Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:11:27 (13741): wrapper (7.7.26015): starting
05:11:27 (13741): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:11:27] Arguments: --nthreads 8
[2025-11-20 05:11:27] Threads: 8
[2025-11-20 05:11:27] Checking for CVMFS
[2025-11-20 05:11:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:11:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:11:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:11:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:11:27] 2.11.2.0 2802 64522 82460 153076 0 1 17383264 20275200 1 130560 0 17969737 99.910 3189724 21797 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:11:27] CVMFS is ok
[2025-11-20 05:11:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:11:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:11:27] Further information can be found at the LHC@home message board.
[2025-11-20 05:11:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:11:27] Checking for apptainer binary...
[2025-11-20 05:11:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:11:27] Running /usr/bin/apptainer --version
[2025-11-20 05:11:27] apptainer version 1.3.2-1.el7
[2025-11-20 05:11:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:11:29] c-204-8.aglt2.org
[2025-11-20 05:11:29] apptainer works
[2025-11-20 05:11:29] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:11:29] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:11:29] Starting ATLAS job with PandaID=6893834022
[2025-11-20 05:11:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:47:35 (14885): wrapper (7.7.26015): starting
07:47:35 (14885): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 07:47:35] Arguments: --nthreads 8
[2025-11-20 07:47:35] Threads: 8
[2025-11-20 07:47:35] This job has been restarted, cleaning up previous attempt
[2025-11-20 07:47:35] Checking for CVMFS
[2025-11-20 07:47:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 07:47:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 07:47:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 07:47:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 07:47:35] 2.11.2.0 2802 64679 81360 153082 0 49 17596070 20275200 1 130560 0 18066830 99.911 3197868 21819 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 07:47:35] CVMFS is ok
[2025-11-20 07:47:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 07:47:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 07:47:35] Further information can be found at the LHC@home message board.
[2025-11-20 07:47:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 07:47:35] Checking for apptainer binary...
[2025-11-20 07:47:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 07:47:35] Running /usr/bin/apptainer --version
[2025-11-20 07:47:35] apptainer version 1.3.2-1.el7
[2025-11-20 07:47:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 07:47:36] c-204-8.aglt2.org
[2025-11-20 07:47:36] apptainer works
[2025-11-20 07:47:36] Set ATHENA_PROC_NUMBER=8
[2025-11-20 07:47:36] Set ATHENA_CORE_NUMBER=8
[2025-11-20 07:47:36] Starting ATLAS job with PandaID=6893834022
[2025-11-20 07:47:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 20:40:17]  *** The last 200 lines of the pilot log: ***
[2025-11-20 20:40:17] 2025-11-21 01:40:02,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,239 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 20:40:17] 2025-11-21 01:40:03,243 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-11-20 20:40:17] 2025-11-21 01:40:03,245 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893834022/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,246 | INFO     | extracted standard info from prmon json
[2025-11-20 20:40:17] 2025-11-21 01:40:03,246 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 20:40:17] 2025-11-21 01:40:03,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 20:40:17] 2025-11-21 01:40:03,261 | INFO     | fitting pss+swap vs Time
[2025-11-20 20:40:17] 2025-11-21 01:40:03,261 | INFO     | sum of square deviations: 135582160026.75545
[2025-11-20 20:40:17] 2025-11-21 01:40:03,275 | INFO     | sum of deviations: 909360188196.8403
[2025-11-20 20:40:17] 2025-11-21 01:40:03,275 | INFO     | mean x: 1763666024.536232
[2025-11-20 20:40:17] 2025-11-21 01:40:03,275 | INFO     | mean y: 2879612.860342556
[2025-11-20 20:40:17] 2025-11-21 01:40:03,275 | INFO     | intersect: -11826166831.540234
[2025-11-20 20:40:17] 2025-11-21 01:40:03,276 | INFO     | chi2: 4.938708670531299
[2025-11-20 20:40:17] 2025-11-21 01:40:03,277 | INFO     | sum of square deviations: 132920401692.80612
[2025-11-20 20:40:17] 2025-11-21 01:40:03,289 | INFO     | sum of deviations: 1137527797473.965
[2025-11-20 20:40:17] 2025-11-21 01:40:03,289 | INFO     | mean x: 1763665872.0397878
[2025-11-20 20:40:17] 2025-11-21 01:40:03,289 | INFO     | mean y: 2892680.0344827585
[2025-11-20 20:40:17] 2025-11-21 01:40:03,289 | INFO     | intersect: -15090493507.121462
[2025-11-20 20:40:17] 2025-11-21 01:40:03,290 | INFO     | chi2: 2.3257563012540206
[2025-11-20 20:40:17] 2025-11-21 01:40:03,290 | INFO     | current chi2=2.3257563012540206 (change=52.90760284906988 %)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,291 | INFO     | sum of square deviations: 130293668033.92488
[2025-11-20 20:40:17] 2025-11-21 01:40:03,303 | INFO     | sum of deviations: 1168065432424.5688
[2025-11-20 20:40:17] 2025-11-21 01:40:03,303 | INFO     | mean x: 1763665719.542056
[2025-11-20 20:40:17] 2025-11-21 01:40:03,303 | INFO     | mean y: 2894444.0453938586
[2025-11-20 20:40:17] 2025-11-21 01:40:03,303 | INFO     | intersect: -15808134537.139576
[2025-11-20 20:40:17] 2025-11-21 01:40:03,304 | INFO     | chi2: 2.145684191820516
[2025-11-20 20:40:17] 2025-11-21 01:40:03,304 | INFO     | current chi2=2.145684191820516 (change=7.742518394399779 %)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,304 | INFO     | right removable region: 748
[2025-11-20 20:40:17] 2025-11-21 01:40:03,305 | INFO     | sum of square deviations: 132920153422.80603
[2025-11-20 20:40:17] 2025-11-21 01:40:03,316 | INFO     | sum of deviations: 714588511134.913
[2025-11-20 20:40:17] 2025-11-21 01:40:03,317 | INFO     | mean x: 1763666177.0397878
[2025-11-20 20:40:17] 2025-11-21 01:40:03,317 | INFO     | mean y: 2890752.702917772
[2025-11-20 20:40:17] 2025-11-21 01:40:03,317 | INFO     | intersect: -9478708200.77548
[2025-11-20 20:40:17] 2025-11-21 01:40:03,318 | INFO     | chi2: 2.9715018425931077
[2025-11-20 20:40:17] 2025-11-21 01:40:03,318 | INFO     | current chi2=2.9715018425931077 (change=39.832412866875224 %)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,319 | INFO     | sum of square deviations: 130293355104.08766
[2025-11-20 20:40:17] 2025-11-21 01:40:03,330 | INFO     | sum of deviations: 669680329358.7476
[2025-11-20 20:40:17] 2025-11-21 01:40:03,330 | INFO     | mean x: 1763666329.5393858
[2025-11-20 20:40:17] 2025-11-21 01:40:03,331 | INFO     | mean y: 2893358.5847797063
[2025-11-20 20:40:17] 2025-11-21 01:40:03,331 | INFO     | intersect: -9061979117.078526
[2025-11-20 20:40:17] 2025-11-21 01:40:03,332 | INFO     | chi2: 2.9292598685967666
[2025-11-20 20:40:17] 2025-11-21 01:40:03,332 | INFO     | current chi2=2.9292598685967666 (change=1.421569840235343 %)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,332 | INFO     | left removable region: 20
[2025-11-20 20:40:17] 2025-11-21 01:40:03,333 | INFO     | sum of square deviations: 119638760208.76353
[2025-11-20 20:40:17] 2025-11-21 01:40:03,347 | INFO     | sum of deviations: 873300241342.6511
[2025-11-20 20:40:17] 2025-11-21 01:40:03,347 | INFO     | mean x: 1763666299.0412087
[2025-11-20 20:40:17] 2025-11-21 01:40:03,347 | INFO     | mean y: 2911614.5782967033
[2025-11-20 20:40:17] 2025-11-21 01:40:03,347 | INFO     | intersect: -12870927949.731796
[2025-11-20 20:40:17] 2025-11-21 01:40:03,348 | INFO     | chi2: 0.115811715428082
[2025-11-20 20:40:17] 2025-11-21 01:40:03,348 | INFO     | current memory leak: 7.30 B/s (using 728 data points, chi2=0.12)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,349 | INFO     | could have reported an average CPU frequency of 2171 MHz (29 samples)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,349 | INFO     | ..............................
[2025-11-20 20:40:17] 2025-11-21 01:40:03,349 | INFO     | . Timing measurements:
[2025-11-20 20:40:17] 2025-11-21 01:40:03,349 | INFO     | . get job = 0 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,349 | INFO     | . initial setup = 1 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,350 | INFO     | . payload setup = 8 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,350 | INFO     | . stage-in = 0 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,350 | INFO     | . payload execution = 46289 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,350 | INFO     | . stage-out = 3 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,350 | INFO     | . log creation = 0 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,350 | INFO     | ..............................
[2025-11-20 20:40:17] 2025-11-21 01:40:03,412 | INFO     | time since job start (46331s) is within the limit (172800.0s)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,445 | INFO     | 
[2025-11-20 20:40:17] 2025-11-21 01:40:03,446 | INFO     | job summary report
[2025-11-20 20:40:17] 2025-11-21 01:40:03,446 | INFO     | --------------------------------------------------
[2025-11-20 20:40:17] 2025-11-21 01:40:03,446 | INFO     | PanDA job id: 6893834022
[2025-11-20 20:40:17] 2025-11-21 01:40:03,446 | INFO     | task id: 47523449
[2025-11-20 20:40:17] 2025-11-21 01:40:03,446 | INFO     | errors: (none)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,447 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 20:40:17] 2025-11-21 01:40:03,447 | INFO     | pilot state: finished 
[2025-11-20 20:40:17] 2025-11-21 01:40:03,447 | INFO     | transexitcode: 0
[2025-11-20 20:40:17] 2025-11-21 01:40:03,447 | INFO     | exeerrorcode: 0
[2025-11-20 20:40:17] 2025-11-21 01:40:03,447 | INFO     | exeerrordiag: 
[2025-11-20 20:40:17] 2025-11-21 01:40:03,447 | INFO     | exitcode: 0
[2025-11-20 20:40:17] 2025-11-21 01:40:03,448 | INFO     | exitmsg: OK
[2025-11-20 20:40:17] 2025-11-21 01:40:03,448 | INFO     | cpuconsumptiontime: 359380 s
[2025-11-20 20:40:17] 2025-11-21 01:40:03,448 | INFO     | nevents: 1000
[2025-11-20 20:40:17] 2025-11-21 01:40:03,448 | INFO     | neventsw: 0
[2025-11-20 20:40:17] 2025-11-21 01:40:03,448 | INFO     | pid: 25020
[2025-11-20 20:40:17] 2025-11-21 01:40:03,448 | INFO     | pgrp: 25020
[2025-11-20 20:40:17] 2025-11-21 01:40:03,449 | INFO     | corecount: 8
[2025-11-20 20:40:17] 2025-11-21 01:40:03,449 | INFO     | event service: False
[2025-11-20 20:40:17] 2025-11-21 01:40:03,449 | INFO     | sizes: {0: 2297030, 1: 2297229, 6: 2297491, 11: 2297519, 46301: 2343883, 46306: 2354473, 46308: 2354657, 46314: 2354903}
[2025-11-20 20:40:17] 2025-11-21 01:40:03,449 | INFO     | --------------------------------------------------
[2025-11-20 20:40:17] 2025-11-21 01:40:03,449 | INFO     | 
[2025-11-20 20:40:17] 2025-11-21 01:40:03,450 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 20:40:17] 2025-11-21 01:40:03,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,477 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,478 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,479 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,479 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,479 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,479 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,479 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,480 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,480 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,480 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,480 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,480 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,480 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,481 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 20:40:17] 2025-11-21 01:40:03,481 | INFO     | job 6893834022 has completed (purged errors)
[2025-11-20 20:40:17] 2025-11-21 01:40:03,481 | INFO     | overall cleanup function is called
[2025-11-20 20:40:17] 2025-11-21 01:40:04,497 | INFO     | --- collectZombieJob: --- 10, [25020]
[2025-11-20 20:40:17] 2025-11-21 01:40:04,498 | INFO     | zombie collector waiting for pid 25020
[2025-11-20 20:40:17] 2025-11-21 01:40:04,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 20:40:17] 2025-11-21 01:40:04,498 | INFO     | collected zombie processes
[2025-11-20 20:40:17] 2025-11-21 01:40:04,498 | INFO     | will attempt to kill all subprocesses of pid=25020
[2025-11-20 20:40:17] 2025-11-21 01:40:04,589 | INFO     | process IDs to be killed: [25020] (in reverse order)
[2025-11-20 20:40:17] 2025-11-21 01:40:04,649 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 20:40:17] 2025-11-21 01:40:04,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 20:40:17] 2025-11-21 01:40:04,653 | INFO     | did not find any defunct processes belonging to 25020
[2025-11-20 20:40:17] 2025-11-21 01:40:04,657 | INFO     | did not find any defunct processes belonging to 25020
[2025-11-20 20:40:17] 2025-11-21 01:40:04,659 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 20:40:17] 2025-11-21 01:40:04,660 | INFO     | ready for new job
[2025-11-20 20:40:17] 2025-11-21 01:40:04,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 20:40:17] 2025-11-21 01:40:04,664 | INFO     | ***************************************
[2025-11-20 20:40:17] 2025-11-21 01:40:04,664 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 20:40:17] 2025-11-21 01:40:04,664 | INFO     | ***************************************
[2025-11-20 20:40:17] 2025-11-21 01:40:04,664 | INFO     | 
[2025-11-20 20:40:17] 2025-11-21 01:40:04,665 | INFO     | architecture information:
[2025-11-20 20:40:17] 2025-11-21 01:40:04,666 | INFO     | executing command: cat /etc/os-release
[2025-11-20 20:40:17] 2025-11-21 01:40:04,684 | INFO     | cat /etc/os-release:
[2025-11-20 20:40:17] NAME="CentOS Linux"
[2025-11-20 20:40:17] VERSION="7 (Core)"
[2025-11-20 20:40:17] ID="centos"
[2025-11-20 20:40:17] ID_LIKE="rhel fedora"
[2025-11-20 20:40:17] VERSION_ID="7"
[2025-11-20 20:40:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 20:40:17] ANSI_COLOR="0;31"
[2025-11-20 20:40:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 20:40:17] HOME_URL="https://www.centos.org/"
[2025-11-20 20:40:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 20:40:17] 
[2025-11-20 20:40:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 20:40:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 20:40:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 20:40:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 20:40:17] 
[2025-11-20 20:40:17] 2025-11-21 01:40:04,684 | INFO     | ***************************************
[2025-11-20 20:40:17] 2025-11-21 01:40:05,188 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 20:40:17] 2025-11-21 01:40:05,208 | INFO     | sufficient remaining disk space (17454596096 B)
[2025-11-20 20:40:17] 2025-11-21 01:40:05,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 20:40:17] 2025-11-21 01:40:05,209 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 20:40:17] 2025-11-21 01:40:05,209 | INFO     | update_server=False
[2025-11-20 20:40:17] 2025-11-21 01:40:05,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 20:40:17] 2025-11-21 01:40:05,210 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-20 20:40:17] 2025-11-21 01:40:05,210 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 20:40:17] 2025-11-21 01:40:05,211 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:40:17] 2025-11-21 01:40:05,211 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 20:40:17] 2025-11-21 01:40:05,211 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 20:40:17] 2025-11-21 01:40:05,233 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 20:40:17] 2025-11-21 01:40:05,233 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 20:40:17] 2025-11-21 01:40:05,233 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 20:40:17] 2025-11-21 01:40:05,234 | INFO     | will abort loop
[2025-11-20 20:40:17] 2025-11-21 01:40:05,761 | INFO     | all job control threads have been joined
[2025-11-20 20:40:17] 2025-11-21 01:40:05,900 | INFO     | all payload control threads have been joined
[2025-11-20 20:40:17] 2025-11-21 01:40:06,117 | INFO     | all data control threads have been joined
[2025-11-20 20:40:17] 2025-11-21 01:40:06,215 | INFO     | [job] retrieve thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:06,216 | INFO     | [job] queue monitor thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:06,239 | INFO     | [job] job monitor thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:06,656 | INFO     | [payload] validate_post thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:06,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 20:40:17] 2025-11-21 01:40:06,735 | INFO     | [data] copytool_in thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:06,767 | INFO     | [job] control thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:06,906 | INFO     | [payload] control thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:07,028 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:07,063 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:07,122 | INFO     | [data] control thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:07,275 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:07,423 | INFO     | [job] validate thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:07,522 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:07,635 | INFO     | [payload] failed_post thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:08,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 20:40:17] 2025-11-21 01:40:08,671 | INFO     | [data] copytool_out thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:09,083 | INFO     | [monitor] cgroup control has ended
[2025-11-20 20:40:17] 2025-11-21 01:40:12,177 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 20:40:17] 2025-11-21 01:40:12,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714925893440)>', '<ExcThread(monitor, started 140714151220992)>']
[2025-11-20 20:40:17] 2025-11-21 01:40:12,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 20:40:17] 2025-11-21 01:40:12,243 | INFO     | [monitor] control thread has ended
[2025-11-20 20:40:17] 2025-11-21 01:40:17,221 | INFO     | all workflow threads have been joined
[2025-11-20 20:40:17] 2025-11-21 01:40:17,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 20:40:17] 2025-11-21 01:40:17,226 | INFO     | traces error code: 0
[2025-11-20 20:40:17] 2025-11-21 01:40:17,226 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 20:40:17] 2025-11-21 01:40:17,340 [wrapper] ==== pilot stdout END ====
[2025-11-20 20:40:17] 2025-11-21 01:40:17,345 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 20:40:17] 2025-11-21 01:40:17,350 [wrapper] pilotpid: 18589
[2025-11-20 20:40:17] 2025-11-21 01:40:17,354 [wrapper] Pilot exit status: 0
[2025-11-20 20:40:17] 2025-11-21 01:40:17,371 [wrapper] pandaids: 6893834022 6893834022
[2025-11-20 20:40:17] 2025-11-21 01:40:17,414 [wrapper] cleanup supervisor_pilot 22531 18590
[2025-11-20 20:40:17] 2025-11-21 01:40:17,419 [wrapper] Test setup, not cleaning
[2025-11-20 20:40:17] 2025-11-21 01:40:17,424 [wrapper] apfmon messages muted
[2025-11-20 20:40:17] 2025-11-21 01:40:17,428 [wrapper] ==== wrapper stdout END ====
[2025-11-20 20:40:17] 2025-11-21 01:40:17,433 [wrapper] ==== wrapper stderr END ====
[2025-11-20 20:40:17]  *** Error codes and diagnostics ***
[2025-11-20 20:40:17]     "exeErrorCode": 0,
[2025-11-20 20:40:17]     "exeErrorDiag": "",
[2025-11-20 20:40:17]     "pilotErrorCode": 0,
[2025-11-20 20:40:17]     "pilotErrorDiag": "",
[2025-11-20 20:40:17]  *** Listing of results directory ***
[2025-11-20 20:40:17] total 1735264
[2025-11-20 20:40:17] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:08 queuedata.json
[2025-11-20 20:40:17] -rwx------ 1 boincer umatlas     36292 Nov 20 05:09 runpilot2-wrapper.sh
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 20:40:17] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:11 run_atlas
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:11 job.xml
[2025-11-20 20:40:17] -rw-r--r-- 3 boincer umatlas 411526611 Nov 20 05:11 EVNT.47493127._000047.pool.root.1
[2025-11-20 20:40:17] -rw-r--r-- 3 boincer umatlas 411526611 Nov 20 05:11 ATLAS.root_0
[2025-11-20 20:40:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-20 20:40:17] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:11 shared
[2025-11-20 20:40:17] -rw-r--r-- 2 boincer umatlas    590102 Nov 20 05:11 input.tar.gz
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:11 boinc_lockfile
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas      2781 Nov 20 07:47 pandaJob.out
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas        57 Nov 20 07:47 setup.sh.local
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas    989448 Nov 20 07:47 agis_schedconf.cvmfs.json
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas       532 Nov 20 20:31 boinc_task_state.xml
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas      5911 Nov 20 20:37 init_data.xml
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas 933190488 Nov 20 20:39 HITS.47523449._000461.pool.root.1
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas        96 Nov 20 20:39 pilot_heartbeat.json
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas      1061 Nov 20 20:39 memory_monitor_summary.json
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas   1526164 Nov 20 20:39 agis_ddmendpoints.agis.ALL.json
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas        29 Nov 20 20:39 wrapper_checkpoint.txt
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 20:39 boinc_mmap_file
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas   1998016 Nov 20 20:39 log.47523449._000461.job.log.tgz.1
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas      8648 Nov 20 20:40 heartbeat.json
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas      4738 Nov 20 20:40 pilotlog.txt
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas   6368536 Nov 20 20:40 log.47523449._000461.job.log.1
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas       353 Nov 20 20:40 output.list
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas       620 Nov 20 20:40 runtime_log
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas   8386560 Nov 20 20:40 result.tar.gz
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas      9423 Nov 20 20:40 runtime_log.err
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas       792 Nov 20 20:40 ar7KDmgmGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpBGKDm14fO4n.diag
[2025-11-20 20:40:17] -rw-r--r-- 1 boincer umatlas     23375 Nov 20 20:40 stderr.txt
[2025-11-20 20:40:17] HITS file was successfully produced:
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas 933190488 Nov 20 20:39 shared/HITS.pool.root.1
[2025-11-20 20:40:17]  *** Contents of shared directory: ***
[2025-11-20 20:40:17] total 1322000
[2025-11-20 20:40:17] -rw-r--r-- 3 boincer umatlas 411526611 Nov 20 05:11 ATLAS.root_0
[2025-11-20 20:40:17] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-20 20:40:17] -rw-r--r-- 2 boincer umatlas    590102 Nov 20 05:11 input.tar.gz
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas 933190488 Nov 20 20:39 HITS.pool.root.1
[2025-11-20 20:40:17] -rw------- 1 boincer umatlas   8386560 Nov 20 20:40 result.tar.gz
20:40:18 (14885): run_atlas exited; CPU time 355197.082470
20:40:18 (14885): called boinc_finish(0)

</stderr_txt>
]]>

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