Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:14:03 (19052): wrapper (7.7.26015): starting
05:14:03 (19052): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:14:03] Arguments: --nthreads 8
[2025-11-20 05:14:03] Threads: 8
[2025-11-20 05:14:03] Checking for CVMFS
[2025-11-20 05:14:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:14:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:14:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:14:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:14:03] 2.11.2.0 2830 40090 89940 153076 0 1 16721865 20275200 1 130560 0 6094948 99.615 2697616 28751 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:14:03] CVMFS is ok
[2025-11-20 05:14:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:14:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:14:03] Further information can be found at the LHC@home message board.
[2025-11-20 05:14:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:14:03] Checking for apptainer binary...
[2025-11-20 05:14:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:14:03] Running /usr/bin/apptainer --version
[2025-11-20 05:14:03] apptainer version 1.3.2-1.el7
[2025-11-20 05:14:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:14:05] c-204-5.aglt2.org
[2025-11-20 05:14:05] apptainer works
[2025-11-20 05:14:05] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:14:05] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:14:05] Starting ATLAS job with PandaID=6893833358
[2025-11-20 05:14:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:44:44]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:44:44] 2025-11-20 22:44:06,167 | INFO     | monitor loop #3304: job 0:6893833358 is in state 'finished'
[2025-11-20 17:44:44] 2025-11-20 22:44:06,168 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,590 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 17:44:44] 2025-11-20 22:44:06,594 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2025-11-20 17:44:44] 2025-11-20 22:44:06,597 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893833358/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,599 | INFO     | extracted standard info from prmon json
[2025-11-20 17:44:44] 2025-11-20 22:44:06,599 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:44:44] 2025-11-20 22:44:06,599 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:44:44] 2025-11-20 22:44:06,612 | INFO     | fitting pss+swap vs Time
[2025-11-20 17:44:44] 2025-11-20 22:44:06,612 | INFO     | sum of square deviations: 124130016710.46133
[2025-11-20 17:44:44] 2025-11-20 22:44:06,624 | INFO     | sum of deviations: 727547165174.0262
[2025-11-20 17:44:44] 2025-11-20 22:44:06,624 | INFO     | mean x: 1763656143.6553595
[2025-11-20 17:44:44] 2025-11-20 22:44:06,624 | INFO     | mean y: 2992301.5630936227
[2025-11-20 17:44:44] 2025-11-20 22:44:06,624 | INFO     | intersect: -10334096677.09385
[2025-11-20 17:44:44] 2025-11-20 22:44:06,625 | INFO     | chi2: 5.285022809776696
[2025-11-20 17:44:44] 2025-11-20 22:44:06,626 | INFO     | sum of square deviations: 121620851858.29927
[2025-11-20 17:44:44] 2025-11-20 22:44:06,643 | INFO     | sum of deviations: 957932332129.426
[2025-11-20 17:44:44] 2025-11-20 22:44:06,643 | INFO     | mean x: 1763655991.159836
[2025-11-20 17:44:44] 2025-11-20 22:44:06,643 | INFO     | mean y: 3006297.8852459015
[2025-11-20 17:44:44] 2025-11-20 22:44:06,643 | INFO     | intersect: -13888222639.190226
[2025-11-20 17:44:44] 2025-11-20 22:44:06,644 | INFO     | chi2: 2.6946080962834786
[2025-11-20 17:44:44] 2025-11-20 22:44:06,644 | INFO     | current chi2=2.6946080962834786 (change=49.01425796500334 %)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,645 | INFO     | sum of square deviations: 119145734156.10747
[2025-11-20 17:44:44] 2025-11-20 22:44:06,665 | INFO     | sum of deviations: 1043457197354.9829
[2025-11-20 17:44:44] 2025-11-20 22:44:06,666 | INFO     | mean x: 1763655838.664374
[2025-11-20 17:44:44] 2025-11-20 22:44:06,666 | INFO     | mean y: 3011555.3892709767
[2025-11-20 17:44:44] 2025-11-20 22:44:06,666 | INFO     | intersect: -15442773319.294342
[2025-11-20 17:44:44] 2025-11-20 22:44:06,667 | INFO     | chi2: 2.1541857996597935
[2025-11-20 17:44:44] 2025-11-20 22:44:06,667 | INFO     | current chi2=2.1541857996597935 (change=20.055691859942794 %)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,667 | INFO     | right removable region: 726
[2025-11-20 17:44:44] 2025-11-20 22:44:06,668 | INFO     | sum of square deviations: 121620557228.2993
[2025-11-20 17:44:44] 2025-11-20 22:44:06,689 | INFO     | sum of deviations: 528625493904.0575
[2025-11-20 17:44:44] 2025-11-20 22:44:06,689 | INFO     | mean x: 1763656296.159836
[2025-11-20 17:44:44] 2025-11-20 22:44:06,689 | INFO     | mean y: 3004370.144808743
[2025-11-20 17:44:44] 2025-11-20 22:44:06,689 | INFO     | intersect: -7662752981.093164
[2025-11-20 17:44:44] 2025-11-20 22:44:06,690 | INFO     | chi2: 3.259917433837671
[2025-11-20 17:44:44] 2025-11-20 22:44:06,690 | INFO     | current chi2=3.259917433837671 (change=38.31781713775783 %)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,691 | INFO     | sum of square deviations: 119145278853.08102
[2025-11-20 17:44:44] 2025-11-20 22:44:06,711 | INFO     | sum of deviations: 485884071645.69763
[2025-11-20 17:44:44] 2025-11-20 22:44:06,711 | INFO     | mean x: 1763656448.6602476
[2025-11-20 17:44:44] 2025-11-20 22:44:06,711 | INFO     | mean y: 3007001.7922971114
[2025-11-20 17:44:44] 2025-11-20 22:44:06,712 | INFO     | intersect: -7189326462.934598
[2025-11-20 17:44:44] 2025-11-20 22:44:06,712 | INFO     | chi2: 3.216306718321564
[2025-11-20 17:44:44] 2025-11-20 22:44:06,712 | INFO     | current chi2=3.216306718321564 (change=1.3377858918582222 %)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,713 | INFO     | left removable region: 20
[2025-11-20 17:44:44] 2025-11-20 22:44:06,713 | INFO     | sum of square deviations: 109115959056.91771
[2025-11-20 17:44:44] 2025-11-20 22:44:06,724 | INFO     | sum of deviations: 753095871822.6969
[2025-11-20 17:44:44] 2025-11-20 22:44:06,724 | INFO     | mean x: 1763656418.1728046
[2025-11-20 17:44:44] 2025-11-20 22:44:06,724 | INFO     | mean y: 3030030.7237960338
[2025-11-20 17:44:44] 2025-11-20 22:44:06,724 | INFO     | intersect: -12169363259.122269
[2025-11-20 17:44:44] 2025-11-20 22:44:06,725 | INFO     | chi2: 0.055591483127076353
[2025-11-20 17:44:44] 2025-11-20 22:44:06,725 | INFO     | current memory leak: 6.90 B/s (using 706 data points, chi2=0.06)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,725 | INFO     | could have reported an average CPU frequency of 2165 MHz (28 samples)
[2025-11-20 17:44:44] 2025-11-20 22:44:06,726 | INFO     | ..............................
[2025-11-20 17:44:44] 2025-11-20 22:44:06,726 | INFO     | . Timing measurements:
[2025-11-20 17:44:44] 2025-11-20 22:44:06,726 | INFO     | . get job = 0 s
[2025-11-20 17:44:44] 2025-11-20 22:44:06,726 | INFO     | . initial setup = 3 s
[2025-11-20 17:44:44] 2025-11-20 22:44:06,726 | INFO     | . payload setup = 9 s
[2025-11-20 17:44:44] 2025-11-20 22:44:06,726 | INFO     | . stage-in = 0 s
[2025-11-20 17:44:44] 2025-11-20 22:44:06,726 | INFO     | . payload execution = 44942 s
[2025-11-20 17:44:44] 2025-11-20 22:44:06,727 | INFO     | . stage-out = 3 s
[2025-11-20 17:44:44] 2025-11-20 22:44:06,727 | INFO     | . log creation = 0 s
[2025-11-20 17:44:44] 2025-11-20 22:44:06,727 | INFO     | ..............................
[2025-11-20 17:44:44] 2025-11-20 22:44:07,139 | INFO     | 
[2025-11-20 17:44:44] 2025-11-20 22:44:07,140 | INFO     | job summary report
[2025-11-20 17:44:44] 2025-11-20 22:44:07,140 | INFO     | --------------------------------------------------
[2025-11-20 17:44:44] 2025-11-20 22:44:07,140 | INFO     | PanDA job id: 6893833358
[2025-11-20 17:44:44] 2025-11-20 22:44:07,140 | INFO     | task id: 47523449
[2025-11-20 17:44:44] 2025-11-20 22:44:07,140 | INFO     | errors: (none)
[2025-11-20 17:44:44] 2025-11-20 22:44:07,141 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:44:44] 2025-11-20 22:44:07,141 | INFO     | pilot state: finished 
[2025-11-20 17:44:44] 2025-11-20 22:44:07,141 | INFO     | transexitcode: 0
[2025-11-20 17:44:44] 2025-11-20 22:44:07,141 | INFO     | exeerrorcode: 0
[2025-11-20 17:44:44] 2025-11-20 22:44:07,141 | INFO     | exeerrordiag: 
[2025-11-20 17:44:44] 2025-11-20 22:44:07,142 | INFO     | exitcode: 0
[2025-11-20 17:44:44] 2025-11-20 22:44:07,142 | INFO     | exitmsg: OK
[2025-11-20 17:44:44] 2025-11-20 22:44:07,142 | INFO     | cpuconsumptiontime: 348685 s
[2025-11-20 17:44:44] 2025-11-20 22:44:07,142 | INFO     | nevents: 1000
[2025-11-20 17:44:44] 2025-11-20 22:44:07,142 | INFO     | neventsw: 0
[2025-11-20 17:44:44] 2025-11-20 22:44:07,142 | INFO     | pid: 30219
[2025-11-20 17:44:44] 2025-11-20 22:44:07,143 | INFO     | pgrp: 30219
[2025-11-20 17:44:44] 2025-11-20 22:44:07,143 | INFO     | corecount: 8
[2025-11-20 17:44:44] 2025-11-20 22:44:07,143 | INFO     | event service: False
[2025-11-20 17:44:44] 2025-11-20 22:44:07,143 | INFO     | sizes: {0: 2297036, 1: 2297235, 6: 2297497, 11: 2297525, 44954: 2343448, 44958: 2354038, 44959: 2354222, 44966: 2354468}
[2025-11-20 17:44:44] 2025-11-20 22:44:07,143 | INFO     | --------------------------------------------------
[2025-11-20 17:44:44] 2025-11-20 22:44:07,143 | INFO     | 
[2025-11-20 17:44:44] 2025-11-20 22:44:07,144 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 17:44:44] 2025-11-20 22:44:07,155 | INFO     | time since job start (44984s) is within the limit (172800.0s)
[2025-11-20 17:44:44] 2025-11-20 22:44:07,174 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,175 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,175 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,175 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,175 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,175 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,176 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,176 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,176 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,176 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,176 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,177 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,177 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,177 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,177 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,178 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,178 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:44:44] 2025-11-20 22:44:07,178 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,178 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:44:44] 2025-11-20 22:44:07,179 | INFO     | job 6893833358 has completed (purged errors)
[2025-11-20 17:44:44] 2025-11-20 22:44:07,179 | INFO     | overall cleanup function is called
[2025-11-20 17:44:44] 2025-11-20 22:44:08,195 | INFO     | --- collectZombieJob: --- 10, [30219]
[2025-11-20 17:44:44] 2025-11-20 22:44:08,196 | INFO     | zombie collector waiting for pid 30219
[2025-11-20 17:44:44] 2025-11-20 22:44:08,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:44:44] 2025-11-20 22:44:08,196 | INFO     | collected zombie processes
[2025-11-20 17:44:44] 2025-11-20 22:44:08,196 | INFO     | will attempt to kill all subprocesses of pid=30219
[2025-11-20 17:44:44] 2025-11-20 22:44:08,288 | INFO     | process IDs to be killed: [30219] (in reverse order)
[2025-11-20 17:44:44] 2025-11-20 22:44:08,345 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:44:44] 2025-11-20 22:44:08,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:44:44] 2025-11-20 22:44:08,351 | INFO     | did not find any defunct processes belonging to 30219
[2025-11-20 17:44:44] 2025-11-20 22:44:08,354 | INFO     | did not find any defunct processes belonging to 30219
[2025-11-20 17:44:44] 2025-11-20 22:44:08,357 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:44:44] 2025-11-20 22:44:08,358 | INFO     | ready for new job
[2025-11-20 17:44:44] 2025-11-20 22:44:08,358 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:44:44] 2025-11-20 22:44:08,362 | INFO     | ***************************************
[2025-11-20 17:44:44] 2025-11-20 22:44:08,363 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:44:44] 2025-11-20 22:44:08,363 | INFO     | ***************************************
