memory leak: -1.40 B/s (using 1583 data points, chi2=43.73)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,204 | INFO     | could have reported an average CPU frequency of 2677 MHz (56 samples)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,204 | INFO     | ..............................
[2025-11-22 03:06:56] 2025-11-22 08:06:21,204 | INFO     | . Timing measurements:
[2025-11-22 03:06:56] 2025-11-22 08:06:21,204 | INFO     | . get job = 0 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,204 | INFO     | . initial setup = 2 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,205 | INFO     | . payload setup = 6 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,205 | INFO     | . stage-in = 0 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,205 | INFO     | . payload execution = 97506 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,205 | INFO     | . stage-out = 6 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,205 | INFO     | . log creation = 2 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,205 | INFO     | ..............................
[2025-11-22 03:06:56] 2025-11-22 08:06:21,558 | INFO     | 
[2025-11-22 03:06:56] 2025-11-22 08:06:21,558 | INFO     | job summary report
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | --------------------------------------------------
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | PanDA job id: 6893835344
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | task id: 47523449
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | errors: (none)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | pilot state: finished 
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | transexitcode: 0
[2025-11-22 03:06:56] 2025-11-22 08:06:21,559 | INFO     | exeerrorcode: 0
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | exeerrordiag: 
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | exitcode: 0
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | exitmsg: OK
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | cpuconsumptiontime: 324238 s
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | nevents: 1000
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | neventsw: 0
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | pid: 2460622
[2025-11-22 03:06:56] 2025-11-22 08:06:21,560 | INFO     | pgrp: 2460622
[2025-11-22 03:06:56] 2025-11-22 08:06:21,561 | INFO     | corecount: 9
[2025-11-22 03:06:56] 2025-11-22 08:06:21,561 | INFO     | event service: False
[2025-11-22 03:06:56] 2025-11-22 08:06:21,561 | INFO     | sizes: {0: 2298803, 1: 2298803, 5: 2299093, 11: 2299149, 97514: 2368960, 97521: 2377954, 97524: 2378138, 97539: 2378384}
[2025-11-22 03:06:56] 2025-11-22 08:06:21,561 | INFO     | --------------------------------------------------
[2025-11-22 03:06:56] 2025-11-22 08:06:21,561 | INFO     | 
[2025-11-22 03:06:56] 2025-11-22 08:06:21,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 03:06:56] 2025-11-22 08:06:21,580 | INFO     | time since job start (97554s) is within the limit (172800.0s)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,580 | INFO     | 97557s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 03:06:56] 2025-11-22 08:06:21,607 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,608 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,608 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,608 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,608 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,608 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,608 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,608 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,609 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,610 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,610 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 03:06:56] 2025-11-22 08:06:21,610 | INFO     | job 6893835344 has completed (purged errors)
[2025-11-22 03:06:56] 2025-11-22 08:06:21,610 | INFO     | overall cleanup function is called
[2025-11-22 03:06:56] 2025-11-22 08:06:22,657 | INFO     | --- collectZombieJob: --- 10, [2460622]
[2025-11-22 03:06:56] 2025-11-22 08:06:22,657 | INFO     | zombie collector waiting for pid 2460622
[2025-11-22 03:06:56] 2025-11-22 08:06:22,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 03:06:56] 2025-11-22 08:06:22,658 | INFO     | collected zombie processes
[2025-11-22 03:06:56] 2025-11-22 08:06:22,658 | INFO     | will attempt to kill all subprocesses of pid=2460622
[2025-11-22 03:06:56] 2025-11-22 08:06:23,007 | INFO     | process IDs to be killed: [2460622] (in reverse order)
[2025-11-22 03:06:56] 2025-11-22 08:06:23,093 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 03:06:56] 2025-11-22 08:06:23,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 03:06:56] 2025-11-22 08:06:23,103 | INFO     | did not find any defunct processes belonging to 2460622
[2025-11-22 03:06:56] 2025-11-22 08:06:23,113 | INFO     | did not find any defunct processes belonging to 2460622
[2025-11-22 03:06:56] 2025-11-22 08:06:23,114 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 03:06:56] 2025-11-22 08:06:23,114 | INFO     | ready for new job
[2025-11-22 03:06:56] 2025-11-22 08:06:23,115 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 03:06:56] 2025-11-22 08:06:23,118 | INFO     | ***************************************
