Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:11:26 (19926): wrapper (7.7.26015): starting
05:11:26 (19926): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:11:26] Arguments: --nthreads 8
[2025-11-20 05:11:26] Threads: 8
[2025-11-20 05:11:26] Checking for CVMFS
[2025-11-20 05:11:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:11:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:11:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:11:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:11:26] 2.11.2.0 2910 38640 87888 153076 0 1 17219094 20275200 1 130560 0 3546996 99.340 2735450 31032 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:11:26] CVMFS is ok
[2025-11-20 05:11:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:11:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:11:26] Further information can be found at the LHC@home message board.
[2025-11-20 05:11:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:11:26] Checking for apptainer binary...
[2025-11-20 05:11:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:11:26] Running /usr/bin/apptainer --version
[2025-11-20 05:11:26] apptainer version 1.3.2-1.el7
[2025-11-20 05:11:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:11:28] c-204-13.aglt2.org
[2025-11-20 05:11:28] apptainer works
[2025-11-20 05:11:28] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:11:28] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:11:28] Starting ATLAS job with PandaID=6893834527
[2025-11-20 05:11:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:13:34 (25782): wrapper (7.7.26015): starting
17:13:34 (25782): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 17:13:34] Arguments: --nthreads 8
[2025-11-20 17:13:34] Threads: 8
[2025-11-20 17:13:34] This job has been restarted, cleaning up previous attempt
[2025-11-20 17:13:34] Checking for CVMFS
[2025-11-20 17:13:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 17:13:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 17:13:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 17:13:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 17:13:35] 2.11.2.0 2910 39362 81512 153096 2 57 18115262 20275200 1 130560 0 3774675 99.377 2762105 28002 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 17:13:35] CVMFS is ok
[2025-11-20 17:13:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 17:13:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 17:13:35] Further information can be found at the LHC@home message board.
[2025-11-20 17:13:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 17:13:35] Checking for apptainer binary...
[2025-11-20 17:13:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 17:13:35] Running /usr/bin/apptainer --version
[2025-11-20 17:13:35] apptainer version 1.3.2-1.el7
[2025-11-20 17:13:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 17:13:37] c-204-13.aglt2.org
[2025-11-20 17:13:37] apptainer works
[2025-11-20 17:13:37] Set ATHENA_PROC_NUMBER=8
[2025-11-20 17:13:37] Set ATHENA_CORE_NUMBER=8
[2025-11-20 17:13:37] Starting ATLAS job with PandaID=6893834527
[2025-11-20 17:13:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 05:41:14]  *** The last 200 lines of the pilot log: ***
[2025-11-21 05:41:14] 2025-11-21 10:40:21,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,416 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 05:41:14] 2025-11-21 10:40:22,421 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-21 05:41:14] 2025-11-21 10:40:22,423 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893834527/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,423 | INFO     | extracted standard info from prmon json
[2025-11-21 05:41:14] 2025-11-21 10:40:22,423 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 05:41:14] 2025-11-21 10:40:22,424 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 05:41:14] 2025-11-21 10:40:22,435 | INFO     | fitting pss+swap vs Time
[2025-11-21 05:41:14] 2025-11-21 10:40:22,436 | INFO     | sum of square deviations: 122621379753.92377
[2025-11-21 05:41:14] 2025-11-21 10:40:22,450 | INFO     | time since job start (44787s) is within the limit (172800.0s)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,451 | INFO     | sum of deviations: 874986643365.2103
[2025-11-21 05:41:14] 2025-11-21 10:40:22,451 | INFO     | mean x: 1763699224.1171663
[2025-11-21 05:41:14] 2025-11-21 10:40:22,452 | INFO     | mean y: 3278876.4277929156
[2025-11-21 05:41:14] 2025-11-21 10:40:22,452 | INFO     | intersect: -12581910322.332008
[2025-11-21 05:41:14] 2025-11-21 10:40:22,452 | INFO     | chi2: 6.130896627068771
[2025-11-21 05:41:14] 2025-11-21 10:40:22,453 | INFO     | sum of square deviations: 120132661949.50609
[2025-11-21 05:41:14] 2025-11-21 10:40:22,465 | INFO     | sum of deviations: 1149439985264.2773
[2025-11-21 05:41:14] 2025-11-21 10:40:22,465 | INFO     | mean x: 1763699071.6213992
[2025-11-21 05:41:14] 2025-11-21 10:40:22,466 | INFO     | mean y: 3295683.8669410152
[2025-11-21 05:41:14] 2025-11-21 10:40:22,466 | INFO     | intersect: -16871933766.6152
[2025-11-21 05:41:14] 2025-11-21 10:40:22,466 | INFO     | chi2: 3.0515458655401995
[2025-11-21 05:41:14] 2025-11-21 10:40:22,467 | INFO     | current chi2=3.0515458655401995 (change=50.22676043717333 %)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,468 | INFO     | sum of square deviations: 117677851757.56232
[2025-11-21 05:41:14] 2025-11-21 10:40:22,486 | INFO     | sum of deviations: 1221281531741.2183
[2025-11-21 05:41:14] 2025-11-21 10:40:22,486 | INFO     | mean x: 1763698919.1256907
[2025-11-21 05:41:14] 2025-11-21 10:40:22,486 | INFO     | mean y: 3300138.0635359115
[2025-11-21 05:41:14] 2025-11-21 10:40:22,486 | INFO     | intersect: -18300678778.18766
[2025-11-21 05:41:14] 2025-11-21 10:40:22,487 | INFO     | chi2: 2.708234761339579
[2025-11-21 05:41:14] 2025-11-21 10:40:22,487 | INFO     | current chi2=2.708234761339579 (change=11.25039961147187 %)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,487 | INFO     | right removable region: 723
[2025-11-21 05:41:14] 2025-11-21 10:40:22,488 | INFO     | sum of square deviations: 120132385619.50609
[2025-11-21 05:41:14] 2025-11-21 10:40:22,500 | INFO     | sum of deviations: 633025967987.938
[2025-11-21 05:41:14] 2025-11-21 10:40:22,500 | INFO     | mean x: 1763699376.6213992
[2025-11-21 05:41:14] 2025-11-21 10:40:22,500 | INFO     | mean y: 3293677.452674897
[2025-11-21 05:41:14] 2025-11-21 10:40:22,501 | INFO     | intersect: -9290349326.205462
[2025-11-21 05:41:14] 2025-11-21 10:40:22,501 | INFO     | chi2: 3.6171625250590527
[2025-11-21 05:41:14] 2025-11-21 10:40:22,501 | INFO     | current chi2=3.6171625250590527 (change=41.00108442395242 %)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,502 | INFO     | sum of square deviations: 117677343444.812
[2025-11-21 05:41:14] 2025-11-21 10:40:22,513 | INFO     | sum of deviations: 587344630019.1548
[2025-11-21 05:41:14] 2025-11-21 10:40:22,513 | INFO     | mean x: 1763699529.1243093
[2025-11-21 05:41:14] 2025-11-21 10:40:22,513 | INFO     | mean y: 3296512.809392265
[2025-11-21 05:41:14] 2025-11-21 10:40:22,513 | INFO     | intersect: -8799582759.22557
[2025-11-21 05:41:14] 2025-11-21 10:40:22,514 | INFO     | chi2: 3.578134027235187
[2025-11-21 05:41:14] 2025-11-21 10:40:22,515 | INFO     | current chi2=3.578134027235187 (change=1.0789810397924706 %)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,515 | INFO     | left removable region: 20
[2025-11-21 05:41:14] 2025-11-21 10:40:22,516 | INFO     | sum of square deviations: 107731916065.31415
[2025-11-21 05:41:14] 2025-11-21 10:40:22,527 | INFO     | sum of deviations: 850057265974.2284
[2025-11-21 05:41:14] 2025-11-21 10:40:22,527 | INFO     | mean x: 1763699498.6330013
[2025-11-21 05:41:14] 2025-11-21 10:40:22,527 | INFO     | mean y: 3323394.981507824
[2025-11-21 05:41:14] 2025-11-21 10:40:22,527 | INFO     | intersect: -13913124288.907688
[2025-11-21 05:41:14] 2025-11-21 10:40:22,528 | INFO     | chi2: 0.08585093690301707
[2025-11-21 05:41:14] 2025-11-21 10:40:22,528 | INFO     | current memory leak: 7.89 B/s (using 703 data points, chi2=0.09)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,529 | INFO     | could have reported an average CPU frequency of 2182 MHz (28 samples)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,529 | INFO     | ..............................
[2025-11-21 05:41:14] 2025-11-21 10:40:22,529 | INFO     | . Timing measurements:
[2025-11-21 05:41:14] 2025-11-21 10:40:22,529 | INFO     | . get job = 0 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,529 | INFO     | . initial setup = 2 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,530 | INFO     | . payload setup = 9 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,530 | INFO     | . stage-in = 0 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,530 | INFO     | . payload execution = 44741 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,530 | INFO     | . stage-out = 3 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,530 | INFO     | . log creation = 0 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,530 | INFO     | ..............................
[2025-11-21 05:41:14] 2025-11-21 10:40:22,623 | INFO     | 
[2025-11-21 05:41:14] 2025-11-21 10:40:22,624 | INFO     | job summary report
[2025-11-21 05:41:14] 2025-11-21 10:40:22,624 | INFO     | --------------------------------------------------
[2025-11-21 05:41:14] 2025-11-21 10:40:22,624 | INFO     | PanDA job id: 6893834527
[2025-11-21 05:41:14] 2025-11-21 10:40:22,624 | INFO     | task id: 47523449
[2025-11-21 05:41:14] 2025-11-21 10:40:22,624 | INFO     | errors: (none)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,625 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 05:41:14] 2025-11-21 10:40:22,625 | INFO     | pilot state: finished 
[2025-11-21 05:41:14] 2025-11-21 10:40:22,625 | INFO     | transexitcode: 0
[2025-11-21 05:41:14] 2025-11-21 10:40:22,625 | INFO     | exeerrorcode: 0
[2025-11-21 05:41:14] 2025-11-21 10:40:22,625 | INFO     | exeerrordiag: 
[2025-11-21 05:41:14] 2025-11-21 10:40:22,625 | INFO     | exitcode: 0
[2025-11-21 05:41:14] 2025-11-21 10:40:22,626 | INFO     | exitmsg: OK
[2025-11-21 05:41:14] 2025-11-21 10:40:22,626 | INFO     | cpuconsumptiontime: 347846 s
[2025-11-21 05:41:14] 2025-11-21 10:40:22,626 | INFO     | nevents: 1000
[2025-11-21 05:41:14] 2025-11-21 10:40:22,626 | INFO     | neventsw: 0
[2025-11-21 05:41:14] 2025-11-21 10:40:22,626 | INFO     | pid: 3552
[2025-11-21 05:41:14] 2025-11-21 10:40:22,626 | INFO     | pgrp: 3552
[2025-11-21 05:41:14] 2025-11-21 10:40:22,627 | INFO     | corecount: 8
[2025-11-21 05:41:14] 2025-11-21 10:40:22,627 | INFO     | event service: False
[2025-11-21 05:41:14] 2025-11-21 10:40:22,627 | INFO     | sizes: {0: 2298626, 1: 2298825, 7: 2299087, 12: 2299115, 44754: 2344923, 44759: 2353917, 44762: 2354101, 44771: 2354347}
[2025-11-21 05:41:14] 2025-11-21 10:40:22,627 | INFO     | --------------------------------------------------
[2025-11-21 05:41:14] 2025-11-21 10:40:22,627 | INFO     | 
[2025-11-21 05:41:14] 2025-11-21 10:40:22,628 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 05:41:14] 2025-11-21 10:40:22,655 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,655 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,656 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,656 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,656 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,657 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,657 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,657 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,657 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,657 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,658 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,658 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,658 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,658 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,659 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 05:41:14] 2025-11-21 10:40:22,659 | INFO     | job 6893834527 has completed (purged errors)
[2025-11-21 05:41:14] 2025-11-21 10:40:22,659 | INFO     | overall cleanup function is called
[2025-11-21 05:41:14] 2025-11-21 10:40:23,676 | INFO     | --- collectZombieJob: --- 10, [3552]
[2025-11-21 05:41:14] 2025-11-21 10:40:23,676 | INFO     | zombie collector waiting for pid 3552
[2025-11-21 05:41:14] 2025-11-21 10:40:23,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 05:41:14] 2025-11-21 10:40:23,676 | INFO     | collected zombie processes
[2025-11-21 05:41:14] 2025-11-21 10:40:23,676 | INFO     | will attempt to kill all subprocesses of pid=3552
[2025-11-21 05:41:14] 2025-11-21 10:40:23,767 | INFO     | process IDs to be killed: [3552] (in reverse order)
[2025-11-21 05:41:14] 2025-11-21 10:40:23,825 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 05:41:14] 2025-11-21 10:40:23,825 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 05:41:14] 2025-11-21 10:40:23,829 | INFO     | did not find any defunct processes belonging to 3552
[2025-11-21 05:41:14] 2025-11-21 10:40:23,832 | INFO     | did not find any defunct processes belonging to 3552
[2025-11-21 05:41:14] 2025-11-21 10:40:23,835 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 05:41:14] 2025-11-21 10:40:23,835 | INFO     | ready for new job
[2025-11-21 05:41:14] 2025-11-21 10:40:23,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 05:41:14] 2025-11-21 10:40:23,838 | INFO     | ***************************************
[2025-11-21 05:41:14] 2025-11-21 10:40:23,838 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 05:41:14] 2025-11-21 10:40:23,839 | INFO     | ***************************************
[2025-11-21 05:41:14] 2025-11-21 10:40:23,839 | INFO     | 
[2025-11-21 05:41:14] 2025-11-21 10:40:23,839 | INFO     | architecture information:
[2025-11-21 05:41:14] 2025-11-21 10:40:23,840 | INFO     | executing command: cat /etc/os-release
[2025-11-21 05:41:14] 2025-11-21 10:40:23,859 | INFO     | cat /etc/os-release:
[2025-11-21 05:41:14] NAME="CentOS Linux"
[2025-11-21 05:41:14] VERSION="7 (Core)"
[2025-11-21 05:41:14] ID="centos"
[2025-11-21 05:41:14] ID_LIKE="rhel fedora"
[2025-11-21 05:41:14] VERSION_ID="7"
[2025-11-21 05:41:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 05:41:14] ANSI_COLOR="0;31"
[2025-11-21 05:41:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 05:41:14] HOME_URL="https://www.centos.org/"
[2025-11-21 05:41:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 05:41:14] 
[2025-11-21 05:41:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 05:41:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 05:41:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 05:41:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 05:41:14] 
[2025-11-21 05:41:14] 2025-11-21 10:40:23,859 | INFO     | ***************************************
[2025-11-21 05:41:14] 2025-11-21 10:40:24,363 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 05:41:14] 2025-11-21 10:40:24,382 | INFO     | sufficient remaining disk space (17054040064 B)
[2025-11-21 05:41:14] 2025-11-21 10:40:24,382 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 05:41:14] 2025-11-21 10:40:24,383 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 05:41:14] 2025-11-21 10:40:24,383 | INFO     | update_server=False
[2025-11-21 05:41:14] 2025-11-21 10:40:24,383 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 05:41:14] 2025-11-21 10:40:24,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 05:41:14] 2025-11-21 10:40:24,384 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:41:14] 2025-11-21 10:40:24,384 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-21 05:41:14] 2025-11-21 10:40:24,385 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 05:41:14] 2025-11-21 10:40:24,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 05:41:14] 2025-11-21 10:40:24,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 05:41:14] 2025-11-21 10:40:24,405 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 05:41:14] 2025-11-21 10:40:24,405 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 05:41:14] 2025-11-21 10:40:24,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 05:41:14] 2025-11-21 10:40:24,405 | INFO     | will abort loop
[2025-11-21 05:41:14] 2025-11-21 10:40:24,495 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 05:41:14] 2025-11-21 10:40:24,929 | INFO     | all data control threads have been joined
[2025-11-21 05:41:14] 2025-11-21 10:40:25,112 | INFO     | all payload control threads have been joined
[2025-11-21 05:41:14] 2025-11-21 10:40:25,389 | INFO     | [job] retrieve thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:25,389 | INFO     | [job] queue monitor thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:25,411 | INFO     | [job] job monitor thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:25,515 | INFO     | all job control threads have been joined
[2025-11-21 05:41:14] 2025-11-21 10:40:25,605 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:25,935 | INFO     | [data] control thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,107 | INFO     | [job] validate thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,115 | INFO     | [data] copytool_in thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,117 | INFO     | [payload] control thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,298 | INFO     | [payload] validate_post thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,389 | INFO     | [data] copytool_out thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,493 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,509 | INFO     | [payload] failed_post thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,516 | INFO     | [job] control thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,656 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:26,657 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:40:28,501 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 05:41:14] 2025-11-21 10:41:08,749 | INFO     | [monitor] cgroup control has ended
[2025-11-21 05:41:14] 2025-11-21 10:41:09,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140522526086976)>', '<ExcThread(monitor, started 140521817216768)>']
[2025-11-21 05:41:14] 2025-11-21 10:41:09,609 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 05:41:14] 2025-11-21 10:41:09,609 | INFO     | [monitor] control thread has ended
[2025-11-21 05:41:14] 2025-11-21 10:41:14,345 | INFO     | all workflow threads have been joined
[2025-11-21 05:41:14] 2025-11-21 10:41:14,345 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 05:41:14] 2025-11-21 10:41:14,351 | INFO     | traces error code: 0
[2025-11-21 05:41:14] 2025-11-21 10:41:14,352 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 05:41:14] 2025-11-21 10:41:14,485 [wrapper] ==== pilot stdout END ====
[2025-11-21 05:41:14] 2025-11-21 10:41:14,491 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 05:41:14] 2025-11-21 10:41:14,495 [wrapper] pilotpid: 29479
[2025-11-21 05:41:14] 2025-11-21 10:41:14,501 [wrapper] Pilot exit status: 0
[2025-11-21 05:41:14] 2025-11-21 10:41:14,519 [wrapper] pandaids: 6893834527 6893834527
[2025-11-21 05:41:14] 2025-11-21 10:41:14,573 [wrapper] cleanup supervisor_pilot  1885 29480
[2025-11-21 05:41:14] 2025-11-21 10:41:14,579 [wrapper] Test setup, not cleaning
[2025-11-21 05:41:14] 2025-11-21 10:41:14,583 [wrapper] apfmon messages muted
[2025-11-21 05:41:14] 2025-11-21 10:41:14,588 [wrapper] ==== wrapper stdout END ====
[2025-11-21 05:41:14] 2025-11-21 10:41:14,592 [wrapper] ==== wrapper stderr END ====
[2025-11-21 05:41:14]  *** Error codes and diagnostics ***
[2025-11-21 05:41:14]     "exeErrorCode": 0,
[2025-11-21 05:41:14]     "exeErrorDiag": "",
[2025-11-21 05:41:14]     "pilotErrorCode": 0,
[2025-11-21 05:41:14]     "pilotErrorDiag": "",
[2025-11-21 05:41:14]  *** Listing of results directory ***
[2025-11-21 05:41:14] total 1718196
[2025-11-21 05:41:14] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:08 queuedata.json
[2025-11-21 05:41:14] -rwx------ 1 boincer umatlas     36292 Nov 20 05:09 runpilot2-wrapper.sh
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 05:41:14] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:11 run_atlas
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:11 job.xml
[2025-11-21 05:41:14] -rw-r--r-- 3 boincer umatlas 407927166 Nov 20 05:11 EVNT.47493127._000064.pool.root.1
[2025-11-21 05:41:14] -rw-r--r-- 3 boincer umatlas 407927166 Nov 20 05:11 ATLAS.root_0
[2025-11-21 05:41:14] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-21 05:41:14] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:11 shared
[2025-11-21 05:41:14] -rw-r--r-- 2 boincer umatlas    590100 Nov 20 05:11 input.tar.gz
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:11 boinc_lockfile
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas      2781 Nov 20 17:13 pandaJob.out
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas        57 Nov 20 17:13 setup.sh.local
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas    989472 Nov 20 17:13 agis_schedconf.cvmfs.json
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas       533 Nov 21 05:30 boinc_task_state.xml
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas 923338904 Nov 21 05:39 HITS.47523449._000631.pool.root.1
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas      1062 Nov 21 05:40 memory_monitor_summary.json
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas   1526164 Nov 21 05:40 agis_ddmendpoints.agis.ALL.json
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas   1990202 Nov 21 05:40 log.47523449._000631.job.log.tgz.1
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas        96 Nov 21 05:40 pilot_heartbeat.json
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas      8668 Nov 21 05:40 heartbeat.json
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas      5912 Nov 21 05:40 init_data.xml
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 05:40 boinc_mmap_file
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas        29 Nov 21 05:40 wrapper_checkpoint.txt
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas      4738 Nov 21 05:41 pilotlog.txt
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas   6165281 Nov 21 05:41 log.47523449._000631.job.log.1
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas       353 Nov 21 05:41 output.list
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas       620 Nov 21 05:41 runtime_log
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas   8171520 Nov 21 05:41 result.tar.gz
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas       793 Nov 21 05:41 vJKLDmgmGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxBGKDmQxRPfm.diag
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas      9428 Nov 21 05:41 runtime_log.err
[2025-11-21 05:41:14] -rw-r--r-- 1 boincer umatlas     23363 Nov 21 05:41 stderr.txt
[2025-11-21 05:41:14] HITS file was successfully produced:
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas 923338904 Nov 21 05:39 shared/HITS.pool.root.1
[2025-11-21 05:41:14]  *** Contents of shared directory: ***
[2025-11-21 05:41:14] total 1308652
[2025-11-21 05:41:14] -rw-r--r-- 3 boincer umatlas 407927166 Nov 20 05:11 ATLAS.root_0
[2025-11-21 05:41:14] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-21 05:41:14] -rw-r--r-- 2 boincer umatlas    590100 Nov 20 05:11 input.tar.gz
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas 923338904 Nov 21 05:39 HITS.pool.root.1
[2025-11-21 05:41:14] -rw------- 1 boincer umatlas   8171520 Nov 21 05:41 result.tar.gz
05:41:16 (25782): run_atlas exited; CPU time 345674.114503
05:41:16 (25782): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN