Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:12:07 (22947): wrapper (7.7.26015): starting
05:12:07 (22947): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:12:07] Arguments: --nthreads 8
[2025-11-20 05:12:07] Threads: 8
[2025-11-20 05:12:07] Checking for CVMFS
[2025-11-20 05:12:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:12:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:12:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:12:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:12:08] 2.11.2.0 2934 168048 80316 153076 2 1 18297124 20275200 1 130560 1 63543383 99.957 7269134 22743 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:12:08] CVMFS is ok
[2025-11-20 05:12:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:12:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:12:08] Further information can be found at the LHC@home message board.
[2025-11-20 05:12:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:12:08] Checking for apptainer binary...
[2025-11-20 05:12:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:12:08] Running /usr/bin/apptainer --version
[2025-11-20 05:12:08] apptainer version 1.3.2-1.el7
[2025-11-20 05:12:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:12:10] c-204-33.aglt2.org
[2025-11-20 05:12:10] apptainer works
[2025-11-20 05:12:10] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:12:10] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:12:10] Starting ATLAS job with PandaID=6893829614
[2025-11-20 05:12:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:31:21 (15886): wrapper (7.7.26015): starting
11:31:21 (15886): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 11:31:21] Arguments: --nthreads 8
[2025-11-20 11:31:21] Threads: 8
[2025-11-20 11:31:21] This job has been restarted, cleaning up previous attempt
[2025-11-20 11:31:21] Checking for CVMFS
[2025-11-20 11:31:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 11:31:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 11:31:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 11:31:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 11:31:22] 2.11.2.0 2934 168427 80608 153088 0 56 18788890 20275200 1 130560 1 63695219 99.957 7286324 22762 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 11:31:22] CVMFS is ok
[2025-11-20 11:31:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 11:31:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 11:31:22] Further information can be found at the LHC@home message board.
[2025-11-20 11:31:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 11:31:22] Checking for apptainer binary...
[2025-11-20 11:31:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 11:31:22] Running /usr/bin/apptainer --version
[2025-11-20 11:31:22] apptainer version 1.3.2-1.el7
[2025-11-20 11:31:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 11:31:24] c-204-33.aglt2.org
[2025-11-20 11:31:24] apptainer works
[2025-11-20 11:31:24] Set ATHENA_PROC_NUMBER=8
[2025-11-20 11:31:24] Set ATHENA_CORE_NUMBER=8
[2025-11-20 11:31:24] Starting ATLAS job with PandaID=6893829614
[2025-11-20 11:31:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 00:07:22]  *** The last 200 lines of the pilot log: ***
[2025-11-21 00:07:22] 2025-11-21 05:06:46,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,423 | INFO     | time since job start (45307s) is within the limit (172800.0s)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,423 | INFO     | 45309s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 00:07:22] 2025-11-21 05:06:48,815 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 00:07:22] 2025-11-21 05:06:48,819 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-21 00:07:22] 2025-11-21 05:06:48,821 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893829614/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,823 | INFO     | extracted standard info from prmon json
[2025-11-21 00:07:22] 2025-11-21 05:06:48,823 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 00:07:22] 2025-11-21 05:06:48,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 00:07:22] 2025-11-21 05:06:48,837 | INFO     | fitting pss+swap vs Time
[2025-11-21 00:07:22] 2025-11-21 05:06:48,838 | INFO     | sum of square deviations: 126674332493.95175
[2025-11-21 00:07:22] 2025-11-21 05:06:48,849 | INFO     | sum of deviations: 811421768963.5758
[2025-11-21 00:07:22] 2025-11-21 05:06:48,850 | INFO     | mean x: 1763678934.0080862
[2025-11-21 00:07:22] 2025-11-21 05:06:48,850 | INFO     | mean y: 2874793.2371967654
[2025-11-21 00:07:22] 2025-11-21 05:06:48,850 | INFO     | intersect: -11294500549.829754
[2025-11-21 00:07:22] 2025-11-21 05:06:48,851 | INFO     | chi2: 5.762727377694107
[2025-11-21 00:07:22] 2025-11-21 05:06:48,852 | INFO     | sum of square deviations: 124130855600.15176
[2025-11-21 00:07:22] 2025-11-21 05:06:48,863 | INFO     | sum of deviations: 1047284520413.7251
[2025-11-21 00:07:22] 2025-11-21 05:06:48,863 | INFO     | mean x: 1763678781.5115333
[2025-11-21 00:07:22] 2025-11-21 05:06:48,863 | INFO     | mean y: 2888930.3853459973
[2025-11-21 00:07:22] 2025-11-21 05:06:48,863 | INFO     | intersect: -14877162269.849117
[2025-11-21 00:07:22] 2025-11-21 05:06:48,864 | INFO     | chi2: 2.813381421601041
[2025-11-21 00:07:22] 2025-11-21 05:06:48,864 | INFO     | current chi2=2.813381421601041 (change=51.179689108826366 %)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,865 | INFO     | sum of square deviations: 121621658418.8347
[2025-11-21 00:07:22] 2025-11-21 05:06:48,876 | INFO     | sum of deviations: 1104959413937.366
[2025-11-21 00:07:22] 2025-11-21 05:06:48,876 | INFO     | mean x: 1763678629.0150273
[2025-11-21 00:07:22] 2025-11-21 05:06:48,876 | INFO     | mean y: 2892431.693989071
[2025-11-21 00:07:22] 2025-11-21 05:06:48,877 | INFO     | intersect: -16020514333.399963
[2025-11-21 00:07:22] 2025-11-21 05:06:48,877 | INFO     | chi2: 2.532468932480449
[2025-11-21 00:07:22] 2025-11-21 05:06:48,877 | INFO     | current chi2=2.532468932480449 (change=9.984870411233825 %)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,878 | INFO     | right removable region: 731
[2025-11-21 00:07:22] 2025-11-21 05:06:48,878 | INFO     | sum of square deviations: 124130625630.1517
[2025-11-21 00:07:22] 2025-11-21 05:06:48,889 | INFO     | sum of deviations: 604395646108.6917
[2025-11-21 00:07:22] 2025-11-21 05:06:48,890 | INFO     | mean x: 1763679086.5115333
[2025-11-21 00:07:22] 2025-11-21 05:06:48,890 | INFO     | mean y: 2887183.918588874
[2025-11-21 00:07:22] 2025-11-21 05:06:48,890 | INFO     | intersect: -8584517863.056381
[2025-11-21 00:07:22] 2025-11-21 05:06:48,891 | INFO     | chi2: 3.396684872783331
[2025-11-21 00:07:22] 2025-11-21 05:06:48,891 | INFO     | current chi2=3.396684872783331 (change=41.057685880978156 %)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,892 | INFO     | sum of square deviations: 121621288148.88942
[2025-11-21 00:07:22] 2025-11-21 05:06:48,903 | INFO     | sum of deviations: 560885905911.1566
[2025-11-21 00:07:22] 2025-11-21 05:06:48,903 | INFO     | mean x: 1763679239.012295
[2025-11-21 00:07:22] 2025-11-21 05:06:48,903 | INFO     | mean y: 2889826.8715846995
[2025-11-21 00:07:22] 2025-11-21 05:06:48,903 | INFO     | intersect: -8130742391.355694
[2025-11-21 00:07:22] 2025-11-21 05:06:48,904 | INFO     | chi2: 3.3525239126266775
[2025-11-21 00:07:22] 2025-11-21 05:06:48,904 | INFO     | current chi2=3.3525239126266775 (change=1.3001194344080222 %)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,904 | INFO     | left removable region: 20
[2025-11-21 00:07:22] 2025-11-21 05:06:48,905 | INFO     | sum of square deviations: 111451505759.45416
[2025-11-21 00:07:22] 2025-11-21 05:06:48,915 | INFO     | sum of deviations: 804675915677.3827
[2025-11-21 00:07:22] 2025-11-21 05:06:48,915 | INFO     | mean x: 1763679208.5203938
[2025-11-21 00:07:22] 2025-11-21 05:06:48,915 | INFO     | mean y: 2911234.4908579467
[2025-11-21 00:07:22] 2025-11-21 05:06:48,916 | INFO     | intersect: -12730790050.266552
[2025-11-21 00:07:22] 2025-11-21 05:06:48,916 | INFO     | chi2: 0.08347513388723155
[2025-11-21 00:07:22] 2025-11-21 05:06:48,917 | INFO     | current memory leak: 7.22 B/s (using 711 data points, chi2=0.08)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,917 | INFO     | could have reported an average CPU frequency of 2165 MHz (28 samples)
[2025-11-21 00:07:22] 2025-11-21 05:06:48,917 | INFO     | ..............................