[2025-11-20 17:44:44] 2025-11-20 22:44:08,363 | INFO     | 
[2025-11-20 17:44:44] 2025-11-20 22:44:08,364 | INFO     | architecture information:
[2025-11-20 17:44:44] 2025-11-20 22:44:08,364 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:44:44] 2025-11-20 22:44:08,383 | INFO     | cat /etc/os-release:
[2025-11-20 17:44:44] NAME="CentOS Linux"
[2025-11-20 17:44:44] VERSION="7 (Core)"
[2025-11-20 17:44:44] ID="centos"
[2025-11-20 17:44:44] ID_LIKE="rhel fedora"
[2025-11-20 17:44:44] VERSION_ID="7"
[2025-11-20 17:44:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:44:44] ANSI_COLOR="0;31"
[2025-11-20 17:44:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:44:44] HOME_URL="https://www.centos.org/"
[2025-11-20 17:44:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:44:44] 
[2025-11-20 17:44:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:44:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:44:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:44:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:44:44] 
[2025-11-20 17:44:44] 2025-11-20 22:44:08,383 | INFO     | ***************************************
[2025-11-20 17:44:44] 2025-11-20 22:44:08,886 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 17:44:44] 2025-11-20 22:44:08,906 | INFO     | sufficient remaining disk space (17452498944 B)
[2025-11-20 17:44:44] 2025-11-20 22:44:08,907 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:44:44] 2025-11-20 22:44:08,907 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:44:44] 2025-11-20 22:44:08,908 | INFO     | update_server=False
[2025-11-20 17:44:44] 2025-11-20 22:44:08,908 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:44:44] 2025-11-20 22:44:08,908 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-20 17:44:44] 2025-11-20 22:44:08,909 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:44:44] 2025-11-20 22:44:08,909 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:44:44] 2025-11-20 22:44:08,909 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:44:44] 2025-11-20 22:44:09,168 | INFO     | all data control threads have been joined
[2025-11-20 17:44:44] 2025-11-20 22:44:09,407 | INFO     | all payload control threads have been joined
[2025-11-20 17:44:44] 2025-11-20 22:44:09,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:44:44] 2025-11-20 22:44:09,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:44:44] 2025-11-20 22:44:09,676 | INFO     | aborting loop
[2025-11-20 17:44:44] 2025-11-20 22:44:09,913 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,073 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,101 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,174 | INFO     | [data] control thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,284 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,316 | INFO     | all job control threads have been joined
[2025-11-20 17:44:44] 2025-11-20 22:44:10,364 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,413 | INFO     | [payload] control thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,508 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:44:44] 2025-11-20 22:44:10,551 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,680 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:10,930 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:11,038 | INFO     | [job] validate thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:11,049 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:11,321 | INFO     | [job] control thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:11,477 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:11,826 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:44:44] 2025-11-20 22:44:12,832 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:14,514 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:44:44] 2025-11-20 22:44:27,803 [wrapper] supervise_pilot (15 min periods counter: 51)
[2025-11-20 17:44:44] 2025-11-20 22:44:37,777 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:44:44] 2025-11-20 22:44:39,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558345398080)>', '<ExcThread(monitor, started 140557603026688)>']
[2025-11-20 17:44:44] 2025-11-20 22:44:40,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:44:44] 2025-11-20 22:44:40,061 | INFO     | [monitor] control thread has ended
[2025-11-20 17:44:44] 2025-11-20 22:44:44,217 | INFO     | all workflow threads have been joined
[2025-11-20 17:44:44] 2025-11-20 22:44:44,218 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:44:44] 2025-11-20 22:44:44,218 | INFO     | traces error code: 0
[2025-11-20 17:44:44] 2025-11-20 22:44:44,218 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:44:44] 2025-11-20 22:44:44,329 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:44:44] 2025-11-20 22:44:44,333 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:44:44] 2025-11-20 22:44:44,338 [wrapper] pilotpid: 22752
[2025-11-20 17:44:44] 2025-11-20 22:44:44,342 [wrapper] Pilot exit status: 0
[2025-11-20 17:44:44] 2025-11-20 22:44:44,358 [wrapper] pandaids: 6893833358
[2025-11-20 17:44:44] 2025-11-20 22:44:44,399 [wrapper] cleanup supervisor_pilot 25517 22753
[2025-11-20 17:44:44] 2025-11-20 22:44:44,404 [wrapper] Test setup, not cleaning
[2025-11-20 17:44:44] 2025-11-20 22:44:44,409 [wrapper] apfmon messages muted
[2025-11-20 17:44:44] 2025-11-20 22:44:44,414 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:44:44] 2025-11-20 22:44:44,419 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:44:44]  *** Error codes and diagnostics ***
[2025-11-20 17:44:44]     "exeErrorCode": 0,
[2025-11-20 17:44:44]     "exeErrorDiag": "",
[2025-11-20 17:44:44]     "pilotErrorCode": 0,
[2025-11-20 17:44:44]     "pilotErrorDiag": "",
[2025-11-20 17:44:44]  *** Listing of results directory ***
[2025-11-20 17:44:44] total 1331108
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:11 queuedata.json
[2025-11-20 17:44:44] -rwx------ 1 boincer umatlas     36292 Nov 20 05:11 runpilot2-wrapper.sh
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:44:44] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:14 run_atlas
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:14 job.xml
[2025-11-20 17:44:44] -rw-r--r-- 2 boincer umatlas 411325505 Nov 20 05:14 EVNT.47493127._000035.pool.root.1
[2025-11-20 17:44:44] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:14 start_atlas.sh
[2025-11-20 17:44:44] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:14 shared
[2025-11-20 17:44:44] -rw-r--r-- 2 boincer umatlas    590099 Nov 20 05:14 input.tar.gz
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:14 boinc_lockfile
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas      2784 Nov 20 05:14 pandaJob.out
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas        57 Nov 20 05:14 setup.sh.local
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas    989443 Nov 20 05:14 agis_schedconf.cvmfs.json
[2025-11-20 17:44:44] drwx------ 5 boincer umatlas      4096 Nov 20 05:14 pilot3
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas       533 Nov 20 17:33 boinc_task_state.xml
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas      5910 Nov 20 17:36 init_data.xml
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas 931474870 Nov 20 17:43 HITS.47523449._000343.pool.root.1
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas        95 Nov 20 17:43 pilot_heartbeat.json
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas      1072 Nov 20 17:43 memory_monitor_summary.json
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas   1526164 Nov 20 17:43 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas   1977493 Nov 20 17:43 log.47523449._000343.job.log.tgz.1
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas      8669 Nov 20 17:44 heartbeat.json
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas        29 Nov 20 17:44 wrapper_checkpoint.txt
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 17:44 boinc_mmap_file
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas      4552 Nov 20 17:44 pilotlog.txt
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas   6187212 Nov 20 17:44 log.47523449._000343.job.log.1
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas       353 Nov 20 17:44 output.list
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas       620 Nov 20 17:44 runtime_log
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas   8181760 Nov 20 17:44 result.tar.gz
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas      9338 Nov 20 17:44 runtime_log.err
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas       667 Nov 20 17:44 JwRMDmeoGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9DGKDmScNzmn.diag
[2025-11-20 17:44:44] -rw-r--r-- 1 boincer umatlas     21216 Nov 20 17:44 stderr.txt
[2025-11-20 17:44:44] HITS file was successfully produced:
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas 931474870 Nov 20 17:43 shared/HITS.pool.root.1
[2025-11-20 17:44:44]  *** Contents of shared directory: ***
[2025-11-20 17:44:44] total 1319928
[2025-11-20 17:44:44] -rw-r--r-- 2 boincer umatlas 411325505 Nov 20 05:14 ATLAS.root_0
[2025-11-20 17:44:44] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:14 start_atlas.sh
[2025-11-20 17:44:44] -rw-r--r-- 2 boincer umatlas    590099 Nov 20 05:14 input.tar.gz
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas 931474870 Nov 20 17:43 HITS.pool.root.1
[2025-11-20 17:44:44] -rw------- 1 boincer umatlas   8181760 Nov 20 17:44 result.tar.gz
17:44:45 (19052): run_atlas exited; CPU time 345994.921781
17:44:45 (19052): called boinc_finish(0)

</stderr_txt>
]]>

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