Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:11:28 (24352): wrapper (7.7.26015): starting
05:11:28 (24352): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:11:28] Arguments: --nthreads 8
[2025-11-20 05:11:28] Threads: 8
[2025-11-20 05:11:28] Checking for CVMFS
[2025-11-20 05:11:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:11:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:11:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:11:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:11:29] 2.11.2.0 2893 56937 84412 153076 0 1 18278280 20275201 1 130560 0 14302429 99.787 4003059 33127 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:11:29] CVMFS is ok
[2025-11-20 05:11:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:11:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:11:29] Further information can be found at the LHC@home message board.
[2025-11-20 05:11:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:11:29] Checking for apptainer binary...
[2025-11-20 05:11:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:11:29] Running /usr/bin/apptainer --version
[2025-11-20 05:11:29] apptainer version 1.3.2-1.el7
[2025-11-20 05:11:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:11:31] c-204-22.aglt2.org
[2025-11-20 05:11:31] apptainer works
[2025-11-20 05:11:31] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:11:31] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:11:31] Starting ATLAS job with PandaID=6893834497
[2025-11-20 05:11:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 18:04:13]  *** The last 200 lines of the pilot log: ***
[2025-11-20 18:04:13] 2025-11-20 23:03:17,024 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 18:04:13] 2025-11-20 23:03:17,038 | INFO     | fitting pss+swap vs Time
[2025-11-20 18:04:13] 2025-11-20 23:03:17,039 | INFO     | sum of square deviations: 135582452461.37012
[2025-11-20 18:04:13] 2025-11-20 23:03:17,050 | INFO     | sufficient remaining disk space (17418944512 B)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,053 | INFO     | sum of deviations: 754267615217.4539
[2025-11-20 18:04:13] 2025-11-20 23:03:17,053 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,054 | INFO     | mean x: 1763656664.5559947
[2025-11-20 18:04:13] 2025-11-20 23:03:17,054 | INFO     | mean y: 2858798.306982872
[2025-11-20 18:04:13] 2025-11-20 23:03:17,055 | INFO     | intersect: -9808655024.368832
[2025-11-20 18:04:13] 2025-11-20 23:03:17,055 | INFO     | chi2: 7.59726153457536
[2025-11-20 18:04:13] 2025-11-20 23:03:17,056 | INFO     | sum of square deviations: 132920698702.31418
[2025-11-20 18:04:13] 2025-11-20 23:03:17,070 | INFO     | sum of deviations: 1030753894156.9767
[2025-11-20 18:04:13] 2025-11-20 23:03:17,070 | INFO     | mean x: 1763656512.0596817
[2025-11-20 18:04:13] 2025-11-20 23:03:17,070 | INFO     | mean y: 2874638.3116710875
[2025-11-20 18:04:13] 2025-11-20 23:03:17,070 | INFO     | intersect: -13673669613.326225
[2025-11-20 18:04:13] 2025-11-20 23:03:17,071 | INFO     | chi2: 3.849693337314053
[2025-11-20 18:04:13] 2025-11-20 23:03:17,071 | INFO     | current chi2=3.849693337314053 (change=49.327881898049895 %)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,072 | INFO     | sum of square deviations: 130294015368.23767
[2025-11-20 18:04:13] 2025-11-20 23:03:17,084 | INFO     | sum of deviations: 1159490787355.1863
[2025-11-20 18:04:13] 2025-11-20 23:03:17,084 | INFO     | mean x: 1763656359.563418
[2025-11-20 18:04:13] 2025-11-20 23:03:17,084 | INFO     | mean y: 2882112.459279039
[2025-11-20 18:04:13] 2025-11-20 23:03:17,084 | INFO     | intersect: -15691954639.59521
[2025-11-20 18:04:13] 2025-11-20 23:03:17,085 | INFO     | chi2: 2.9244635151320715
[2025-11-20 18:04:13] 2025-11-20 23:03:17,085 | INFO     | current chi2=2.9244635151320715 (change=24.033857793657877 %)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,086 | INFO     | right removable region: 748
[2025-11-20 18:04:13] 2025-11-20 23:03:17,086 | INFO     | sum of square deviations: 132920441282.31422
[2025-11-20 18:04:13] 2025-11-20 23:03:17,098 | INFO     | sum of deviations: 549175425462.7385
[2025-11-20 18:04:13] 2025-11-20 23:03:17,098 | INFO     | mean x: 1763656817.0596817
[2025-11-20 18:04:13] 2025-11-20 23:03:17,099 | INFO     | mean y: 2870530.4946949603
[2025-11-20 18:04:13] 2025-11-20 23:03:17,099 | INFO     | intersect: -7283871625.453004
[2025-11-20 18:04:13] 2025-11-20 23:03:17,100 | INFO     | chi2: 5.472171496160731
[2025-11-20 18:04:13] 2025-11-20 23:03:17,100 | INFO     | current chi2=5.472171496160731 (change=27.971789950145613 %)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,101 | INFO     | sum of square deviations: 130293546766.36316
[2025-11-20 18:04:13] 2025-11-20 23:03:17,112 | INFO     | sum of deviations: 487328066210.30066
[2025-11-20 18:04:13] 2025-11-20 23:03:17,112 | INFO     | mean x: 1763656969.5620828
[2025-11-20 18:04:13] 2025-11-20 23:03:17,112 | INFO     | mean y: 2874119.7570093456
[2025-11-20 18:04:13] 2025-11-20 23:03:17,113 | INFO     | intersect: -6593611752.07355
[2025-11-20 18:04:13] 2025-11-20 23:03:17,113 | INFO     | chi2: 5.360436705165194
[2025-11-20 18:04:13] 2025-11-20 23:03:17,114 | INFO     | current chi2=5.360436705165194 (change=2.0418729762751378 %)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,114 | INFO     | left removable region: 20
[2025-11-20 18:04:13] 2025-11-20 23:03:17,114 | INFO     | sum of square deviations: 119638952541.4272
[2025-11-20 18:04:13] 2025-11-20 23:03:17,126 | INFO     | sum of deviations: 832970255362.1716
[2025-11-20 18:04:13] 2025-11-20 23:03:17,126 | INFO     | mean x: 1763656939.070055
[2025-11-20 18:04:13] 2025-11-20 23:03:17,126 | INFO     | mean y: 2904601.9574175826
[2025-11-20 18:04:13] 2025-11-20 23:03:17,127 | INFO     | intersect: -12276321684.312145
[2025-11-20 18:04:13] 2025-11-20 23:03:17,127 | INFO     | chi2: 0.4174988894103205
[2025-11-20 18:04:13] 2025-11-20 23:03:17,128 | INFO     | current memory leak: 6.96 B/s (using 728 data points, chi2=0.42)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,128 | INFO     | could have reported an average CPU frequency of 2147 MHz (29 samples)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,129 | INFO     | ..............................
[2025-11-20 18:04:13] 2025-11-20 23:03:17,129 | INFO     | . Timing measurements:
[2025-11-20 18:04:13] 2025-11-20 23:03:17,129 | INFO     | . get job = 0 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,129 | INFO     | . initial setup = 3 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,129 | INFO     | . payload setup = 9 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,129 | INFO     | . stage-in = 0 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,130 | INFO     | . payload execution = 46244 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,130 | INFO     | . stage-out = 3 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,130 | INFO     | . log creation = 0 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,130 | INFO     | ..............................
[2025-11-20 18:04:13] 2025-11-20 23:03:17,222 | INFO     | 
[2025-11-20 18:04:13] 2025-11-20 23:03:17,223 | INFO     | job summary report
[2025-11-20 18:04:13] 2025-11-20 23:03:17,223 | INFO     | --------------------------------------------------
[2025-11-20 18:04:13] 2025-11-20 23:03:17,223 | INFO     | PanDA job id: 6893834497
[2025-11-20 18:04:13] 2025-11-20 23:03:17,223 | INFO     | task id: 47523449
[2025-11-20 18:04:13] 2025-11-20 23:03:17,223 | INFO     | errors: (none)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,223 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 18:04:13] 2025-11-20 23:03:17,224 | INFO     | pilot state: finished 
[2025-11-20 18:04:13] 2025-11-20 23:03:17,224 | INFO     | transexitcode: 0
[2025-11-20 18:04:13] 2025-11-20 23:03:17,224 | INFO     | exeerrorcode: 0
[2025-11-20 18:04:13] 2025-11-20 23:03:17,224 | INFO     | exeerrordiag: 
[2025-11-20 18:04:13] 2025-11-20 23:03:17,224 | INFO     | exitcode: 0
[2025-11-20 18:04:13] 2025-11-20 23:03:17,224 | INFO     | exitmsg: OK
[2025-11-20 18:04:13] 2025-11-20 23:03:17,224 | INFO     | cpuconsumptiontime: 356141 s
[2025-11-20 18:04:13] 2025-11-20 23:03:17,225 | INFO     | nevents: 1000
[2025-11-20 18:04:13] 2025-11-20 23:03:17,225 | INFO     | neventsw: 0
[2025-11-20 18:04:13] 2025-11-20 23:03:17,225 | INFO     | pid: 3565
[2025-11-20 18:04:13] 2025-11-20 23:03:17,225 | INFO     | pgrp: 3565
[2025-11-20 18:04:13] 2025-11-20 23:03:17,225 | INFO     | corecount: 8
[2025-11-20 18:04:13] 2025-11-20 23:03:17,225 | INFO     | event service: False
[2025-11-20 18:04:13] 2025-11-20 23:03:17,225 | INFO     | sizes: {0: 2297030, 1: 2297229, 7: 2297491, 11: 2297519, 46258: 2343911, 46262: 2354685, 46268: 2354875}
[2025-11-20 18:04:13] 2025-11-20 23:03:17,226 | INFO     | --------------------------------------------------
[2025-11-20 18:04:13] 2025-11-20 23:03:17,226 | INFO     | 
[2025-11-20 18:04:13] 2025-11-20 23:03:17,226 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 18:04:13] 2025-11-20 23:03:17,234 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6893834497: 8537109 B (within 2537553920 B limit)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,234 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6893834497/HITS.47523449._000601.pool.root.1 does not exist (skip from workdir size calculation)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,235 | INFO     | total size of present files: 0 B (workdir size: 8537109 B)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,235 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6893834497/HITS.47523449._000601.pool.root.1 since it does not exist
[2025-11-20 18:04:13] 2025-11-20 23:03:17,249 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,249 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,250 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,254 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 18:04:13] 2025-11-20 23:03:17,254 | INFO     | job 6893834497 has completed (purged errors)
[2025-11-20 18:04:13] 2025-11-20 23:03:17,255 | INFO     | overall cleanup function is called
[2025-11-20 18:04:13] 2025-11-20 23:03:17,338 | INFO     | number of running child processes to parent process 3565: 1
[2025-11-20 18:04:13] 2025-11-20 23:03:17,338 | INFO     | maximum number of monitored processes: 16
[2025-11-20 18:04:13] 2025-11-20 23:03:17,339 | INFO     | aborting job monitoring since job object (job id=6893834497) has expired
[2025-11-20 18:04:13] 2025-11-20 23:03:18,277 | INFO     | --- collectZombieJob: --- 10, [3565]
[2025-11-20 18:04:13] 2025-11-20 23:03:18,277 | INFO     | zombie collector waiting for pid 3565
[2025-11-20 18:04:13] 2025-11-20 23:03:18,277 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 18:04:13] 2025-11-20 23:03:18,277 | INFO     | collected zombie processes
[2025-11-20 18:04:13] 2025-11-20 23:03:18,278 | INFO     | will attempt to kill all subprocesses of pid=3565
[2025-11-20 18:04:13] 2025-11-20 23:03:18,372 | INFO     | process IDs to be killed: [3565] (in reverse order)
[2025-11-20 18:04:13] 2025-11-20 23:03:18,431 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 18:04:13] 2025-11-20 23:03:18,432 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 18:04:13] 2025-11-20 23:03:18,437 | INFO     | did not find any defunct processes belonging to 3565
[2025-11-20 18:04:13] 2025-11-20 23:03:18,442 | INFO     | did not find any defunct processes belonging to 3565
[2025-11-20 18:04:13] 2025-11-20 23:03:18,445 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 18:04:13] 2025-11-20 23:03:18,445 | INFO     | ready for new job
[2025-11-20 18:04:13] 2025-11-20 23:03:18,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 18:04:13] 2025-11-20 23:03:18,450 | INFO     | ***************************************
[2025-11-20 18:04:13] 2025-11-20 23:03:18,450 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 18:04:13] 2025-11-20 23:03:18,451 | INFO     | ***************************************
[2025-11-20 18:04:13] 2025-11-20 23:03:18,451 | INFO     | 
[2025-11-20 18:04:13] 2025-11-20 23:03:18,451 | INFO     | architecture information:
[2025-11-20 18:04:13] 2025-11-20 23:03:18,452 | INFO     | executing command: cat /etc/os-release
[2025-11-20 18:04:13] 2025-11-20 23:03:18,469 | INFO     | cat /etc/os-release:
[2025-11-20 18:04:13] NAME="CentOS Linux"
[2025-11-20 18:04:13] VERSION="7 (Core)"
[2025-11-20 18:04:13] ID="centos"
[2025-11-20 18:04:13] ID_LIKE="rhel fedora"
[2025-11-20 18:04:13] VERSION_ID="7"
[2025-11-20 18:04:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 18:04:13] ANSI_COLOR="0;31"
[2025-11-20 18:04:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 18:04:13] HOME_URL="https://www.centos.org/"
[2025-11-20 18:04:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 18:04:13] 
[2025-11-20 18:04:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 18:04:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 18:04:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 18:04:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 18:04:13] 
[2025-11-20 18:04:13] 2025-11-20 23:03:18,470 | INFO     | ***************************************
[2025-11-20 18:04:13] 2025-11-20 23:03:18,972 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 18:04:13] 2025-11-20 23:03:18,992 | INFO     | sufficient remaining disk space (17434673152 B)
[2025-11-20 18:04:13] 2025-11-20 23:03:18,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 18:04:13] 2025-11-20 23:03:18,992 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 18:04:13] 2025-11-20 23:03:18,993 | INFO     | update_server=False
[2025-11-20 18:04:13] 2025-11-20 23:03:18,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 18:04:13] 2025-11-20 23:03:18,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 18:04:13] 2025-11-20 23:03:18,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 18:04:13] 2025-11-20 23:03:18,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 18:04:13] 2025-11-20 23:03:18,994 | INFO     | aborting loop
[2025-11-20 18:04:13] 2025-11-20 23:03:19,334 | INFO     | all data control threads have been joined
[2025-11-20 18:04:13] 2025-11-20 23:03:19,519 | INFO     | all payload control threads have been joined
[2025-11-20 18:04:13] 2025-11-20 23:03:19,997 | INFO     | [job] retrieve thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:19,998 | INFO     | [job] queue monitor thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,000 | INFO     | [job] job monitor thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,218 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,339 | INFO     | [data] control thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,421 | INFO     | all job control threads have been joined
[2025-11-20 18:04:13] 2025-11-20 23:03:20,525 | INFO     | [payload] control thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,566 | INFO     | [payload] validate_post thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,764 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,765 | INFO     | [data] copytool_in thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,996 | INFO     | [payload] failed_post thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:20,999 | INFO     | [data] copytool_out thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:21,054 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:21,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 18:04:13] 2025-11-20 23:03:21,220 | INFO     | [job] validate thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:21,426 | INFO     | [job] control thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:25,202 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 18:04:13] 2025-11-20 23:03:48,708 | INFO     | PID=28922 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 18:04:13] 2025-11-20 23:03:48,708 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 18:04:13] 2025-11-20 23:03:48,708 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 18:04:13] 2025-11-20 23:03:48,709 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 18:04:13] 2025-11-20 23:04:07,900 | INFO     | [monitor] cgroup control has ended
[2025-11-20 18:04:13] 2025-11-20 23:04:07,932 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686067812160)>', '<ExcThread(monitor, started 139684944537344)>']
[2025-11-20 18:04:13] 2025-11-20 23:04:08,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 18:04:13] 2025-11-20 23:04:08,783 | INFO     | [monitor] control thread has ended
[2025-11-20 18:04:13] 2025-11-20 23:04:12,944 | INFO     | all workflow threads have been joined
[2025-11-20 18:04:13] 2025-11-20 23:04:12,944 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 18:04:13] 2025-11-20 23:04:12,944 | INFO     | traces error code: 0
[2025-11-20 18:04:13] 2025-11-20 23:04:12,945 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 18:04:13] 2025-11-20 23:04:13,057 [wrapper] ==== pilot stdout END ====
[2025-11-20 18:04:13] 2025-11-20 23:04:13,061 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 18:04:13] 2025-11-20 23:04:13,066 [wrapper] pilotpid: 28922
[2025-11-20 18:04:13] 2025-11-20 23:04:13,071 [wrapper] Pilot exit status: 0
[2025-11-20 18:04:13] 2025-11-20 23:04:13,090 [wrapper] pandaids: 6893834497
[2025-11-20 18:04:13] 2025-11-20 23:04:13,144 [wrapper] cleanup supervisor_pilot 26452 28924
[2025-11-20 18:04:13] 2025-11-20 23:04:13,149 [wrapper] Test setup, not cleaning
[2025-11-20 18:04:13] 2025-11-20 23:04:13,154 [wrapper] apfmon messages muted
[2025-11-20 18:04:13] 2025-11-20 23:04:13,159 [wrapper] ==== wrapper stdout END ====
[2025-11-20 18:04:13] 2025-11-20 23:04:13,163 [wrapper] ==== wrapper stderr END ====
[2025-11-20 18:04:13]  *** Error codes and diagnostics ***
[2025-11-20 18:04:13]     "exeErrorCode": 0,
[2025-11-20 18:04:13]     "exeErrorDiag": "",
[2025-11-20 18:04:13]     "pilotErrorCode": 0,
[2025-11-20 18:04:13]     "pilotErrorDiag": "",
[2025-11-20 18:04:13]  *** Listing of results directory ***
[2025-11-20 18:04:13] total 1319712
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:08 queuedata.json
[2025-11-20 18:04:13] -rwx------ 1 boincer umatlas     36292 Nov 20 05:09 runpilot2-wrapper.sh
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 18:04:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:11 run_atlas
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:11 job.xml
[2025-11-20 18:04:13] -rw-r--r-- 2 boincer umatlas 408936090 Nov 20 05:11 EVNT.47493127._000061.pool.root.1
[2025-11-20 18:04:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-20 18:04:13] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:11 shared
[2025-11-20 18:04:13] -rw-r--r-- 2 boincer umatlas    590096 Nov 20 05:11 input.tar.gz
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:11 boinc_lockfile
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas      2781 Nov 20 05:11 pandaJob.out
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas        57 Nov 20 05:11 setup.sh.local
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas    989435 Nov 20 05:11 agis_schedconf.cvmfs.json
[2025-11-20 18:04:13] drwx------ 5 boincer umatlas      4096 Nov 20 05:11 pilot3
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas       533 Nov 20 17:47 boinc_task_state.xml
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas      5912 Nov 20 18:00 init_data.xml
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas 921720518 Nov 20 18:02 HITS.47523449._000601.pool.root.1
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas      1062 Nov 20 18:03 memory_monitor_summary.json
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas   1526164 Nov 20 18:03 agis_ddmendpoints.agis.ALL.json
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas   2011283 Nov 20 18:03 log.47523449._000601.job.log.tgz.1
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas        95 Nov 20 18:03 pilot_heartbeat.json
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas      8671 Nov 20 18:03 heartbeat.json
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 18:04 boinc_mmap_file
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas        29 Nov 20 18:04 wrapper_checkpoint.txt
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas      4746 Nov 20 18:04 pilotlog.txt
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas   6391148 Nov 20 18:04 log.47523449._000601.job.log.1
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas       353 Nov 20 18:04 output.list
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas       620 Nov 20 18:04 runtime_log
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas   8417280 Nov 20 18:04 result.tar.gz
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas      9343 Nov 20 18:04 runtime_log.err
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas       668 Nov 20 18:04 pCGLDmgmGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmuBGKDmF9bCOo.diag
[2025-11-20 18:04:13] -rw-r--r-- 1 boincer umatlas     21499 Nov 20 18:04 stderr.txt
[2025-11-20 18:04:13] HITS file was successfully produced:
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas 921720518 Nov 20 18:02 shared/HITS.pool.root.1
[2025-11-20 18:04:13]  *** Contents of shared directory: ***
[2025-11-20 18:04:13] total 1308296
[2025-11-20 18:04:13] -rw-r--r-- 2 boincer umatlas 408936090 Nov 20 05:11 ATLAS.root_0
[2025-11-20 18:04:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-20 18:04:13] -rw-r--r-- 2 boincer umatlas    590096 Nov 20 05:11 input.tar.gz
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas 921720518 Nov 20 18:02 HITS.pool.root.1
[2025-11-20 18:04:13] -rw------- 1 boincer umatlas   8417280 Nov 20 18:04 result.tar.gz
18:04:15 (24352): run_atlas exited; CPU time 352184.658348
18:04:15 (24352): called boinc_finish(0)

</stderr_txt>
]]>

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