[2025-11-22 03:06:56] 2025-11-22 08:06:23,118 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 03:06:56] 2025-11-22 08:06:23,119 | INFO     | ***************************************
[2025-11-22 03:06:56] 2025-11-22 08:06:23,119 | INFO     | 
[2025-11-22 03:06:56] 2025-11-22 08:06:23,121 | INFO     | architecture information:
[2025-11-22 03:06:56] 2025-11-22 08:06:23,122 | INFO     | executing command: cat /etc/os-release
[2025-11-22 03:06:56] 2025-11-22 08:06:23,139 | INFO     | cat /etc/os-release:
[2025-11-22 03:06:56] NAME="CentOS Linux"
[2025-11-22 03:06:56] VERSION="7 (Core)"
[2025-11-22 03:06:56] ID="centos"
[2025-11-22 03:06:56] ID_LIKE="rhel fedora"
[2025-11-22 03:06:56] VERSION_ID="7"
[2025-11-22 03:06:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 03:06:56] ANSI_COLOR="0;31"
[2025-11-22 03:06:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 03:06:56] HOME_URL="https://www.centos.org/"
[2025-11-22 03:06:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 03:06:56] 
[2025-11-22 03:06:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 03:06:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 03:06:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 03:06:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 03:06:56] 
[2025-11-22 03:06:56] 2025-11-22 08:06:23,139 | INFO     | ***************************************
[2025-11-22 03:06:56] 2025-11-22 08:06:23,642 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 03:06:56] 2025-11-22 08:06:23,679 | INFO     | sufficient remaining disk space (56215207936 B)
[2025-11-22 03:06:56] 2025-11-22 08:06:23,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 03:06:56] 2025-11-22 08:06:23,680 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 03:06:56] 2025-11-22 08:06:23,680 | INFO     | update_server=False
[2025-11-22 03:06:56] 2025-11-22 08:06:23,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 03:06:56] 2025-11-22 08:06:23,695 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 03:06:56] 2025-11-22 08:06:23,695 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 03:06:56] 2025-11-22 08:06:23,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:06:56] 2025-11-22 08:06:23,696 | INFO     | will abort loop
[2025-11-22 03:06:56] 2025-11-22 08:06:24,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 03:06:56] 2025-11-22 08:06:24,672 | INFO     | all data control threads have been joined
[2025-11-22 03:06:56] 2025-11-22 08:06:24,681 | INFO     | all payload control threads have been joined
[2025-11-22 03:06:56] 2025-11-22 08:06:24,686 | INFO     | [job] retrieve thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:24,705 | INFO     | [job] job monitor thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:24,778 | INFO     | all job control threads have been joined
[2025-11-22 03:06:56] 2025-11-22 08:06:24,936 | INFO     | [job] validate thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:24,945 | INFO     | [data] copytool_in thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:24,970 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,060 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,082 | INFO     | [payload] validate_post thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,455 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 03:06:56] 2025-11-22 08:06:25,584 | INFO     | [payload] failed_post thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,677 | INFO     | [data] control thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,687 | INFO     | [payload] control thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,792 | INFO     | [job] control thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:25,997 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:26,047 | INFO     | [data] copytool_out thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:26,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:06:56] 2025-11-22 08:06:27,345 | INFO     | [job] queue monitor thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:29,576 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 03:06:56] 2025-11-22 08:06:33,872 | INFO     | [monitor] cgroup control has ended
[2025-11-22 03:06:56] 2025-11-22 08:06:34,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139720338102080)>', '<ExcThread(monitor, started 139719698536192)>']
[2025-11-22 03:06:56] 2025-11-22 08:06:39,904 | INFO     | all workflow threads have been joined
[2025-11-22 03:06:56] 2025-11-22 08:06:39,904 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 03:06:56] 2025-11-22 08:06:39,905 | INFO     | traces error code: 0
[2025-11-22 03:06:56] 2025-11-22 08:06:39,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 03:06:56] 2025-11-22 08:06:55,733 | INFO     | PID=2433774 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 03:06:56] 2025-11-22 08:06:55,734 | INFO     | .. there are 15 such processes running
[2025-11-22 03:06:56] 2025-11-22 08:06:55,734 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 03:06:56] 2025-11-22 08:06:55,735 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 03:06:56] 2025-11-22 08:06:55,735 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 03:06:56] 2025-11-22 08:06:55,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 03:06:56] 2025-11-22 08:06:55,735 | INFO     | [monitor] control thread has ended
[2025-11-22 03:06:56] 2025-11-22 08:06:55,911 [wrapper] ==== pilot stdout END ====
[2025-11-22 03:06:56] 2025-11-22 08:06:55,914 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 03:06:56] 2025-11-22 08:06:55,917 [wrapper] pilotpid: 2433774
[2025-11-22 03:06:56] 2025-11-22 08:06:55,920 [wrapper] Pilot exit status: 0
[2025-11-22 03:06:56] 2025-11-22 08:06:55,950 [wrapper] pandaids: 6893835344 6893835344
[2025-11-22 03:06:56] 2025-11-22 08:06:56,005 [wrapper] cleanup supervisor_pilot 1712678 2433775
[2025-11-22 03:06:56] 2025-11-22 08:06:56,008 [wrapper] Test setup, not cleaning
[2025-11-22 03:06:56] 2025-11-22 08:06:56,011 [wrapper] apfmon messages muted
[2025-11-22 03:06:56] 2025-11-22 08:06:56,014 [wrapper] ==== wrapper stdout END ====
[2025-11-22 03:06:56] 2025-11-22 08:06:56,017 [wrapper] ==== wrapper stderr END ====
[2025-11-22 03:06:56]  *** Error codes and diagnostics ***
[2025-11-22 03:06:56]     "exeErrorCode": 0,
[2025-11-22 03:06:56]     "exeErrorDiag": "",
[2025-11-22 03:06:56]     "pilotErrorCode": 0,
[2025-11-22 03:06:56]     "pilotErrorDiag": "",
[2025-11-22 03:06:56]  *** Listing of results directory ***
[2025-11-22 03:06:56] total 1725736
[2025-11-22 03:06:56] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-22 03:06:56] -rwx------. 1 boincer umatlas     36292 Nov 20 05:11 runpilot2-wrapper.sh
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 05:12 queuedata.json
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas       100 Nov 20 05:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 03:06:56] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 05:18 run_atlas
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas       105 Nov 20 05:18 job.xml
[2025-11-22 03:06:56] -rw-r--r--. 3 boincer umatlas 407671387 Nov 20 05:18 EVNT.47493127._000084.pool.root.1
[2025-11-22 03:06:56] -rw-r--r--. 3 boincer umatlas 407671387 Nov 20 05:18 ATLAS.root_0
[2025-11-22 03:06:56] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 05:18 input.tar.gz
[2025-11-22 03:06:56] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 05:18 start_atlas.sh
[2025-11-22 03:06:56] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 05:18 shared
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas         0 Nov 20 05:18 boinc_lockfile
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas      2784 Nov 21 00:00 pandaJob.out
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas        57 Nov 21 00:00 setup.sh.local
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas    989817 Nov 21 00:00 agis_schedconf.cvmfs.json
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas       534 Nov 22 00:52 boinc_task_state.xml
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas      6615 Nov 22 03:04 init_data.xml
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas 918849449 Nov 22 03:05 HITS.47523449._000838.pool.root.1
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas      1074 Nov 22 03:05 memory_monitor_summary.json
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas        95 Nov 22 03:05 pilot_heartbeat.json
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas   1526164 Nov 22 03:05 agis_ddmendpoints.agis.ALL.json
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas   2652675 Nov 22 03:06 log.47523449._000838.job.log.tgz.1
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas      8652 Nov 22 03:06 heartbeat.json
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 03:06 boinc_mmap_file
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas        30 Nov 22 03:06 wrapper_checkpoint.txt
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas       823 Nov 22 03:06 pilotlog.txt
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas  11863156 Nov 22 03:06 log.47523449._000838.job.log.1
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas       353 Nov 22 03:06 output.list
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas       620 Nov 22 03:06 runtime_log
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas  14540800 Nov 22 03:06 result.tar.gz
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas      9423 Nov 22 03:06 runtime_log.err
[2025-11-22 03:06:56] -rw-------. 1 boincer umatlas       791 Nov 22 03:06 FsMODmmoGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1EGKDmT6bnzm.diag
[2025-11-22 03:06:56] -rw-r--r--. 1 boincer umatlas     23926 Nov 22 03:06 stderr.txt
[2025-11-22 03:06:57] HITS file was successfully produced:
[2025-11-22 03:06:57] -rw-------. 1 boincer umatlas 918849449 Nov 22 03:05 shared/HITS.pool.root.1
[2025-11-22 03:06:57]  *** Contents of shared directory: ***
[2025-11-22 03:06:57] total 1310236
[2025-11-22 03:06:57] -rw-r--r--. 3 boincer umatlas 407671387 Nov 20 05:18 ATLAS.root_0
[2025-11-22 03:06:57] -rw-r--r--. 2 boincer umatlas    590097 Nov 20 05:18 input.tar.gz
[2025-11-22 03:06:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 20 05:18 start_atlas.sh
[2025-11-22 03:06:57] -rw-------. 1 boincer umatlas 918849449 Nov 22 03:05 HITS.pool.root.1
[2025-11-22 03:06:57] -rw-------. 1 boincer umatlas  14540800 Nov 22 03:06 result.tar.gz
03:06:58 (2420731): run_atlas exited; CPU time 326860.433855
03:06:58 (2420731): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN