Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:10:41 (2048509): wrapper (7.7.26015): starting
07:10:41 (2048509): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 07:10:41] Arguments: --nthreads 8
[2025-11-20 07:10:41] Threads: 8
[2025-11-20 07:10:41] Checking for CVMFS
[2025-11-20 07:10:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 07:10:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 07:10:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 07:10:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 07:10:43] 2.13.2.0 5664 25116 192416 153081 3 90 34704356 39288832 6405 16776704 0 15883165 99.591 12581952 28200 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 07:10:43] CVMFS is ok
[2025-11-20 07:10:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 07:10:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 07:10:43] Further information can be found at the LHC@home message board.
[2025-11-20 07:10:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 07:10:43] Checking for apptainer binary...
[2025-11-20 07:10:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 07:10:43] Running /usr/bin/apptainer --version
[2025-11-20 07:10:45] apptainer version 1.4.4-1.el9
[2025-11-20 07:10:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 07:10:45] c-210-30.aglt2.org
[2025-11-20 07:10:45] apptainer works
[2025-11-20 07:10:45] Set ATHENA_PROC_NUMBER=8
[2025-11-20 07:10:45] Set ATHENA_CORE_NUMBER=8
[2025-11-20 07:10:45] Starting ATLAS job with PandaID=6892548591
[2025-11-20 07:10:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 04:45:01]  *** The last 200 lines of the pilot log: ***
[2025-11-21 04:45:01] 2025-11-21 09:44:26,578 | INFO     | monitor loop #5434: job 0:6892548591 is in state 'finished'
[2025-11-21 04:45:01] 2025-11-21 09:44:26,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 04:45:01] 2025-11-21 09:44:26,646 | INFO     | time since job start (77563s) is within the limit (172800.0s)
[2025-11-21 04:45:01] 2025-11-21 09:44:27,738 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 04:45:01] 2025-11-21 09:44:27,749 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.850125
[2025-11-21 04:45:01] 2025-11-21 09:44:27,764 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892548591/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 04:45:01] 2025-11-21 09:44:27,764 | INFO     | extracted standard info from prmon json
[2025-11-21 04:45:01] 2025-11-21 09:44:27,764 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 04:45:01] 2025-11-21 09:44:27,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 04:45:01] 2025-11-21 09:44:27,815 | INFO     | fitting pss+swap vs Time
[2025-11-21 04:45:01] 2025-11-21 09:44:27,816 | INFO     | sum of square deviations: 635171374971.4966
[2025-11-21 04:45:01] 2025-11-21 09:44:27,880 | INFO     | sum of deviations: 2599497324392.14
[2025-11-21 04:45:01] 2025-11-21 09:44:27,880 | INFO     | mean x: 1763679536.5015748
[2025-11-21 04:45:01] 2025-11-21 09:44:27,880 | INFO     | mean y: 2897788.4283464565
[2025-11-21 04:45:01] 2025-11-21 09:44:27,880 | INFO     | intersect: -7215123074.723352
[2025-11-21 04:45:01] 2025-11-21 09:44:27,882 | INFO     | chi2: 7.983421335473657
[2025-11-21 04:45:01] 2025-11-21 09:44:27,884 | INFO     | sum of square deviations: 627699260028.963
[2025-11-21 04:45:01] 2025-11-21 09:44:27,939 | INFO     | sum of deviations: 3034993180545.032
[2025-11-21 04:45:01] 2025-11-21 09:44:27,940 | INFO     | mean x: 1763679384.0055337
[2025-11-21 04:45:01] 2025-11-21 09:44:27,940 | INFO     | mean y: 2906675.995256917
[2025-11-21 04:45:01] 2025-11-21 09:44:27,940 | INFO     | intersect: -8524672124.842701
[2025-11-21 04:45:01] 2025-11-21 09:44:27,946 | INFO     | chi2: 4.783354187285795
[2025-11-21 04:45:01] 2025-11-21 09:44:27,946 | INFO     | current chi2=4.783354187285795 (change=40.08390655731314 %)
[2025-11-21 04:45:01] 2025-11-21 09:44:27,947 | INFO     | sum of square deviations: 620285983398.8854
[2025-11-21 04:45:01] 2025-11-21 09:44:27,996 | INFO     | sum of deviations: 3229220985094.6973
[2025-11-21 04:45:01] 2025-11-21 09:44:27,996 | INFO     | mean x: 1763679231.5095239
[2025-11-21 04:45:01] 2025-11-21 09:44:27,996 | INFO     | mean y: 2910664.15
[2025-11-21 04:45:01] 2025-11-21 09:44:27,996 | INFO     | intersect: -9178837977.272675
[2025-11-21 04:45:01] 2025-11-21 09:44:27,998 | INFO     | chi2: 3.636540520500401
[2025-11-21 04:45:01] 2025-11-21 09:44:27,998 | INFO     | current chi2=3.636540520500401 (change=23.975094084264896 %)
[2025-11-21 04:45:01] 2025-11-21 09:44:27,998 | INFO     | right removable region: 1259
[2025-11-21 04:45:01] 2025-11-21 09:44:28,000 | INFO     | sum of square deviations: 627698484108.9633
[2025-11-21 04:45:01] 2025-11-21 09:44:28,052 | INFO     | sum of deviations: 2164050118830.2527
[2025-11-21 04:45:01] 2025-11-21 09:44:28,052 | INFO     | mean x: 1763679689.0055337
[2025-11-21 04:45:01] 2025-11-21 09:44:28,052 | INFO     | mean y: 2906670.963636364
[2025-11-21 04:45:01] 2025-11-21 09:44:28,052 | INFO     | intersect: -6077546503.921493
[2025-11-21 04:45:01] 2025-11-21 09:44:28,054 | INFO     | chi2: 4.934147835086267
[2025-11-21 04:45:01] 2025-11-21 09:44:28,054 | INFO     | current chi2=4.934147835086267 (change=38.19507166480367 %)
[2025-11-21 04:45:01] 2025-11-21 09:44:28,056 | INFO     | sum of square deviations: 620284893940.9712
[2025-11-21 04:45:01] 2025-11-21 09:44:28,095 | INFO     | sum of deviations: 2019712657230.9268
[2025-11-21 04:45:01] 2025-11-21 09:44:28,096 | INFO     | mean x: 1763679841.504762
[2025-11-21 04:45:01] 2025-11-21 09:44:28,096 | INFO     | mean y: 2909637.262698413
[2025-11-21 04:45:01] 2025-11-21 09:44:28,096 | INFO     | intersect: -5739816864.681083
[2025-11-21 04:45:01] 2025-11-21 09:44:28,097 | INFO     | chi2: 4.591710260511781
[2025-11-21 04:45:01] 2025-11-21 09:44:28,098 | INFO     | current chi2=4.591710260511781 (change=6.940156355661747 %)
[2025-11-21 04:45:01] 2025-11-21 09:44:28,098 | INFO     | left removable region: 20
[2025-11-21 04:45:01] 2025-11-21 09:44:28,099 | INFO     | sum of square deviations: 589785835335.8422
[2025-11-21 04:45:01] 2025-11-21 09:44:28,142 | INFO     | sum of deviations: 2488331507543.5854
[2025-11-21 04:45:01] 2025-11-21 09:44:28,142 | INFO     | mean x: 1763679811.0112994
[2025-11-21 04:45:01] 2025-11-21 09:44:28,142 | INFO     | mean y: 2926124.315577078
[2025-11-21 04:45:01] 2025-11-21 09:44:28,142 | INFO     | intersect: -7438113961.801305
[2025-11-21 04:45:01] 2025-11-21 09:44:28,144 | INFO     | chi2: 0.11605781202874235
[2025-11-21 04:45:01] 2025-11-21 09:44:28,148 | INFO     | current memory leak: 4.22 B/s (using 1239 data points, chi2=0.12)
[2025-11-21 04:45:01] 2025-11-21 09:44:28,149 | INFO     | could have reported an average CPU frequency of 2599 MHz (46 samples)
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | ..............................
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . Timing measurements:
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . get job = 0 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . initial setup = 7 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . payload setup = 38 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . stage-in = 0 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . payload execution = 77437 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . stage-out = 4 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,150 | INFO     | . log creation = 1 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,151 | INFO     | ..............................
[2025-11-21 04:45:01] 2025-11-21 09:44:28,287 | INFO     | 
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | job summary report
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | --------------------------------------------------
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | PanDA job id: 6892548591
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | task id: 47493029
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | errors: (none)
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | pilot state: finished 
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | transexitcode: 0
[2025-11-21 04:45:01] 2025-11-21 09:44:28,288 | INFO     | exeerrorcode: 0
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | exeerrordiag: 
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | exitcode: 0
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | exitmsg: OK
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | cpuconsumptiontime: 305437 s
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | nevents: 1000
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | neventsw: 0
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | pid: 2061608
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | pgrp: 2061608
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | corecount: 8
[2025-11-21 04:45:01] 2025-11-21 09:44:28,289 | INFO     | event service: False
[2025-11-21 04:45:01] 2025-11-21 09:44:28,290 | INFO     | sizes: {0: 2296973, 1: 2297057, 2: 2297228, 13: 2297256, 23: 2297312, 27: 2297602, 34: 2297758, 77480: 2358777, 77485: 2369423, 77503: 2369613}
[2025-11-21 04:45:01] 2025-11-21 09:44:28,290 | INFO     | --------------------------------------------------
[2025-11-21 04:45:01] 2025-11-21 09:44:28,290 | INFO     | 
[2025-11-21 04:45:01] 2025-11-21 09:44:28,290 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 04:45:01] 2025-11-21 09:44:28,376 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,376 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,376 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,376 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,379 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,379 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,379 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,380 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,381 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 04:45:01] 2025-11-21 09:44:28,381 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,381 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 04:45:01] 2025-11-21 09:44:28,381 | INFO     | job 6892548591 has completed (purged errors)
[2025-11-21 04:45:01] 2025-11-21 09:44:28,381 | INFO     | overall cleanup function is called
[2025-11-21 04:45:01] 2025-11-21 09:44:29,400 | INFO     | --- collectZombieJob: --- 10, [2061608]
[2025-11-21 04:45:01] 2025-11-21 09:44:29,400 | INFO     | zombie collector waiting for pid 2061608
[2025-11-21 04:45:01] 2025-11-21 09:44:29,401 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 04:45:01] 2025-11-21 09:44:29,401 | INFO     | collected zombie processes
[2025-11-21 04:45:01] 2025-11-21 09:44:29,401 | INFO     | will attempt to kill all subprocesses of pid=2061608
[2025-11-21 04:45:01] 2025-11-21 09:44:29,780 | INFO     | process IDs to be killed: [2061608] (in reverse order)
[2025-11-21 04:45:01] 2025-11-21 09:44:29,940 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 04:45:01] 2025-11-21 09:44:29,941 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 04:45:01] 2025-11-21 09:44:29,948 | INFO     | did not find any defunct processes belonging to 2061608
[2025-11-21 04:45:01] 2025-11-21 09:44:29,955 | INFO     | did not find any defunct processes belonging to 2061608
[2025-11-21 04:45:01] 2025-11-21 09:44:29,956 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 04:45:01] 2025-11-21 09:44:29,957 | INFO     | ready for new job
[2025-11-21 04:45:01] 2025-11-21 09:44:29,957 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 04:45:01] 2025-11-21 09:44:29,962 | INFO     | ***************************************
[2025-11-21 04:45:01] 2025-11-21 09:44:29,962 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 04:45:01] 2025-11-21 09:44:29,963 | INFO     | ***************************************
[2025-11-21 04:45:01] 2025-11-21 09:44:29,963 | INFO     | 
[2025-11-21 04:45:01] 2025-11-21 09:44:29,965 | INFO     | architecture information:
[2025-11-21 04:45:01] 2025-11-21 09:44:29,972 | INFO     | executing command: cat /etc/os-release
[2025-11-21 04:45:01] 2025-11-21 09:44:30,015 | INFO     | cat /etc/os-release:
[2025-11-21 04:45:01] NAME="CentOS Linux"
[2025-11-21 04:45:01] VERSION="7 (Core)"
[2025-11-21 04:45:01] ID="centos"
[2025-11-21 04:45:01] ID_LIKE="rhel fedora"
[2025-11-21 04:45:01] VERSION_ID="7"
[2025-11-21 04:45:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 04:45:01] ANSI_COLOR="0;31"
[2025-11-21 04:45:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 04:45:01] HOME_URL="https://www.centos.org/"
[2025-11-21 04:45:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 04:45:01] 
[2025-11-21 04:45:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 04:45:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 04:45:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 04:45:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 04:45:01] 
[2025-11-21 04:45:01] 2025-11-21 09:44:30,016 | INFO     | ***************************************
[2025-11-21 04:45:01] 2025-11-21 09:44:30,519 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 04:45:01] 2025-11-21 09:44:30,562 | INFO     | sufficient remaining disk space (47591718912 B)
[2025-11-21 04:45:01] 2025-11-21 09:44:30,562 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 04:45:01] 2025-11-21 09:44:30,562 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 04:45:01] 2025-11-21 09:44:30,563 | INFO     | update_server=False
[2025-11-21 04:45:01] 2025-11-21 09:44:30,563 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 04:45:01] 2025-11-21 09:44:30,563 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 04:45:01] 2025-11-21 09:44:30,563 | INFO     | aborting loop
[2025-11-21 04:45:01] 2025-11-21 09:44:30,565 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 04:45:01] 2025-11-21 09:44:30,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 04:45:01] 2025-11-21 09:44:31,278 | INFO     | all data control threads have been joined
[2025-11-21 04:45:01] 2025-11-21 09:44:31,511 | INFO     | all payload control threads have been joined
[2025-11-21 04:45:01] 2025-11-21 09:44:31,568 | INFO     | [job] retrieve thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:31,569 | INFO     | [job] job monitor thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:31,569 | INFO     | [job] validate thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:31,986 | INFO     | all job control threads have been joined
[2025-11-21 04:45:01] 2025-11-21 09:44:32,065 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,125 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,191 | INFO     | [data] copytool_in thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,285 | INFO     | [data] control thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,322 | INFO     | [payload] failed_post thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,323 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,396 | INFO     | [payload] validate_post thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,517 | INFO     | [payload] control thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,978 | INFO     | [data] copytool_out thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:32,992 | INFO     | [job] control thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:33,068 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:33,300 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 04:45:01] 2025-11-21 09:44:34,306 | INFO     | [job] queue monitor thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:34,576 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 04:45:01] 2025-11-21 09:44:56,227 | INFO     | [monitor] cgroup control has ended
[2025-11-21 04:45:01] 2025-11-21 09:44:56,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539930818368)>', '<ExcThread(monitor, started 140539424917248)>']
[2025-11-21 04:45:01] 2025-11-21 09:45:00,104 | INFO     | PID=2052664 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 04:45:01] 2025-11-21 09:45:00,104 | INFO     | .. there are 8 such processes running
[2025-11-21 04:45:01] 2025-11-21 09:45:00,105 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 04:45:01] 2025-11-21 09:45:00,105 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 04:45:01] 2025-11-21 09:45:00,105 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 04:45:01] 2025-11-21 09:45:00,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 04:45:01] 2025-11-21 09:45:00,105 | INFO     | [monitor] control thread has ended
[2025-11-21 04:45:01] 2025-11-21 09:45:01,497 | INFO     | all workflow threads have been joined
[2025-11-21 04:45:01] 2025-11-21 09:45:01,498 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 04:45:01] 2025-11-21 09:45:01,501 | INFO     | traces error code: 0
[2025-11-21 04:45:01] 2025-11-21 09:45:01,501 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 04:45:01] 2025-11-21 09:45:01,678 [wrapper] ==== pilot stdout END ====
[2025-11-21 04:45:01] 2025-11-21 09:45:01,684 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 04:45:01] 2025-11-21 09:45:01,688 [wrapper] pilotpid: 2052664
[2025-11-21 04:45:01] 2025-11-21 09:45:01,697 [wrapper] Pilot exit status: 0
[2025-11-21 04:45:01] 2025-11-21 09:45:01,742 [wrapper] pandaids: 6892548591
[2025-11-21 04:45:01] 2025-11-21 09:45:01,854 [wrapper] cleanup supervisor_pilot 3764854 2052665
[2025-11-21 04:45:01] 2025-11-21 09:45:01,863 [wrapper] Test setup, not cleaning
[2025-11-21 04:45:01] 2025-11-21 09:45:01,873 [wrapper] apfmon messages muted
[2025-11-21 04:45:01] 2025-11-21 09:45:01,875 [wrapper] ==== wrapper stdout END ====
[2025-11-21 04:45:01] 2025-11-21 09:45:01,878 [wrapper] ==== wrapper stderr END ====
[2025-11-21 04:45:01]  *** Error codes and diagnostics ***
[2025-11-21 04:45:01]     "exeErrorCode": 0,
[2025-11-21 04:45:01]     "exeErrorDiag": "",
[2025-11-21 04:45:01]     "pilotErrorCode": 0,
[2025-11-21 04:45:01]     "pilotErrorDiag": "",
[2025-11-21 04:45:01]  *** Listing of results directory ***
[2025-11-21 04:45:01] total 1323100
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:32 pilot3.tar.gz
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:38 queuedata.json
[2025-11-21 04:45:01] -rwx------. 1 boincer umatlas     36292 Nov 19 03:38 runpilot2-wrapper.sh
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas       100 Nov 20 07:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 04:45:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 07:10 run_atlas
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas       105 Nov 20 07:10 job.xml
[2025-11-21 04:45:01] -rw-r--r--. 2 boincer umatlas 410998335 Nov 20 07:10 EVNT.47493027._000335.pool.root.1
[2025-11-21 04:45:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 07:10 shared
[2025-11-21 04:45:01] -rw-r--r--. 2 boincer umatlas    590100 Nov 20 07:10 input.tar.gz
[2025-11-21 04:45:01] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 07:10 start_atlas.sh
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas         0 Nov 20 07:10 boinc_lockfile
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 07:10 pandaJob.out
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas    989448 Nov 20 07:11 agis_schedconf.cvmfs.json
[2025-11-21 04:45:01] drwx------. 5 boincer umatlas      4096 Nov 20 07:11 pilot3
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas       533 Nov 21 04:33 boinc_task_state.xml
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas      6663 Nov 21 04:38 init_data.xml
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas 913715530 Nov 21 04:43 HITS.47493029._003306.pool.root.1
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas      1058 Nov 21 04:44 memory_monitor_summary.json
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas   1526164 Nov 21 04:44 agis_ddmendpoints.agis.ALL.json
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas   2410570 Nov 21 04:44 log.47493029._003306.job.log.tgz.1
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas        95 Nov 21 04:44 pilot_heartbeat.json
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas      8624 Nov 21 04:44 heartbeat.json
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 04:45 boinc_mmap_file
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas        29 Nov 21 04:45 wrapper_checkpoint.txt
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas      4823 Nov 21 04:45 pilotlog.txt
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas  10698451 Nov 21 04:45 log.47493029._003306.job.log.1
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas       353 Nov 21 04:45 output.list
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas       620 Nov 21 04:45 runtime_log
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas  13127680 Nov 21 04:45 result.tar.gz
[2025-11-21 04:45:01] -rw-------. 1 boincer umatlas       660 Nov 21 04:45 rU0NDmJtsf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmp4GKDmXDoiim.diag
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas      8704 Nov 21 04:45 runtime_log.err
[2025-11-21 04:45:01] -rw-r--r--. 1 boincer umatlas     21338 Nov 21 04:45 stderr.txt
[2025-11-21 04:45:02] HITS file was successfully produced:
[2025-11-21 04:45:02] -rw-------. 1 boincer umatlas 913715530 Nov 21 04:43 shared/HITS.pool.root.1
[2025-11-21 04:45:02]  *** Contents of shared directory: ***
[2025-11-21 04:45:02] total 1307096
[2025-11-21 04:45:02] -rw-r--r--. 2 boincer umatlas 410998335 Nov 20 07:10 ATLAS.root_0
[2025-11-21 04:45:02] -rw-r--r--. 2 boincer umatlas    590100 Nov 20 07:10 input.tar.gz
[2025-11-21 04:45:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 07:10 start_atlas.sh
[2025-11-21 04:45:02] -rw-------. 1 boincer umatlas 913715530 Nov 21 04:43 HITS.pool.root.1
[2025-11-21 04:45:02] -rw-------. 1 boincer umatlas  13127680 Nov 21 04:45 result.tar.gz
04:45:03 (2048509): run_atlas exited; CPU time 305731.069630
04:45:03 (2048509): called boinc_finish(0)

</stderr_txt>
]]>

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