Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:07:17 (19537): wrapper (7.7.26015): starting
05:07:17 (19537): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 05:07:17] Arguments: --nthreads 8
[2025-11-20 05:07:17] Threads: 8
[2025-11-20 05:07:17] Checking for CVMFS
[2025-11-20 05:07:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:07:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:07:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:07:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:07:18] 2.11.2.0 2756 64520 93416 153076 3 1 16431452 20275201 1 130560 0 19310991 99.897 3221019 32303 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 05:07:18] CVMFS is ok
[2025-11-20 05:07:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:07:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:07:18] Further information can be found at the LHC@home message board.
[2025-11-20 05:07:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:07:18] Checking for apptainer binary...
[2025-11-20 05:07:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:07:18] Running /usr/bin/apptainer --version
[2025-11-20 05:07:18] apptainer version 1.3.2-1.el7
[2025-11-20 05:07:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:07:20] c-115-14.aglt2.org
[2025-11-20 05:07:20] apptainer works
[2025-11-20 05:07:20] Set ATHENA_PROC_NUMBER=8
[2025-11-20 05:07:20] Set ATHENA_CORE_NUMBER=8
[2025-11-20 05:07:20] Starting ATLAS job with PandaID=6893827940
[2025-11-20 05:07:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 16:25:51]  *** The last 200 lines of the pilot log: ***
[2025-11-20 16:25:51] 2025-11-20 21:24:45,741 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 16:25:51] 2025-11-20 21:24:45,752 | INFO     | fitting pss+swap vs Time
[2025-11-20 16:25:51] 2025-11-20 21:24:45,753 | INFO     | sum of square deviations: 91601609174.2463
[2025-11-20 16:25:51] 2025-11-20 21:24:45,761 | INFO     | sum of deviations: 624339044541.9965
[2025-11-20 16:25:51] 2025-11-20 21:24:45,761 | INFO     | mean x: 1763653571.0750751
[2025-11-20 16:25:51] 2025-11-20 21:24:45,761 | INFO     | mean y: 3236581.06006006
[2025-11-20 16:25:51] 2025-11-20 21:24:45,761 | INFO     | intersect: -12017488768.573542
[2025-11-20 16:25:51] 2025-11-20 21:24:45,762 | INFO     | chi2: 5.928402454992181
[2025-11-20 16:25:51] 2025-11-20 21:24:45,763 | INFO     | sum of square deviations: 89554087595.08037
[2025-11-20 16:25:51] 2025-11-20 21:24:45,772 | INFO     | sum of deviations: 859568981599.5564
[2025-11-20 16:25:51] 2025-11-20 21:24:45,773 | INFO     | mean x: 1763653418.579425
[2025-11-20 16:25:51] 2025-11-20 21:24:45,773 | INFO     | mean y: 3254086.570347958
[2025-11-20 16:25:51] 2025-11-20 21:24:45,773 | INFO     | intersect: -16924859566.459295
[2025-11-20 16:25:51] 2025-11-20 21:24:45,773 | INFO     | chi2: 3.0896047983192116
[2025-11-20 16:25:51] 2025-11-20 21:24:45,774 | INFO     | current chi2=3.0896047983192116 (change=47.88469875695565 %)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,774 | INFO     | sum of square deviations: 87537310778.38869
[2025-11-20 16:25:51] 2025-11-20 21:24:45,782 | INFO     | sum of deviations: 973643037193.1221
[2025-11-20 16:25:51] 2025-11-20 21:24:45,782 | INFO     | mean x: 1763653266.0838416
[2025-11-20 16:25:51] 2025-11-20 21:24:45,783 | INFO     | mean y: 3262703.6341463416
[2025-11-20 16:25:51] 2025-11-20 21:24:45,783 | INFO     | intersect: -19613158080.557655
[2025-11-20 16:25:51] 2025-11-20 21:24:45,783 | INFO     | chi2: 2.3119508677492533
[2025-11-20 16:25:51] 2025-11-20 21:24:45,784 | INFO     | current chi2=2.3119508677492533 (change=25.170013038334645 %)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,784 | INFO     | sum of square deviations: 85550966496.01828
[2025-11-20 16:25:51] 2025-11-20 21:24:45,792 | INFO     | sum of deviations: 981467721028.0626
[2025-11-20 16:25:51] 2025-11-20 21:24:45,792 | INFO     | mean x: 1763653113.5852535
[2025-11-20 16:25:51] 2025-11-20 21:24:45,793 | INFO     | mean y: 3263295.88172043
[2025-11-20 16:25:51] 2025-11-20 21:24:45,793 | INFO     | intersect: -20229922522.715996
[2025-11-20 16:25:51] 2025-11-20 21:24:45,793 | INFO     | chi2: 2.2437129873727986
[2025-11-20 16:25:51] 2025-11-20 21:24:45,794 | INFO     | current chi2=2.2437129873727986 (change=2.9515281370527635 %)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,794 | INFO     | right removable region: 650
[2025-11-20 16:25:51] 2025-11-20 21:24:45,794 | INFO     | sum of square deviations: 89553853965.08025
[2025-11-20 16:25:51] 2025-11-20 21:24:45,803 | INFO     | sum of deviations: 441575534097.21765
[2025-11-20 16:25:51] 2025-11-20 21:24:45,803 | INFO     | mean x: 1763653723.579425
[2025-11-20 16:25:51] 2025-11-20 21:24:45,803 | INFO     | mean y: 3250157.3101361576
[2025-11-20 16:25:51] 2025-11-20 21:24:45,803 | INFO     | intersect: -8693040403.851011
[2025-11-20 16:25:51] 2025-11-20 21:24:45,804 | INFO     | chi2: 3.8591974877357083
[2025-11-20 16:25:51] 2025-11-20 21:24:45,804 | INFO     | current chi2=3.8591974877357083 (change=34.90324725700833 %)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,805 | INFO     | sum of square deviations: 87536883839.55487
[2025-11-20 16:25:51] 2025-11-20 21:24:45,813 | INFO     | sum of deviations: 398429462838.28076
[2025-11-20 16:25:51] 2025-11-20 21:24:45,813 | INFO     | mean x: 1763653876.082317
[2025-11-20 16:25:51] 2025-11-20 21:24:45,813 | INFO     | mean y: 3253419.4207317075
[2025-11-20 16:25:51] 2025-11-20 21:24:45,813 | INFO     | intersect: -8024124705.759999
[2025-11-20 16:25:51] 2025-11-20 21:24:45,814 | INFO     | chi2: 3.8136518202399055
[2025-11-20 16:25:51] 2025-11-20 21:24:45,814 | INFO     | current chi2=3.8136518202399055 (change=1.1801849384630905 %)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,814 | INFO     | left removable region: 20
[2025-11-20 16:25:51] 2025-11-20 21:24:45,815 | INFO     | sum of square deviations: 77535863285.47609
[2025-11-20 16:25:51] 2025-11-20 21:24:45,822 | INFO     | sum of deviations: 683438591430.0374
[2025-11-20 16:25:51] 2025-11-20 21:24:45,823 | INFO     | mean x: 1763653693.0936508
[2025-11-20 16:25:51] 2025-11-20 21:24:45,823 | INFO     | mean y: 3286376.0841269842
[2025-11-20 16:25:51] 2025-11-20 21:24:45,823 | INFO     | intersect: -15542410088.794111
[2025-11-20 16:25:51] 2025-11-20 21:24:45,823 | INFO     | chi2: 0.07206925000313194
[2025-11-20 16:25:51] 2025-11-20 21:24:45,824 | INFO     | current memory leak: 8.81 B/s (using 630 data points, chi2=0.07)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,824 | INFO     | could have reported an average CPU frequency of 2377 MHz (26 samples)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,824 | INFO     | ..............................
[2025-11-20 16:25:51] 2025-11-20 21:24:45,824 | INFO     | . Timing measurements:
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | . get job = 0 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | . initial setup = 2 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | . payload setup = 8 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | . stage-in = 0 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | . payload execution = 40586 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | . stage-out = 3 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | . log creation = 0 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,825 | INFO     | ..............................
[2025-11-20 16:25:51] 2025-11-20 21:24:45,909 | INFO     | 
[2025-11-20 16:25:51] 2025-11-20 21:24:45,909 | INFO     | job summary report
[2025-11-20 16:25:51] 2025-11-20 21:24:45,909 | INFO     | --------------------------------------------------
[2025-11-20 16:25:51] 2025-11-20 21:24:45,910 | INFO     | PanDA job id: 6893827940
[2025-11-20 16:25:51] 2025-11-20 21:24:45,910 | INFO     | task id: 47523449
[2025-11-20 16:25:51] 2025-11-20 21:24:45,910 | INFO     | errors: (none)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,910 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 16:25:51] 2025-11-20 21:24:45,910 | INFO     | pilot state: finished 
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | transexitcode: 0
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | exeerrorcode: 0
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | exeerrordiag: 
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | exitcode: 0
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | exitmsg: OK
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | cpuconsumptiontime: 314878 s
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | nevents: 1000
[2025-11-20 16:25:51] 2025-11-20 21:24:45,911 | INFO     | neventsw: 0
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | pid: 29702
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | pgrp: 29702
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | corecount: 8
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | event service: False
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | sizes: {0: 2297197, 6: 2297459, 11: 2297487, 40597: 2341299, 40598: 2341298, 40603: 2351944, 40605: 2352128, 40611: 2352374}
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | --------------------------------------------------
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | 
[2025-11-20 16:25:51] 2025-11-20 21:24:45,912 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 16:25:51] 2025-11-20 21:24:45,935 | INFO     | time since job start (40628s) is within the limit (172800.0s)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,937 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,937 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,937 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,940 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,940 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,941 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 16:25:51] 2025-11-20 21:24:45,941 | INFO     | job 6893827940 has completed (purged errors)
[2025-11-20 16:25:51] 2025-11-20 21:24:45,941 | INFO     | overall cleanup function is called
[2025-11-20 16:25:51] 2025-11-20 21:24:46,956 | INFO     | --- collectZombieJob: --- 10, [29702]
[2025-11-20 16:25:51] 2025-11-20 21:24:46,956 | INFO     | zombie collector waiting for pid 29702
[2025-11-20 16:25:51] 2025-11-20 21:24:46,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 16:25:51] 2025-11-20 21:24:46,957 | INFO     | collected zombie processes
[2025-11-20 16:25:51] 2025-11-20 21:24:46,957 | INFO     | will attempt to kill all subprocesses of pid=29702
[2025-11-20 16:25:51] 2025-11-20 21:24:47,157 | INFO     | PID=23220 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 16:25:51] 2025-11-20 21:24:47,161 | INFO     | process IDs to be killed: [29702] (in reverse order)
[2025-11-20 16:25:51] 2025-11-20 21:24:47,214 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 16:25:51] 2025-11-20 21:24:47,214 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 16:25:51] 2025-11-20 21:24:47,220 | INFO     | did not find any defunct processes belonging to 29702
[2025-11-20 16:25:51] 2025-11-20 21:24:47,223 | INFO     | did not find any defunct processes belonging to 29702
[2025-11-20 16:25:51] 2025-11-20 21:24:47,225 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 16:25:51] 2025-11-20 21:24:47,225 | INFO     | ready for new job
[2025-11-20 16:25:51] 2025-11-20 21:24:47,225 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 16:25:51] 2025-11-20 21:24:47,229 | INFO     | ***************************************
[2025-11-20 16:25:51] 2025-11-20 21:24:47,229 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 16:25:51] 2025-11-20 21:24:47,229 | INFO     | ***************************************
[2025-11-20 16:25:51] 2025-11-20 21:24:47,229 | INFO     | 
[2025-11-20 16:25:51] 2025-11-20 21:24:47,229 | INFO     | architecture information:
[2025-11-20 16:25:51] 2025-11-20 21:24:47,230 | INFO     | executing command: cat /etc/os-release
[2025-11-20 16:25:51] 2025-11-20 21:24:47,248 | INFO     | cat /etc/os-release:
[2025-11-20 16:25:51] NAME="CentOS Linux"
[2025-11-20 16:25:51] VERSION="7 (Core)"
[2025-11-20 16:25:51] ID="centos"
[2025-11-20 16:25:51] ID_LIKE="rhel fedora"
[2025-11-20 16:25:51] VERSION_ID="7"
[2025-11-20 16:25:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 16:25:51] ANSI_COLOR="0;31"
[2025-11-20 16:25:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 16:25:51] HOME_URL="https://www.centos.org/"
[2025-11-20 16:25:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 16:25:51] 
[2025-11-20 16:25:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 16:25:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 16:25:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 16:25:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 16:25:51] 
[2025-11-20 16:25:51] 2025-11-20 21:24:47,248 | INFO     | ***************************************
[2025-11-20 16:25:51] 2025-11-20 21:24:47,752 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 16:25:51] 2025-11-20 21:24:47,772 | INFO     | sufficient remaining disk space (17461936128 B)
[2025-11-20 16:25:51] 2025-11-20 21:24:47,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 16:25:51] 2025-11-20 21:24:47,774 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 16:25:51] 2025-11-20 21:24:47,774 | INFO     | update_server=False
[2025-11-20 16:25:51] 2025-11-20 21:24:47,774 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 16:25:51] 2025-11-20 21:24:47,775 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 16:25:51] 2025-11-20 21:24:47,775 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-20 16:25:51] 2025-11-20 21:24:47,776 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 16:25:51] 2025-11-20 21:24:47,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 16:25:51] 2025-11-20 21:24:47,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 16:25:51] 2025-11-20 21:24:47,805 | INFO     | all data control threads have been joined
[2025-11-20 16:25:51] 2025-11-20 21:24:48,183 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 16:25:51] 2025-11-20 21:24:48,300 | INFO     | all payload control threads have been joined
[2025-11-20 16:25:51] 2025-11-20 21:24:48,545 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 16:25:51] 2025-11-20 21:24:48,545 | INFO     | aborting loop
[2025-11-20 16:25:51] 2025-11-20 21:24:48,725 | INFO     | all job control threads have been joined
[2025-11-20 16:25:51] 2025-11-20 21:24:48,780 | INFO     | [job] retrieve thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:48,780 | INFO     | [job] queue monitor thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:48,811 | INFO     | [data] control thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:48,813 | INFO     | [data] copytool_in thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:48,972 | INFO     | [payload] failed_post thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,300 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,305 | INFO     | [payload] control thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,434 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,456 | INFO     | [job] validate thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,462 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,550 | INFO     | [job] job monitor thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,729 | INFO     | [job] control thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,777 | INFO     | [payload] validate_post thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:49,906 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:50,189 | INFO     | [data] copytool_out thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:24:50,628 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 16:25:51] 2025-11-20 21:24:54,635 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 16:25:51] 2025-11-20 21:25:44,425 | INFO     | [monitor] cgroup control has ended
[2025-11-20 16:25:51] 2025-11-20 21:25:46,095 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140012063905600)>', '<ExcThread(monitor, started 140011462698752)>']
[2025-11-20 16:25:51] 2025-11-20 21:25:47,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 16:25:51] 2025-11-20 21:25:47,039 | INFO     | [monitor] control thread has ended
[2025-11-20 16:25:51] 2025-11-20 21:25:51,121 | INFO     | all workflow threads have been joined
[2025-11-20 16:25:51] 2025-11-20 21:25:51,121 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 16:25:51] 2025-11-20 21:25:51,122 | INFO     | traces error code: 0
[2025-11-20 16:25:51] 2025-11-20 21:25:51,122 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 16:25:51] 2025-11-20 21:25:51,227 [wrapper] ==== pilot stdout END ====
[2025-11-20 16:25:51] 2025-11-20 21:25:51,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 16:25:51] 2025-11-20 21:25:51,236 [wrapper] pilotpid: 23220
[2025-11-20 16:25:51] 2025-11-20 21:25:51,240 [wrapper] Pilot exit status: 0
[2025-11-20 16:25:51] 2025-11-20 21:25:51,255 [wrapper] pandaids: 6893827940
[2025-11-20 16:25:51] 2025-11-20 21:25:51,303 [wrapper] cleanup supervisor_pilot 21411 23221
[2025-11-20 16:25:51] 2025-11-20 21:25:51,308 [wrapper] Test setup, not cleaning
[2025-11-20 16:25:51] 2025-11-20 21:25:51,313 [wrapper] apfmon messages muted
[2025-11-20 16:25:51] 2025-11-20 21:25:51,317 [wrapper] ==== wrapper stdout END ====
[2025-11-20 16:25:51] 2025-11-20 21:25:51,322 [wrapper] ==== wrapper stderr END ====
[2025-11-20 16:25:51]  *** Error codes and diagnostics ***
[2025-11-20 16:25:51]     "exeErrorCode": 0,
[2025-11-20 16:25:51]     "exeErrorDiag": "",
[2025-11-20 16:25:51]     "pilotErrorCode": 0,
[2025-11-20 16:25:51]     "pilotErrorDiag": "",
[2025-11-20 16:25:51]  *** Listing of results directory ***
[2025-11-20 16:25:51] total 1318540
[2025-11-20 16:25:51] -rwx------ 1 boincer umatlas     36292 Nov 20 05:06 runpilot2-wrapper.sh
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas      5112 Nov 20 05:06 queuedata.json
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas    576529 Nov 20 05:06 pilot3.tar.gz
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas       100 Nov 20 05:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 16:25:51] -rwxr-xr-x 1 boincer umatlas      7986 Nov 20 05:07 run_atlas
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas       105 Nov 20 05:07 job.xml
[2025-11-20 16:25:51] -rw-r--r-- 2 boincer umatlas 411565643 Nov 20 05:07 EVNT.47493127._000008.pool.root.1
[2025-11-20 16:25:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:07 start_atlas.sh
[2025-11-20 16:25:51] drwxrwx--x 2 boincer umatlas      4096 Nov 20 05:07 shared
[2025-11-20 16:25:51] -rw-r--r-- 2 boincer umatlas    590088 Nov 20 05:07 input.tar.gz
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas         0 Nov 20 05:07 boinc_lockfile
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas      2779 Nov 20 05:07 pandaJob.out
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas        57 Nov 20 05:07 setup.sh.local
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas    989435 Nov 20 05:07 agis_schedconf.cvmfs.json
[2025-11-20 16:25:51] drwx------ 5 boincer umatlas      4096 Nov 20 05:07 pilot3
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas       533 Nov 20 16:12 boinc_task_state.xml
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas      5912 Nov 20 16:18 init_data.xml
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas 919598775 Nov 20 16:23 HITS.47523449._000071.pool.root.1
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas        95 Nov 20 16:24 pilot_heartbeat.json
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas      1061 Nov 20 16:24 memory_monitor_summary.json
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas   1526164 Nov 20 16:24 agis_ddmendpoints.agis.ALL.json
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas   1922787 Nov 20 16:24 log.47523449._000071.job.log.tgz.1
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas      8648 Nov 20 16:24 heartbeat.json
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 16:25 boinc_mmap_file
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas        29 Nov 20 16:25 wrapper_checkpoint.txt
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas      4552 Nov 20 16:25 pilotlog.txt
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas   5624927 Nov 20 16:25 log.47523449._000071.job.log.1
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas       353 Nov 20 16:25 output.list
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas       620 Nov 20 16:25 runtime_log
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas   7567360 Nov 20 16:25 result.tar.gz
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas      9343 Nov 20 16:25 runtime_log.err
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas       668 Nov 20 16:25 mWpMDmXjGg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGAGKDm3nsWtn.diag
[2025-11-20 16:25:51] -rw-r--r-- 1 boincer umatlas     21159 Nov 20 16:25 stderr.txt
[2025-11-20 16:25:51] HITS file was successfully produced:
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas 919598775 Nov 20 16:23 shared/HITS.pool.root.1
[2025-11-20 16:25:51]  *** Contents of shared directory: ***
[2025-11-20 16:25:51] total 1307960
[2025-11-20 16:25:51] -rw-r--r-- 2 boincer umatlas 411565643 Nov 20 05:07 ATLAS.root_0
[2025-11-20 16:25:51] -rw-r--r-- 2 boincer umatlas     15847 Nov 20 05:07 start_atlas.sh
[2025-11-20 16:25:51] -rw-r--r-- 2 boincer umatlas    590088 Nov 20 05:07 input.tar.gz
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas 919598775 Nov 20 16:23 HITS.pool.root.1
[2025-11-20 16:25:51] -rw------- 1 boincer umatlas   7567360 Nov 20 16:25 result.tar.gz
16:25:52 (19537): run_atlas exited; CPU time 313056.562582
16:25:52 (19537): called boinc_finish(0)

</stderr_txt>
]]>

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