[2025-11-21 00:07:22] 2025-11-21 05:06:48,917 | INFO     | . Timing measurements:
[2025-11-21 00:07:22] 2025-11-21 05:06:48,917 | INFO     | . get job = 0 s
[2025-11-21 00:07:22] 2025-11-21 05:06:48,918 | INFO     | . initial setup = 2 s
[2025-11-21 00:07:22] 2025-11-21 05:06:48,918 | INFO     | . payload setup = 8 s
[2025-11-21 00:07:22] 2025-11-21 05:06:48,918 | INFO     | . stage-in = 0 s
[2025-11-21 00:07:22] 2025-11-21 05:06:48,918 | INFO     | . payload execution = 45264 s
[2025-11-21 00:07:22] 2025-11-21 05:06:48,918 | INFO     | . stage-out = 3 s
[2025-11-21 00:07:22] 2025-11-21 05:06:48,918 | INFO     | . log creation = 0 s
[2025-11-21 00:07:22] 2025-11-21 05:06:48,918 | INFO     | ..............................
[2025-11-21 00:07:22] 2025-11-21 05:06:49,081 | INFO     | 
[2025-11-21 00:07:22] 2025-11-21 05:06:49,081 | INFO     | job summary report
[2025-11-21 00:07:22] 2025-11-21 05:06:49,081 | INFO     | --------------------------------------------------
[2025-11-21 00:07:22] 2025-11-21 05:06:49,082 | INFO     | PanDA job id: 6893829614
[2025-11-21 00:07:22] 2025-11-21 05:06:49,082 | INFO     | task id: 47523449
[2025-11-21 00:07:22] 2025-11-21 05:06:49,082 | INFO     | errors: (none)
[2025-11-21 00:07:22] 2025-11-21 05:06:49,082 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 00:07:22] 2025-11-21 05:06:49,082 | INFO     | pilot state: finished 
[2025-11-21 00:07:22] 2025-11-21 05:06:49,083 | INFO     | transexitcode: 0
[2025-11-21 00:07:22] 2025-11-21 05:06:49,083 | INFO     | exeerrorcode: 0
[2025-11-21 00:07:22] 2025-11-21 05:06:49,083 | INFO     | exeerrordiag: 
[2025-11-21 00:07:22] 2025-11-21 05:06:49,083 | INFO     | exitcode: 0
[2025-11-21 00:07:22] 2025-11-21 05:06:49,083 | INFO     | exitmsg: OK
[2025-11-21 00:07:22] 2025-11-21 05:06:49,084 | INFO     | cpuconsumptiontime: 350574 s
[2025-11-21 00:07:22] 2025-11-21 05:06:49,084 | INFO     | nevents: 1000
[2025-11-21 00:07:22] 2025-11-21 05:06:49,084 | INFO     | neventsw: 0
[2025-11-21 00:07:22] 2025-11-21 05:06:49,084 | INFO     | pid: 26072
[2025-11-21 00:07:22] 2025-11-21 05:06:49,084 | INFO     | pgrp: 26072
[2025-11-21 00:07:22] 2025-11-21 05:06:49,084 | INFO     | corecount: 8
[2025-11-21 00:07:22] 2025-11-21 05:06:49,085 | INFO     | event service: False
[2025-11-21 00:07:22] 2025-11-21 05:06:49,085 | INFO     | sizes: {0: 2298803, 6: 2299065, 11: 2299093, 45277: 2345129, 45282: 2354123, 45283: 2354179, 45291: 2354553}
[2025-11-21 00:07:22] 2025-11-21 05:06:49,085 | INFO     | --------------------------------------------------
[2025-11-21 00:07:22] 2025-11-21 05:06:49,085 | INFO     | 
[2025-11-21 00:07:22] 2025-11-21 05:06:49,085 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 00:07:22] 2025-11-21 05:06:49,109 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,110 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,110 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,110 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,111 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,111 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,111 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,111 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,112 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,112 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,112 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,113 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,113 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,113 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 00:07:22] 2025-11-21 05:06:49,114 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,114 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 00:07:22] 2025-11-21 05:06:49,114 | INFO     | job 6893829614 has completed (purged errors)
[2025-11-21 00:07:22] 2025-11-21 05:06:49,115 | INFO     | overall cleanup function is called
