Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:09:33 (28635): wrapper (7.7.26015): starting
05:09:33 (28635): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:09:33] Arguments: --nthreads 8
[2025-11-20 05:09:33] Threads: 8
[2025-11-20 05:09:33] Checking for CVMFS
[2025-11-20 05:09:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:09:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:09:33] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:09:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:09:33] 2.11.2.0 2989 64523 82824 153076 0 1 16415877 20275201 1 130560 0 18030320 99.874 3458637 31806 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:09:33] CVMFS is ok
[2025-11-20 05:09:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:09:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:09:33] Further information can be found at the LHC@home message board.
[2025-11-20 05:09:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:09:33] Checking for apptainer binary...
[2025-11-20 05:09:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:09:33] Running /usr/bin/apptainer --version
[2025-11-20 05:09:33] apptainer version 1.3.2-1.el7
[2025-11-20 05:09:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:09:35] c-204-24.aglt2.org
[2025-11-20 05:09:35] apptainer works
[2025-11-20 05:09:35] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:09:35] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:09:35] Starting ATLAS job with PandaID=6893831780
[2025-11-20 05:09:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:51:13]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:51:13] 2025-11-20 22:50:29,120 | INFO     | extracted standard info from prmon json
[2025-11-20 17:51:13] 2025-11-20 22:50:29,120 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 17:51:13] 2025-11-20 22:50:29,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 17:51:13] 2025-11-20 22:50:29,134 | INFO     | fitting pss+swap vs Time
[2025-11-20 17:51:13] 2025-11-20 22:50:29,135 | INFO     | sum of square deviations: 129772857594.95589
[2025-11-20 17:51:13] 2025-11-20 22:50:29,146 | INFO     | sum of deviations: 863344021669.1339
[2025-11-20 17:51:13] 2025-11-20 22:50:29,146 | INFO     | mean x: 1763656209.0735295
[2025-11-20 17:51:13] 2025-11-20 22:50:29,147 | INFO     | mean y: 2867763.415775401
[2025-11-20 17:51:13] 2025-11-20 22:50:29,147 | INFO     | intersect: -11730264053.221228
[2025-11-20 17:51:13] 2025-11-20 22:50:29,148 | INFO     | chi2: 6.490575115254325
[2025-11-20 17:51:13] 2025-11-20 22:50:29,149 | INFO     | sum of square deviations: 127187953923.3001
[2025-11-20 17:51:13] 2025-11-20 22:50:29,160 | INFO     | sum of deviations: 1106499417605.3113
[2025-11-20 17:51:13] 2025-11-20 22:50:29,160 | INFO     | mean x: 1763656056.577389
[2025-11-20 17:51:13] 2025-11-20 22:50:29,160 | INFO     | mean y: 2882102.2207267834
[2025-11-20 17:51:13] 2025-11-20 22:50:29,160 | INFO     | intersect: -15340429424.244991
[2025-11-20 17:51:13] 2025-11-20 22:50:29,161 | INFO     | chi2: 3.441296557783683
[2025-11-20 17:51:13] 2025-11-20 22:50:29,161 | INFO     | current chi2=3.441296557783683 (change=46.98009811648501 %)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,162 | INFO     | sum of square deviations: 124637609039.12143
[2025-11-20 17:51:13] 2025-11-20 22:50:29,173 | INFO     | sum of deviations: 1229988371479.5781
[2025-11-20 17:51:13] 2025-11-20 22:50:29,173 | INFO     | mean x: 1763655904.0813007
[2025-11-20 17:51:13] 2025-11-20 22:50:29,174 | INFO     | mean y: 2889484.940379404
[2025-11-20 17:51:13] 2025-11-20 22:50:29,174 | INFO     | intersect: -17401778897.54124
[2025-11-20 17:51:13] 2025-11-20 22:50:29,175 | INFO     | chi2: 2.5536510649840887
[2025-11-20 17:51:13] 2025-11-20 22:50:29,175 | INFO     | current chi2=2.5536510649840887 (change=25.793926152393844 %)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,176 | INFO     | sum of square deviations: 122121500588.25655
[2025-11-20 17:51:13] 2025-11-20 22:50:29,186 | INFO     | sum of deviations: 1238112839443.304
[2025-11-20 17:51:13] 2025-11-20 22:50:29,187 | INFO     | mean x: 1763655751.5825374
[2025-11-20 17:51:13] 2025-11-20 22:50:29,187 | INFO     | mean y: 2889970.664392906
[2025-11-20 17:51:13] 2025-11-20 22:50:29,187 | INFO     | intersect: -17877702880.50427
[2025-11-20 17:51:13] 2025-11-20 22:50:29,188 | INFO     | chi2: 2.467416513181125
[2025-11-20 17:51:13] 2025-11-20 22:50:29,188 | INFO     | current chi2=2.467416513181125 (change=3.3769120999113786 %)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,188 | INFO     | right removable region: 732
[2025-11-20 17:51:13] 2025-11-20 22:50:29,189 | INFO     | sum of square deviations: 127187692233.30014
[2025-11-20 17:51:13] 2025-11-20 22:50:29,200 | INFO     | sum of deviations: 659592401186.315
[2025-11-20 17:51:13] 2025-11-20 22:50:29,200 | INFO     | mean x: 1763656361.577389
[2025-11-20 17:51:13] 2025-11-20 22:50:29,200 | INFO     | mean y: 2879765.0901749665
[2025-11-20 17:51:13] 2025-11-20 22:50:29,201 | INFO     | intersect: -9143400932.153086
[2025-11-20 17:51:13] 2025-11-20 22:50:29,201 | INFO     | chi2: 4.343019467214261
[2025-11-20 17:51:13] 2025-11-20 22:50:29,202 | INFO     | current chi2=4.343019467214261 (change=33.08729365126398 %)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,202 | INFO     | sum of square deviations: 124637221262.59785
[2025-11-20 17:51:13] 2025-11-20 22:50:29,214 | INFO     | sum of deviations: 596502904310.8776
[2025-11-20 17:51:13] 2025-11-20 22:50:29,214 | INFO     | mean x: 1763656514.0772357
[2025-11-20 17:51:13] 2025-11-20 22:50:29,214 | INFO     | mean y: 2883536.1951219514
[2025-11-20 17:51:13] 2025-11-20 22:50:29,214 | INFO     | intersect: -8437823198.090599
[2025-11-20 17:51:13] 2025-11-20 22:50:29,215 | INFO     | chi2: 4.228187155013675
[2025-11-20 17:51:13] 2025-11-20 22:50:29,215 | INFO     | current chi2=4.228187155013675 (change=2.6440662554580463 %)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,215 | INFO     | left removable region: 20
[2025-11-20 17:51:13] 2025-11-20 22:50:29,216 | INFO     | sum of square deviations: 111923215399.77394
[2025-11-20 17:51:13] 2025-11-20 22:50:29,226 | INFO     | sum of deviations: 884275399433.4181
[2025-11-20 17:51:13] 2025-11-20 22:50:29,226 | INFO     | mean x: 1763656331.085674
[2025-11-20 17:51:13] 2025-11-20 22:50:29,226 | INFO     | mean y: 2911586.6488764044
[2025-11-20 17:51:13] 2025-11-20 22:50:29,227 | INFO     | intersect: -13931265528.112705
[2025-11-20 17:51:13] 2025-11-20 22:50:29,227 | INFO     | chi2: 0.13056992231551065
[2025-11-20 17:51:13] 2025-11-20 22:50:29,228 | INFO     | current memory leak: 7.90 B/s (using 712 data points, chi2=0.13)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,228 | INFO     | could have reported an average CPU frequency of 2163 MHz (28 samples)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,228 | INFO     | ..............................
[2025-11-20 17:51:13] 2025-11-20 22:50:29,228 | INFO     | . Timing measurements:
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | . get job = 0 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | . initial setup = 2 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | . payload setup = 9 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | . stage-in = 0 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | . payload execution = 45594 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | . stage-out = 3 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | . log creation = 0 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,229 | INFO     | ..............................
[2025-11-20 17:51:13] 2025-11-20 22:50:29,322 | INFO     | 
[2025-11-20 17:51:13] 2025-11-20 22:50:29,322 | INFO     | job summary report
[2025-11-20 17:51:13] 2025-11-20 22:50:29,322 | INFO     | --------------------------------------------------
[2025-11-20 17:51:13] 2025-11-20 22:50:29,322 | INFO     | PanDA job id: 6893831780
[2025-11-20 17:51:13] 2025-11-20 22:50:29,322 | INFO     | task id: 47523449
[2025-11-20 17:51:13] 2025-11-20 22:50:29,322 | INFO     | errors: (none)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,322 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | pilot state: finished 
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | transexitcode: 0
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | exeerrorcode: 0
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | exeerrordiag: 
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | exitcode: 0
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | exitmsg: OK
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | cpuconsumptiontime: 352342 s
[2025-11-20 17:51:13] 2025-11-20 22:50:29,323 | INFO     | nevents: 1000
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | neventsw: 0
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | pid: 7618
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | pgrp: 7618
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | corecount: 8
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | event service: False
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | sizes: {0: 2296980, 1: 2297235, 7: 2297497, 12: 2297525, 45607: 2343672, 45612: 2354446, 45618: 2354636}
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | --------------------------------------------------
[2025-11-20 17:51:13] 2025-11-20 22:50:29,324 | INFO     | 
[2025-11-20 17:51:13] 2025-11-20 22:50:29,325 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 17:51:13] 2025-11-20 22:50:29,354 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,354 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,354 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,355 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,355 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,355 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,355 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,356 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,356 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,356 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,356 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,356 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,356 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,357 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,357 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,358 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:51:13] 2025-11-20 22:50:29,358 | INFO     | job 6893831780 has completed (purged errors)
[2025-11-20 17:51:13] 2025-11-20 22:50:29,358 | INFO     | overall cleanup function is called
[2025-11-20 17:51:13] 2025-11-20 22:50:30,373 | INFO     | --- collectZombieJob: --- 10, [7618]
[2025-11-20 17:51:13] 2025-11-20 22:50:30,373 | INFO     | zombie collector waiting for pid 7618
[2025-11-20 17:51:13] 2025-11-20 22:50:30,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:51:13] 2025-11-20 22:50:30,381 | INFO     | collected zombie processes
[2025-11-20 17:51:13] 2025-11-20 22:50:30,381 | INFO     | will attempt to kill all subprocesses of pid=7618
[2025-11-20 17:51:13] 2025-11-20 22:50:30,471 | INFO     | process IDs to be killed: [7618] (in reverse order)
[2025-11-20 17:51:13] 2025-11-20 22:50:30,534 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:51:13] 2025-11-20 22:50:30,534 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:51:13] 2025-11-20 22:50:30,538 | INFO     | did not find any defunct processes belonging to 7618
[2025-11-20 17:51:13] 2025-11-20 22:50:30,541 | INFO     | did not find any defunct processes belonging to 7618
[2025-11-20 17:51:13] 2025-11-20 22:50:30,544 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:51:13] 2025-11-20 22:50:30,544 | INFO     | ready for new job
[2025-11-20 17:51:13] 2025-11-20 22:50:30,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:51:13] 2025-11-20 22:50:30,548 | INFO     | ***************************************
[2025-11-20 17:51:13] 2025-11-20 22:50:30,548 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:51:13] 2025-11-20 22:50:30,548 | INFO     | ***************************************
[2025-11-20 17:51:13] 2025-11-20 22:50:30,548 | INFO     | 
[2025-11-20 17:51:13] 2025-11-20 22:50:30,549 | INFO     | architecture information:
[2025-11-20 17:51:13] 2025-11-20 22:50:30,550 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:51:13] 2025-11-20 22:50:30,568 | INFO     | cat /etc/os-release:
[2025-11-20 17:51:13] NAME="CentOS Linux"
[2025-11-20 17:51:13] VERSION="7 (Core)"
[2025-11-20 17:51:13] ID="centos"
[2025-11-20 17:51:13] ID_LIKE="rhel fedora"
[2025-11-20 17:51:13] VERSION_ID="7"
[2025-11-20 17:51:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:51:13] ANSI_COLOR="0;31"
[2025-11-20 17:51:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:51:13] HOME_URL="https://www.centos.org/"
[2025-11-20 17:51:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:51:13] 
[2025-11-20 17:51:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:51:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:51:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:51:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:51:13] 
[2025-11-20 17:51:13] 2025-11-20 22:50:30,569 | INFO     | ***************************************
[2025-11-20 17:51:13] 2025-11-20 22:50:31,072 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 17:51:13] 2025-11-20 22:50:31,093 | INFO     | sufficient remaining disk space (17584619520 B)
[2025-11-20 17:51:13] 2025-11-20 22:50:31,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:51:13] 2025-11-20 22:50:31,094 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:51:13] 2025-11-20 22:50:31,094 | INFO     | update_server=False
[2025-11-20 17:51:13] 2025-11-20 22:50:31,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:51:13] 2025-11-20 22:50:31,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:51:13] 2025-11-20 22:50:31,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:51:13] 2025-11-20 22:50:31,095 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:51:13] 2025-11-20 22:50:31,096 | INFO     | aborting loop
[2025-11-20 17:51:13] 2025-11-20 22:50:31,257 | INFO     | all payload control threads have been joined
[2025-11-20 17:51:13] 2025-11-20 22:50:31,852 | INFO     | all data control threads have been joined
[2025-11-20 17:51:13] 2025-11-20 22:50:31,965 | INFO     | all job control threads have been joined
[2025-11-20 17:51:13] 2025-11-20 22:50:32,100 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,101 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,101 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,116 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,155 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,262 | INFO     | [payload] control thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,406 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,441 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,858 | INFO     | [data] control thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,971 | INFO     | [job] control thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:32,993 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:33,007 | INFO     | [job] validate thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:33,082 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:33,100 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:33,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:51:13] 2025-11-20 22:50:33,555 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:50:37,309 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:51:13] 2025-11-20 22:51:01,979 | INFO     | PID=32414 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 17:51:13] 2025-11-20 22:51:01,980 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:51:13] 2025-11-20 22:51:01,980 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:51:13] 2025-11-20 22:51:01,980 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:51:13] 2025-11-20 22:51:08,237 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:51:13] 2025-11-20 22:51:08,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140388540634944)>', '<ExcThread(monitor, started 140388102821632)>']
[2025-11-20 17:51:13] 2025-11-20 22:51:09,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:51:13] 2025-11-20 22:51:09,017 | INFO     | [monitor] control thread has ended
[2025-11-20 17:51:13] 2025-11-20 22:51:13,286 | INFO     | all workflow threads have been joined
[2025-11-20 17:51:13] 2025-11-20 22:51:13,286 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:51:13] 2025-11-20 22:51:13,293 | INFO     | traces error code: 0
[2025-11-20 17:51:13] 2025-11-20 22:51:13,294 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:51:13] 2025-11-20 22:51:13,425 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:51:13] 2025-11-20 22:51:13,430 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:51:13] 2025-11-20 22:51:13,435 [wrapper] pilotpid: 32414
[2025-11-20 17:51:13] 2025-11-20 22:51:13,440 [wrapper] Pilot exit status: 0
[2025-11-20 17:51:13] 2025-11-20 22:51:13,458 [wrapper] pandaids: 6893831780
[2025-11-20 17:51:13] 2025-11-20 22:51:13,510 [wrapper] cleanup supervisor_pilot 14853 32415
[2025-11-20 17:51:13] 2025-11-20 22:51:13,515 [wrapper] Test setup, not cleaning
[2025-11-20 17:51:13] 2025-11-20 22:51:13,519 [wrapper] apfmon messages muted
[2025-11-20 17:51:13] 2025-11-20 22:51:13,524 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:51:13] 2025-11-20 22:51:13,529 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:51:13]  *** Error codes and diagnostics ***
[2025-11-20 17:51:13]     "exeErrorCode": 0,
[2025-11-20 17:51:13]     "exeErrorDiag": "",
[2025-11-20 17:51:13]     "pilotErrorCode": 0,
[2025-11-20 17:51:13]     "pilotErrorDiag": "",
[2025-11-20 17:51:13]  *** Listing of results directory ***
[2025-11-20 17:51:13] total 1324640
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:08 queuedata.json
[2025-11-20 17:51:13] -rwx------ 1 boincer umatlas     36292 Nov 20 05:08 runpilot2-wrapper.sh
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:51:13] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:09 run_atlas
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:09 job.xml
[2025-11-20 17:51:13] -rw-r--r-- 2 boincer umatlas 410910998 Nov 20 05:09 EVNT.47493127._000020.pool.root.1
[2025-11-20 17:51:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:09 start_atlas.sh
[2025-11-20 17:51:13] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:09 shared
[2025-11-20 17:51:13] -rw-r--r-- 2 boincer umatlas    590101 Nov 20 05:09 input.tar.gz
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:09 boinc_lockfile
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas      2784 Nov 20 05:09 pandaJob.out
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas        57 Nov 20 05:09 setup.sh.local
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas    989435 Nov 20 05:09 agis_schedconf.cvmfs.json
[2025-11-20 17:51:13] drwx------ 5 boincer umatlas      4096 Nov 20 05:09 pilot3
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas       532 Nov 20 17:38 boinc_task_state.xml
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas      5912 Nov 20 17:46 init_data.xml
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas 925022003 Nov 20 17:49 HITS.47523449._000197.pool.root.1
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas      1062 Nov 20 17:50 memory_monitor_summary.json
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas   1526164 Nov 20 17:50 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas   1993955 Nov 20 17:50 log.47523449._000197.job.log.tgz.1
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas      8673 Nov 20 17:50 heartbeat.json
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas        95 Nov 20 17:51 pilot_heartbeat.json
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 17:51 boinc_mmap_file
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas        29 Nov 20 17:51 wrapper_checkpoint.txt
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas      4746 Nov 20 17:51 pilotlog.txt
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas   6292606 Nov 20 17:51 log.47523449._000197.job.log.1
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas       353 Nov 20 17:51 output.list
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas       620 Nov 20 17:51 runtime_log
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas   8304640 Nov 20 17:51 result.tar.gz
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas       668 Nov 20 17:51 TEIMDmklGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYAGKDmR3q3Oo.diag
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas      9343 Nov 20 17:51 runtime_log.err
[2025-11-20 17:51:13] -rw-r--r-- 1 boincer umatlas     21070 Nov 20 17:51 stderr.txt
[2025-11-20 17:51:13] HITS file was successfully produced:
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas 925022003 Nov 20 17:49 shared/HITS.pool.root.1
[2025-11-20 17:51:13]  *** Contents of shared directory: ***
[2025-11-20 17:51:13] total 1313340
[2025-11-20 17:51:13] -rw-r--r-- 2 boincer umatlas 410910998 Nov 20 05:09 ATLAS.root_0
[2025-11-20 17:51:13] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:09 start_atlas.sh
[2025-11-20 17:51:13] -rw-r--r-- 2 boincer umatlas    590101 Nov 20 05:09 input.tar.gz
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas 925022003 Nov 20 17:49 HITS.pool.root.1
[2025-11-20 17:51:13] -rw------- 1 boincer umatlas   8304640 Nov 20 17:51 result.tar.gz
17:51:15 (28635): run_atlas exited; CPU time 348632.566605
17:51:15 (28635): called boinc_finish(0)

</stderr_txt>
]]>

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