Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:11:18 (24017): wrapper (7.7.26015): starting
05:11:18 (24017): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 05:11:18] Arguments: --nthreads 12
[2025-11-20 05:11:18] Threads: 12
[2025-11-20 05:11:18] Checking for CVMFS
[2025-11-20 05:11:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:11:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:11:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:11:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:11:19] 2.11.2.0 2925 278905 93428 153076 1 1 18230723 20275201 1 130560 1 124933037 99.975 15460858 13617 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:11:19] CVMFS is ok
[2025-11-20 05:11:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:11:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:11:19] Further information can be found at the LHC@home message board.
[2025-11-20 05:11:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:11:19] Checking for apptainer binary...
[2025-11-20 05:11:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:11:19] Running /usr/bin/apptainer --version
[2025-11-20 05:11:19] apptainer version 1.3.2-1.el7
[2025-11-20 05:11:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:11:20] c-205-10.aglt2.org
[2025-11-20 05:11:20] apptainer works
[2025-11-20 05:11:20] Set ATHENA_PROC_NUMBER=12
[2025-11-20 05:11:20] Set ATHENA_CORE_NUMBER=12
[2025-11-20 05:11:20] Starting ATLAS job with PandaID=6893833783
[2025-11-20 05:11:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:21:42]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:21:42] 2025-11-20 19:21:09,109 | INFO     | time since job start (32973s) is within the limit (172800.0s)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,230 | INFO     | monitor loop #2478: job 0:6893833783 is in state 'finished'
[2025-11-20 14:21:42] 2025-11-20 19:21:10,230 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,247 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 14:21:42] 2025-11-20 19:21:10,251 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-11-20 14:21:42] 2025-11-20 19:21:10,254 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6893833783/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,255 | INFO     | extracted standard info from prmon json
[2025-11-20 14:21:42] 2025-11-20 19:21:10,255 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 14:21:42] 2025-11-20 19:21:10,255 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 14:21:42] 2025-11-20 19:21:10,264 | INFO     | fitting pss+swap vs Time
[2025-11-20 14:21:42] 2025-11-20 19:21:10,264 | INFO     | sum of square deviations: 48826828412.98317
[2025-11-20 14:21:42] 2025-11-20 19:21:10,270 | INFO     | sum of deviations: 724678999624.2496
[2025-11-20 14:21:42] 2025-11-20 19:21:10,271 | INFO     | mean x: 1763649966.5055556
[2025-11-20 14:21:42] 2025-11-20 19:21:10,271 | INFO     | mean y: 3433015.0833333335
[2025-11-20 14:21:42] 2025-11-20 19:21:10,271 | INFO     | intersect: -26172342372.259724
[2025-11-20 14:21:42] 2025-11-20 19:21:10,272 | INFO     | chi2: 5.109122726435909
[2025-11-20 14:21:42] 2025-11-20 19:21:10,272 | INFO     | sum of square deviations: 47483045992.98306
[2025-11-20 14:21:42] 2025-11-20 19:21:10,278 | INFO     | sum of deviations: 902188398293.7771
[2025-11-20 14:21:42] 2025-11-20 19:21:10,278 | INFO     | mean x: 1763649814.0056074
[2025-11-20 14:21:42] 2025-11-20 19:21:10,278 | INFO     | mean y: 3453132.4074766356
[2025-11-20 14:21:42] 2025-11-20 19:21:10,279 | INFO     | intersect: -33506284239.621532
[2025-11-20 14:21:42] 2025-11-20 19:21:10,279 | INFO     | chi2: 2.7028940698965904
[2025-11-20 14:21:42] 2025-11-20 19:21:10,279 | INFO     | current chi2=2.7028940698965904 (change=47.09670887506529 %)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,280 | INFO     | sum of square deviations: 46164147760.48297
[2025-11-20 14:21:42] 2025-11-20 19:21:10,286 | INFO     | sum of deviations: 946682917873.8602
[2025-11-20 14:21:42] 2025-11-20 19:21:10,286 | INFO     | mean x: 1763649661.5056603
[2025-11-20 14:21:42] 2025-11-20 19:21:10,286 | INFO     | mean y: 3458271.213207547
[2025-11-20 14:21:42] 2025-11-20 19:21:10,286 | INFO     | intersect: -36163504375.29827
[2025-11-20 14:21:42] 2025-11-20 19:21:10,287 | INFO     | chi2: 2.4402410658096696
[2025-11-20 14:21:42] 2025-11-20 19:21:10,287 | INFO     | current chi2=2.4402410658096696 (change=9.717473097159505 %)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,287 | INFO     | right removable region: 529
[2025-11-20 14:21:42] 2025-11-20 19:21:10,287 | INFO     | sum of square deviations: 47483044162.98306
[2025-11-20 14:21:42] 2025-11-20 19:21:10,293 | INFO     | sum of deviations: 558579982198.8484
[2025-11-20 14:21:42] 2025-11-20 19:21:10,293 | INFO     | mean x: 1763650119.0056074
[2025-11-20 14:21:42] 2025-11-20 19:21:10,293 | INFO     | mean y: 3451811.0504672895
[2025-11-20 14:21:42] 2025-11-20 19:21:10,294 | INFO     | intersect: -20743736357.797947
[2025-11-20 14:21:42] 2025-11-20 19:21:10,294 | INFO     | chi2: 2.931311284866373
[2025-11-20 14:21:42] 2025-11-20 19:21:10,294 | INFO     | current chi2=2.931311284866373 (change=42.625937135958424 %)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,295 | INFO     | sum of square deviations: 46164144100.48297
[2025-11-20 14:21:42] 2025-11-20 19:21:10,301 | INFO     | sum of deviations: 502562676166.92804
[2025-11-20 14:21:42] 2025-11-20 19:21:10,301 | INFO     | mean x: 1763650271.5056603
[2025-11-20 14:21:42] 2025-11-20 19:21:10,301 | INFO     | mean y: 3458283.690566038
[2025-11-20 14:21:42] 2025-11-20 19:21:10,301 | INFO     | intersect: -19196395142.404705
[2025-11-20 14:21:42] 2025-11-20 19:21:10,302 | INFO     | chi2: 2.8233821086469417
[2025-11-20 14:21:42] 2025-11-20 19:21:10,302 | INFO     | current chi2=2.8233821086469417 (change=3.681941825033826 %)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,302 | INFO     | left removable region: 20
[2025-11-20 14:21:42] 2025-11-20 19:21:10,302 | INFO     | sum of square deviations: 40891254720.98224
[2025-11-20 14:21:42] 2025-11-20 19:21:10,308 | INFO     | sum of deviations: 647906371083.8119
[2025-11-20 14:21:42] 2025-11-20 19:21:10,308 | INFO     | mean x: 1763650241.005894
[2025-11-20 14:21:42] 2025-11-20 19:21:10,308 | INFO     | mean y: 3493964.0628683693
[2025-11-20 14:21:42] 2025-11-20 19:21:10,308 | INFO     | intersect: -27940872999.19599
[2025-11-20 14:21:42] 2025-11-20 19:21:10,309 | INFO     | chi2: 0.08184910458396766
[2025-11-20 14:21:42] 2025-11-20 19:21:10,309 | INFO     | current memory leak: 15.84 B/s (using 509 data points, chi2=0.08)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,309 | INFO     | could have reported an average CPU frequency of 2420 MHz (22 samples)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,309 | INFO     | ..............................
[2025-11-20 14:21:42] 2025-11-20 19:21:10,309 | INFO     | . Timing measurements:
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | . get job = 0 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | . initial setup = 2 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | . payload setup = 8 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | . stage-in = 0 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | . payload execution = 32932 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | . stage-out = 3 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | . log creation = 0 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,310 | INFO     | ..............................
[2025-11-20 14:21:42] 2025-11-20 19:21:10,392 | INFO     | 
[2025-11-20 14:21:42] 2025-11-20 19:21:10,392 | INFO     | job summary report
[2025-11-20 14:21:42] 2025-11-20 19:21:10,392 | INFO     | --------------------------------------------------
[2025-11-20 14:21:42] 2025-11-20 19:21:10,392 | INFO     | PanDA job id: 6893833783
[2025-11-20 14:21:42] 2025-11-20 19:21:10,392 | INFO     | task id: 47523449
[2025-11-20 14:21:42] 2025-11-20 19:21:10,392 | INFO     | errors: (none)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,393 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 14:21:42] 2025-11-20 19:21:10,393 | INFO     | pilot state: finished 
[2025-11-20 14:21:42] 2025-11-20 19:21:10,393 | INFO     | transexitcode: 0
[2025-11-20 14:21:42] 2025-11-20 19:21:10,393 | INFO     | exeerrorcode: 0
[2025-11-20 14:21:42] 2025-11-20 19:21:10,393 | INFO     | exeerrordiag: 
[2025-11-20 14:21:42] 2025-11-20 19:21:10,393 | INFO     | exitcode: 0
[2025-11-20 14:21:42] 2025-11-20 19:21:10,394 | INFO     | exitmsg: OK
[2025-11-20 14:21:42] 2025-11-20 19:21:10,394 | INFO     | cpuconsumptiontime: 318658 s
[2025-11-20 14:21:42] 2025-11-20 19:21:10,394 | INFO     | nevents: 1000
[2025-11-20 14:21:42] 2025-11-20 19:21:10,394 | INFO     | neventsw: 0
[2025-11-20 14:21:42] 2025-11-20 19:21:10,394 | INFO     | pid: 1679
[2025-11-20 14:21:42] 2025-11-20 19:21:10,394 | INFO     | pgrp: 1679
[2025-11-20 14:21:42] 2025-11-20 19:21:10,394 | INFO     | corecount: 12
[2025-11-20 14:21:42] 2025-11-20 19:21:10,395 | INFO     | event service: False
[2025-11-20 14:21:42] 2025-11-20 19:21:10,395 | INFO     | sizes: {0: 2297201, 1: 2297201, 6: 2297491, 11: 2297519, 32945: 2338225, 32949: 2348815, 32951: 2348999, 32957: 2349245}
[2025-11-20 14:21:42] 2025-11-20 19:21:10,395 | INFO     | --------------------------------------------------
[2025-11-20 14:21:42] 2025-11-20 19:21:10,395 | INFO     | 
[2025-11-20 14:21:42] 2025-11-20 19:21:10,395 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 14:21:42] 2025-11-20 19:21:10,505 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,505 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,505 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,506 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,506 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,506 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,506 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,506 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,506 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,507 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,507 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,507 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,507 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,507 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,507 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,508 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,508 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 14:21:42] 2025-11-20 19:21:10,508 | INFO     | job 6893833783 has completed (purged errors)
[2025-11-20 14:21:42] 2025-11-20 19:21:10,509 | INFO     | overall cleanup function is called
[2025-11-20 14:21:42] 2025-11-20 19:21:11,525 | INFO     | --- collectZombieJob: --- 10, [1679]
[2025-11-20 14:21:42] 2025-11-20 19:21:11,526 | INFO     | zombie collector waiting for pid 1679
[2025-11-20 14:21:42] 2025-11-20 19:21:11,526 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 14:21:42] 2025-11-20 19:21:11,526 | INFO     | collected zombie processes
[2025-11-20 14:21:42] 2025-11-20 19:21:11,526 | INFO     | will attempt to kill all subprocesses of pid=1679
[2025-11-20 14:21:42] 2025-11-20 19:21:11,618 | INFO     | process IDs to be killed: [1679] (in reverse order)
[2025-11-20 14:21:42] 2025-11-20 19:21:11,671 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 14:21:42] 2025-11-20 19:21:11,672 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 14:21:42] 2025-11-20 19:21:11,674 | INFO     | did not find any defunct processes belonging to 1679
[2025-11-20 14:21:42] 2025-11-20 19:21:11,677 | INFO     | did not find any defunct processes belonging to 1679
[2025-11-20 14:21:42] 2025-11-20 19:21:11,679 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 14:21:42] 2025-11-20 19:21:11,679 | INFO     | ready for new job
[2025-11-20 14:21:42] 2025-11-20 19:21:11,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 14:21:42] 2025-11-20 19:21:11,682 | INFO     | ***************************************
[2025-11-20 14:21:42] 2025-11-20 19:21:11,682 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 14:21:42] 2025-11-20 19:21:11,682 | INFO     | ***************************************
[2025-11-20 14:21:42] 2025-11-20 19:21:11,682 | INFO     | 
[2025-11-20 14:21:42] 2025-11-20 19:21:11,683 | INFO     | architecture information:
[2025-11-20 14:21:42] 2025-11-20 19:21:11,683 | INFO     | executing command: cat /etc/os-release
[2025-11-20 14:21:42] 2025-11-20 19:21:11,700 | INFO     | cat /etc/os-release:
[2025-11-20 14:21:42] NAME="CentOS Linux"
[2025-11-20 14:21:42] VERSION="7 (Core)"
[2025-11-20 14:21:42] ID="centos"
[2025-11-20 14:21:42] ID_LIKE="rhel fedora"
[2025-11-20 14:21:42] VERSION_ID="7"
[2025-11-20 14:21:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:21:42] ANSI_COLOR="0;31"
[2025-11-20 14:21:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:21:42] HOME_URL="https://www.centos.org/"
[2025-11-20 14:21:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:21:42] 
[2025-11-20 14:21:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:21:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:21:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:21:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:21:42] 
[2025-11-20 14:21:42] 2025-11-20 19:21:11,700 | INFO     | ***************************************
[2025-11-20 14:21:42] 2025-11-20 19:21:12,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 14:21:42] 2025-11-20 19:21:12,223 | INFO     | sufficient remaining disk space (28258074624 B)
[2025-11-20 14:21:42] 2025-11-20 19:21:12,223 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:21:42] 2025-11-20 19:21:12,224 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:21:42] 2025-11-20 19:21:12,224 | INFO     | update_server=False
[2025-11-20 14:21:42] 2025-11-20 19:21:12,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:21:42] 2025-11-20 19:21:12,224 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:21:42] 2025-11-20 19:21:12,225 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:21:42] 2025-11-20 19:21:12,225 | INFO     | aborting loop
[2025-11-20 14:21:42] 2025-11-20 19:21:12,289 | INFO     | all payload control threads have been joined
[2025-11-20 14:21:42] 2025-11-20 19:21:12,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:21:42] 2025-11-20 19:21:12,480 | INFO     | all job control threads have been joined
[2025-11-20 14:21:42] 2025-11-20 19:21:12,540 | INFO     | all data control threads have been joined
[2025-11-20 14:21:42] 2025-11-20 19:21:13,227 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,229 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,231 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,294 | INFO     | [payload] control thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,404 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,483 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,485 | INFO     | [job] control thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,546 | INFO     | [data] control thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,551 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:13,760 | INFO     | [job] validate thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:14,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:21:42] 2025-11-20 19:21:14,239 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:14,286 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:14,456 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:14,753 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:18,213 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:23,237 | INFO     | job.realtimelogging is not enabled
[2025-11-20 14:21:42] 2025-11-20 19:21:24,242 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:21:42] 2025-11-20 19:21:26,844 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:21:42] 2025-11-20 19:21:28,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140516656912192)>', '<ExcThread(monitor, started 140515618055936)>']
[2025-11-20 14:21:42] 2025-11-20 19:21:33,680 | INFO     | all workflow threads have been joined
[2025-11-20 14:21:42] 2025-11-20 19:21:33,680 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:21:42] 2025-11-20 19:21:33,680 | INFO     | traces error code: 0
[2025-11-20 14:21:42] 2025-11-20 19:21:33,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:21:42] 2025-11-20 19:21:42,320 | INFO     | PID=27703 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 14:21:42] 2025-11-20 19:21:42,320 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:21:42] 2025-11-20 19:21:42,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:21:42] 2025-11-20 19:21:42,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:21:42] 2025-11-20 19:21:42,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:21:42] 2025-11-20 19:21:42,320 | INFO     | [monitor] control thread has ended
[2025-11-20 14:21:42] 2025-11-20 19:21:42,402 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:21:42] 2025-11-20 19:21:42,406 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:21:42] 2025-11-20 19:21:42,410 [wrapper] pilotpid: 27703
[2025-11-20 14:21:42] 2025-11-20 19:21:42,413 [wrapper] Pilot exit status: 0
[2025-11-20 14:21:42] 2025-11-20 19:21:42,428 [wrapper] pandaids: 6893833783
[2025-11-20 14:21:42] 2025-11-20 19:21:42,469 [wrapper] cleanup supervisor_pilot 23579 27704
[2025-11-20 14:21:42] 2025-11-20 19:21:42,474 [wrapper] Test setup, not cleaning
[2025-11-20 14:21:42] 2025-11-20 19:21:42,478 [wrapper] apfmon messages muted
[2025-11-20 14:21:42] 2025-11-20 19:21:42,482 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:21:42] 2025-11-20 19:21:42,486 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:21:42]  *** Error codes and diagnostics ***
[2025-11-20 14:21:42]     "exeErrorCode": 0,
[2025-11-20 14:21:42]     "exeErrorDiag": "",
[2025-11-20 14:21:42]     "pilotErrorCode": 0,
[2025-11-20 14:21:42]     "pilotErrorDiag": "",
[2025-11-20 14:21:42]  *** Listing of results directory ***
[2025-11-20 14:21:42] total 1309000
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:08 queuedata.json
[2025-11-20 14:21:42] -rwx------ 1 boincer umatlas     36292 Nov 20 05:09 runpilot2-wrapper.sh
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:21:42] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:11 run_atlas
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:11 job.xml
[2025-11-20 14:21:42] -rw-r--r-- 2 boincer umatlas 408744460 Nov 20 05:11 EVNT.47493127._000045.pool.root.1
[2025-11-20 14:21:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-20 14:21:42] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:11 shared
[2025-11-20 14:21:42] -rw-r--r-- 2 boincer umatlas    590101 Nov 20 05:11 input.tar.gz
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:11 boinc_lockfile
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas      2781 Nov 20 05:11 pandaJob.out
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas        57 Nov 20 05:11 setup.sh.local
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas    989435 Nov 20 05:11 agis_schedconf.cvmfs.json
[2025-11-20 14:21:42] drwx------ 5 boincer umatlas      4096 Nov 20 05:11 pilot3
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas       533 Nov 20 14:09 boinc_task_state.xml
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas      5955 Nov 20 14:19 init_data.xml
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas 913966072 Nov 20 14:20 HITS.47523449._000441.pool.root.1
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas        95 Nov 20 14:20 pilot_heartbeat.json
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas      1062 Nov 20 14:20 memory_monitor_summary.json
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas   1526164 Nov 20 14:21 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas   2271351 Nov 20 14:21 log.47523449._000441.job.log.tgz.1
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas      8657 Nov 20 14:21 heartbeat.json
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas        29 Nov 20 14:21 wrapper_checkpoint.txt
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 14:21 boinc_mmap_file
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas       745 Nov 20 14:21 pilotlog.txt
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas   4619597 Nov 20 14:21 log.47523449._000441.job.log.1
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas       353 Nov 20 14:21 output.list
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas       620 Nov 20 14:21 runtime_log
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas   6912000 Nov 20 14:21 result.tar.gz
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas       670 Nov 20 14:21 ShsKDmgmGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeBGKDmyRIMDn.diag
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas      9345 Nov 20 14:21 runtime_log.err
[2025-11-20 14:21:42] -rw-r--r-- 1 boincer umatlas     21300 Nov 20 14:21 stderr.txt
[2025-11-20 14:21:42] HITS file was successfully produced:
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas 913966072 Nov 20 14:20 shared/HITS.pool.root.1
[2025-11-20 14:21:42]  *** Contents of shared directory: ***
[2025-11-20 14:21:42] total 1299068
[2025-11-20 14:21:42] -rw-r--r-- 2 boincer umatlas 408744460 Nov 20 05:11 ATLAS.root_0
[2025-11-20 14:21:42] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:11 start_atlas.sh
[2025-11-20 14:21:42] -rw-r--r-- 2 boincer umatlas    590101 Nov 20 05:11 input.tar.gz
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas 913966072 Nov 20 14:20 HITS.pool.root.1
[2025-11-20 14:21:42] -rw------- 1 boincer umatlas   6912000 Nov 20 14:21 result.tar.gz
14:21:44 (24017): run_atlas exited; CPU time 307122.837138
14:21:44 (24017): called boinc_finish(0)

</stderr_txt>
]]>

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