[2025-11-21 00:07:22] 2025-11-21 05:06:50,132 | INFO     | --- collectZombieJob: --- 10, [26072]
[2025-11-21 00:07:22] 2025-11-21 05:06:50,133 | INFO     | zombie collector waiting for pid 26072
[2025-11-21 00:07:22] 2025-11-21 05:06:50,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 00:07:22] 2025-11-21 05:06:50,134 | INFO     | collected zombie processes
[2025-11-21 00:07:22] 2025-11-21 05:06:50,134 | INFO     | will attempt to kill all subprocesses of pid=26072
[2025-11-21 00:07:22] 2025-11-21 05:06:50,237 | INFO     | process IDs to be killed: [26072] (in reverse order)
[2025-11-21 00:07:22] 2025-11-21 05:06:50,292 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 00:07:22] 2025-11-21 05:06:50,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 00:07:22] 2025-11-21 05:06:50,297 | INFO     | did not find any defunct processes belonging to 26072
[2025-11-21 00:07:22] 2025-11-21 05:06:50,299 | INFO     | did not find any defunct processes belonging to 26072
[2025-11-21 00:07:22] 2025-11-21 05:06:50,302 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 00:07:22] 2025-11-21 05:06:50,302 | INFO     | ready for new job
[2025-11-21 00:07:22] 2025-11-21 05:06:50,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 00:07:22] 2025-11-21 05:06:50,306 | INFO     | ***************************************
[2025-11-21 00:07:22] 2025-11-21 05:06:50,306 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 00:07:22] 2025-11-21 05:06:50,306 | INFO     | ***************************************
[2025-11-21 00:07:22] 2025-11-21 05:06:50,306 | INFO     | 
[2025-11-21 00:07:22] 2025-11-21 05:06:50,307 | INFO     | architecture information:
[2025-11-21 00:07:22] 2025-11-21 05:06:50,308 | INFO     | executing command: cat /etc/os-release
[2025-11-21 00:07:22] 2025-11-21 05:06:50,324 | INFO     | cat /etc/os-release:
[2025-11-21 00:07:22] NAME="CentOS Linux"
[2025-11-21 00:07:22] VERSION="7 (Core)"
[2025-11-21 00:07:22] ID="centos"
[2025-11-21 00:07:22] ID_LIKE="rhel fedora"
[2025-11-21 00:07:22] VERSION_ID="7"
[2025-11-21 00:07:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 00:07:22] ANSI_COLOR="0;31"
[2025-11-21 00:07:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 00:07:22] HOME_URL="https://www.centos.org/"
[2025-11-21 00:07:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 00:07:22] 
[2025-11-21 00:07:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 00:07:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 00:07:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 00:07:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 00:07:22] 
[2025-11-21 00:07:22] 2025-11-21 05:06:50,324 | INFO     | ***************************************
[2025-11-21 00:07:22] 2025-11-21 05:06:50,827 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 00:07:22] 2025-11-21 05:06:50,846 | INFO     | sufficient remaining disk space (17057185792 B)
[2025-11-21 00:07:22] 2025-11-21 05:06:50,846 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 00:07:22] 2025-11-21 05:06:50,846 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 00:07:22] 2025-11-21 05:06:50,847 | INFO     | update_server=False
[2025-11-21 00:07:22] 2025-11-21 05:06:50,847 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 00:07:22] 2025-11-21 05:06:50,847 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:07:22] 2025-11-21 05:06:50,847 | INFO     | aborting loop
[2025-11-21 00:07:22] 2025-11-21 05:06:50,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:07:22] 2025-11-21 05:06:50,848 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 00:07:22] 2025-11-21 05:06:51,244 | INFO     | all data control threads have been joined
[2025-11-21 00:07:22] 2025-11-21 05:06:51,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 00:07:22] 2025-11-21 05:06:51,469 | INFO     | all job control threads have been joined
[2025-11-21 00:07:22] 2025-11-21 05:06:51,756 | INFO     | all payload control threads have been joined
[2025-11-21 00:07:22] 2025-11-21 05:06:51,851 | INFO     | [job] retrieve thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:51,853 | INFO     | [job] job monitor thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:51,854 | INFO     | [job] queue monitor thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,127 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,135 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,249 | INFO     | [data] control thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,301 | INFO     | [payload] validate_post thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,350 | INFO     | [data] copytool_in thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,474 | INFO     | [job] control thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,721 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,761 | INFO     | [payload] control thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:52,854 | INFO     | [data] copytool_out thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:53,217 | INFO     | [payload] failed_post thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:53,309 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:53,340 | INFO     | [job] validate thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:55,435 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 00:07:22] 2025-11-21 05:06:55,667 | INFO     | [monitor] cgroup control has ended
[2025-11-21 00:07:22] 2025-11-21 05:06:56,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140204096313152)>', '<ExcThread(monitor, started 140203285010176)>']
[2025-11-21 00:07:22] 2025-11-21 05:07:01,778 | INFO     | all workflow threads have been joined
[2025-11-21 00:07:22] 2025-11-21 05:07:01,778 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 00:07:22] 2025-11-21 05:07:01,784 | INFO     | traces error code: 0
[2025-11-21 00:07:22] 2025-11-21 05:07:01,784 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 00:07:22] 2025-11-21 05:07:21,637 | INFO     | PID=19581 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 00:07:22] 2025-11-21 05:07:21,638 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 00:07:22] 2025-11-21 05:07:21,638 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 00:07:22] 2025-11-21 05:07:21,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 00:07:22] 2025-11-21 05:07:21,638 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 00:07:22] 2025-11-21 05:07:21,638 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 00:07:22] 2025-11-21 05:07:21,638 | INFO     | [monitor] control thread has ended
[2025-11-21 00:07:22] 2025-11-21 05:07:21,770 [wrapper] ==== pilot stdout END ====
[2025-11-21 00:07:22] 2025-11-21 05:07:21,775 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 00:07:22] 2025-11-21 05:07:21,779 [wrapper] pilotpid: 19581
[2025-11-21 00:07:22] 2025-11-21 05:07:21,783 [wrapper] Pilot exit status: 0
[2025-11-21 00:07:22] 2025-11-21 05:07:21,799 [wrapper] pandaids: 6893829614 6893829614
[2025-11-21 00:07:22] 2025-11-21 05:07:21,843 [wrapper] cleanup supervisor_pilot 22767 19582
[2025-11-21 00:07:22] 2025-11-21 05:07:21,848 [wrapper] Test setup, not cleaning
[2025-11-21 00:07:22] 2025-11-21 05:07:21,852 [wrapper] apfmon messages muted
[2025-11-21 00:07:22] 2025-11-21 05:07:21,857 [wrapper] ==== wrapper stdout END ====
[2025-11-21 00:07:22] 2025-11-21 05:07:21,861 [wrapper] ==== wrapper stderr END ====
[2025-11-21 00:07:22]  *** Error codes and diagnostics ***
[2025-11-21 00:07:22]     "exeErrorCode": 0,
[2025-11-21 00:07:22]     "exeErrorDiag": "",
[2025-11-21 00:07:22]     "pilotErrorCode": 0,
[2025-11-21 00:07:22]     "pilotErrorDiag": "",
[2025-11-21 00:07:22]  *** Listing of results directory ***
[2025-11-21 00:07:22] total 1721964
[2025-11-21 00:07:22] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 00:07:22] -rwx------ 1 boincer umatlas     36292 Nov 20 05:10 runpilot2-wrapper.sh
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:11 queuedata.json
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 00:07:22] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:12 run_atlas
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:12 job.xml
[2025-11-21 00:07:22] -rw-r--r-- 3 boincer umatlas 411357649 Nov 20 05:12 EVNT.47493127._000012.pool.root.1
[2025-11-21 00:07:22] -rw-r--r-- 3 boincer umatlas 411357649 Nov 20 05:12 ATLAS.root_0
[2025-11-21 00:07:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:12 start_atlas.sh
[2025-11-21 00:07:22] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:12 shared
[2025-11-21 00:07:22] -rw-r--r-- 2 boincer umatlas    590098 Nov 20 05:12 input.tar.gz
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:12 boinc_lockfile
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas      2784 Nov 20 11:31 pandaJob.out
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas        57 Nov 20 11:31 setup.sh.local
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas    989440 Nov 20 11:31 agis_schedconf.cvmfs.json
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas       533 Nov 20 23:54 boinc_task_state.xml
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas      5912 Nov 21 00:02 init_data.xml
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas 920183112 Nov 21 00:05 HITS.47523449._000118.pool.root.1
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas      1062 Nov 21 00:06 memory_monitor_summary.json
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas   1526164 Nov 21 00:06 agis_ddmendpoints.agis.ALL.json
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas   1992711 Nov 21 00:06 log.47523449._000118.job.log.tgz.1
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas        96 Nov 21 00:06 pilot_heartbeat.json
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas      8674 Nov 21 00:06 heartbeat.json
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 00:07 boinc_mmap_file
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas        29 Nov 21 00:07 wrapper_checkpoint.txt
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas       815 Nov 21 00:07 pilotlog.txt
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas   6239836 Nov 21 00:07 log.47523449._000118.job.log.1
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas       353 Nov 21 00:07 output.list
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas       620 Nov 21 00:07 runtime_log
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas   8253440 Nov 21 00:07 result.tar.gz
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas       793 Nov 21 00:07 v70LDmfnGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoCGKDmbIZEtm.diag
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas      9428 Nov 21 00:07 runtime_log.err
[2025-11-21 00:07:22] -rw-r--r-- 1 boincer umatlas     23445 Nov 21 00:07 stderr.txt
[2025-11-21 00:07:22] HITS file was successfully produced:
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas 920183112 Nov 21 00:05 shared/HITS.pool.root.1
[2025-11-21 00:07:22]  *** Contents of shared directory: ***
[2025-11-21 00:07:22] total 1309000
[2025-11-21 00:07:22] -rw-r--r-- 3 boincer umatlas 411357649 Nov 20 05:12 ATLAS.root_0
[2025-11-21 00:07:22] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:12 start_atlas.sh
[2025-11-21 00:07:22] -rw-r--r-- 2 boincer umatlas    590098 Nov 20 05:12 input.tar.gz
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas 920183112 Nov 21 00:05 HITS.pool.root.1
[2025-11-21 00:07:22] -rw------- 1 boincer umatlas   8253440 Nov 21 00:07 result.tar.gz
00:07:23 (15886): run_atlas exited; CPU time 346601.953070
00:07:23 (15886): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN