Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:03:02 (2354423): wrapper (7.7.26015): starting
22:03:02 (2354423): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 22:03:02] Arguments: --nthreads 8
[2025-11-20 22:03:02] Threads: 8
[2025-11-20 22:03:02] Checking for CVMFS
[2025-11-20 22:03:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 22:03:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 22:03:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 22:03:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 22:03:04] 2.13.2.0 5745 25965 183588 153104 1 341 39211295 39288833 6798 16776704 0 13117590 99.520 12146835 32438 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 22:03:04] CVMFS is ok
[2025-11-20 22:03:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 22:03:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 22:03:05] Further information can be found at the LHC@home message board.
[2025-11-20 22:03:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 22:03:05] Checking for apptainer binary...
[2025-11-20 22:03:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 22:03:05] Running /usr/bin/apptainer --version
[2025-11-20 22:03:05] apptainer version 1.4.4-1.el9
[2025-11-20 22:03:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 22:03:05] c-211-4.aglt2.org
[2025-11-20 22:03:05] apptainer works
[2025-11-20 22:03:05] Set ATHENA_PROC_NUMBER=8
[2025-11-20 22:03:05] Set ATHENA_CORE_NUMBER=8
[2025-11-20 22:03:05] Starting ATLAS job with PandaID=6892537895
[2025-11-20 22:03:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 15:24:27]  *** The last 200 lines of the pilot log: ***
[2025-11-21 15:24:27] 2025-11-21 20:22:58,598 | INFO     | time since job start (62332s) is within the limit (172800.0s)
[2025-11-21 15:24:27] 2025-11-21 20:22:59,897 | INFO     | monitor loop #4158: job 0:6892537895 is in state 'finished'
[2025-11-21 15:24:27] 2025-11-21 20:22:59,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:24:27] 2025-11-21 20:23:00,618 | INFO     | time since job start (62334s) is within the limit (172800.0s)
[2025-11-21 15:24:27] 2025-11-21 20:23:02,402 | INFO     | monitor loop #4159: job 0:6892537895 is in state 'finished'
[2025-11-21 15:24:27] 2025-11-21 20:23:02,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:24:27] 2025-11-21 20:23:02,657 | INFO     | time since job start (62336s) is within the limit (172800.0s)
[2025-11-21 15:24:27] 2025-11-21 20:23:04,700 | INFO     | time since job start (62338s) is within the limit (172800.0s)
[2025-11-21 15:24:27] 2025-11-21 20:23:04,913 | INFO     | monitor loop #4160: job 0:6892537895 is in state 'finished'
[2025-11-21 15:24:27] 2025-11-21 20:23:04,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:24:27] 2025-11-21 20:23:06,712 | INFO     | time since job start (62340s) is within the limit (172800.0s)
[2025-11-21 15:24:27] 2025-11-21 20:23:07,418 | INFO     | monitor loop #4161: job 0:6892537895 is in state 'finished'
[2025-11-21 15:24:27] 2025-11-21 20:23:07,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:24:27] 2025-11-21 20:23:08,470 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 15:24:27] 2025-11-21 20:23:08,590 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.156475
[2025-11-21 15:24:27] 2025-11-21 20:23:08,648 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6892537895/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 15:24:27] 2025-11-21 20:23:08,648 | INFO     | extracted standard info from prmon json
[2025-11-21 15:24:27] 2025-11-21 20:23:08,649 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 15:24:27] 2025-11-21 20:23:08,649 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 15:24:27] 2025-11-21 20:23:08,763 | INFO     | time since job start (62342s) is within the limit (172800.0s)
[2025-11-21 15:24:27] 2025-11-21 20:23:09,166 | INFO     | fitting pss+swap vs Time
[2025-11-21 15:24:27] 2025-11-21 20:23:09,226 | INFO     | sum of square deviations: 328038223889.82776
[2025-11-21 15:24:27] 2025-11-21 20:23:09,851 | INFO     | sum of deviations: -2344647474118.72
[2025-11-21 15:24:27] 2025-11-21 20:23:09,852 | INFO     | mean x: 1763725431.6035328
[2025-11-21 15:24:27] 2025-11-21 20:23:09,852 | INFO     | mean y: 2641162.201177625
[2025-11-21 15:24:27] 2025-11-21 20:23:09,852 | INFO     | intersect: 12608837870.65862
[2025-11-21 15:24:27] 2025-11-21 20:23:09,927 | INFO     | chi2: 69.35650141834827
[2025-11-21 15:24:27] 2025-11-21 20:23:09,928 | INFO     | sum of square deviations: 323232893018.73
[2025-11-21 15:24:27] 2025-11-21 20:23:09,966 | INFO     | monitor loop #4162: job 0:6892537895 is in state 'finished'
[2025-11-21 15:24:27] 2025-11-21 20:23:09,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 15:24:27] 2025-11-21 20:23:10,529 | INFO     | sum of deviations: -1969856278765.907
[2025-11-21 15:24:27] 2025-11-21 20:23:10,529 | INFO     | mean x: 1763725279.1143985
[2025-11-21 15:24:27] 2025-11-21 20:23:10,529 | INFO     | mean y: 2653055.171597633
[2025-11-21 15:24:27] 2025-11-21 20:23:10,530 | INFO     | intersect: 10751204301.409801
[2025-11-21 15:24:27] 2025-11-21 20:23:10,531 | INFO     | chi2: 63.96139159294017
[2025-11-21 15:24:27] 2025-11-21 20:23:10,562 | INFO     | current chi2=63.96139159294017 (change=7.778809073522311 %)
[2025-11-21 15:24:27] 2025-11-21 20:23:10,562 | INFO     | right removable region: 1013
[2025-11-21 15:24:27] 2025-11-21 20:23:10,565 | INFO     | sum of square deviations: 323231398998.26843
[2025-11-21 15:24:27] 2025-11-21 20:23:10,687 | INFO     | sum of deviations: -2694543325604.2515
[2025-11-21 15:24:27] 2025-11-21 20:23:10,688 | INFO     | mean x: 1763725584.116371
[2025-11-21 15:24:27] 2025-11-21 20:23:10,688 | INFO     | mean y: 2652260.714003945
[2025-11-21 15:24:27] 2025-11-21 20:23:10,688 | INFO     | intersect: 14705540085.370192
[2025-11-21 15:24:27] 2025-11-21 20:23:10,697 | INFO     | chi2: 65.82028982544325
[2025-11-21 15:24:27] 2025-11-21 20:23:10,697 | INFO     | current chi2=65.82028982544325 (change=5.098601458535383 %)
[2025-11-21 15:24:27] 2025-11-21 20:23:10,698 | INFO     | left removable region: 10
[2025-11-21 15:24:27] 2025-11-21 20:23:10,699 | INFO     | sum of square deviations: 312823953200.5044
[2025-11-21 15:24:27] 2025-11-21 20:23:10,806 | INFO     | sum of deviations: -2568422835516.706
[2025-11-21 15:24:27] 2025-11-21 20:23:10,807 | INFO     | mean x: 1763725553.6420739
[2025-11-21 15:24:27] 2025-11-21 20:23:10,807 | INFO     | mean y: 2677133.6470588236
[2025-11-21 15:24:27] 2025-11-21 20:23:10,807 | INFO     | intersect: 14483642997.073605
[2025-11-21 15:24:27] 2025-11-21 20:23:10,809 | INFO     | chi2: 56.376301317020285
[2025-11-21 15:24:27] 2025-11-21 20:23:10,809 | INFO     | current memory leak: -8.21 B/s (using 1003 data points, chi2=56.38)
[2025-11-21 15:24:27] 2025-11-21 20:23:10,810 | INFO     | could have reported an average CPU frequency of 2600 MHz (38 samples)
[2025-11-21 15:24:27] 2025-11-21 20:23:10,810 | INFO     | ..............................
[2025-11-21 15:24:27] 2025-11-21 20:23:10,810 | INFO     | . Timing measurements:
[2025-11-21 15:24:27] 2025-11-21 20:23:10,810 | INFO     | . get job = 0 s
[2025-11-21 15:24:27] 2025-11-21 20:23:10,810 | INFO     | . initial setup = 7 s
[2025-11-21 15:24:27] 2025-11-21 20:23:10,811 | INFO     | . payload setup = 42 s
[2025-11-21 15:24:27] 2025-11-21 20:23:10,811 | INFO     | . stage-in = 0 s
[2025-11-21 15:24:27] 2025-11-21 20:23:10,811 | INFO     | . payload execution = 62132 s
[2025-11-21 15:24:27] 2025-11-21 20:23:10,822 | INFO     | . stage-out = 32 s
[2025-11-21 15:24:27] 2025-11-21 20:23:10,822 | INFO     | . log creation = 8 s
[2025-11-21 15:24:27] 2025-11-21 20:23:10,822 | INFO     | ..............................
[2025-11-21 15:24:27] 2025-11-21 20:23:11,253 | INFO     | time since job start (62345s) is within the limit (172800.0s)
[2025-11-21 15:24:27] 2025-11-21 20:23:11,720 | INFO     | 
[2025-11-21 15:24:27] 2025-11-21 20:23:11,720 | INFO     | job summary report
[2025-11-21 15:24:27] 2025-11-21 20:23:11,720 | INFO     | --------------------------------------------------
[2025-11-21 15:24:27] 2025-11-21 20:23:11,720 | INFO     | PanDA job id: 6892537895
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | task id: 47493029
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | errors: (none)
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | pilot state: finished 
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | transexitcode: 0
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | exeerrorcode: 0
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | exeerrordiag: 
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | exitcode: 0
[2025-11-21 15:24:27] 2025-11-21 20:23:11,721 | INFO     | exitmsg: OK
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | cpuconsumptiontime: 293504 s
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | nevents: 1000
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | neventsw: 0
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | pid: 2366812
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | pgrp: 2366812
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | corecount: 8
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | event service: False
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | sizes: {0: 2297968, 1: 2298569, 2: 2298681, 3: 2298880, 14: 2298880, 25: 2298908, 29: 2299326, 36: 2299354, 62181: 2352787, 62183: 2352786, 62216: 2361836, 62219: 
[2025-11-21 15:24:27] 2025-11-21 20:23:11,722 | INFO     | --------------------------------------------------
[2025-11-21 15:24:27] 2025-11-21 20:23:11,723 | INFO     | 
[2025-11-21 15:24:27] 2025-11-21 20:23:11,723 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 15:24:27] 2025-11-21 20:23:11,959 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,960 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,961 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,962 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 15:24:27] 2025-11-21 20:23:11,962 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,962 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 15:24:27] 2025-11-21 20:23:11,962 | INFO     | job 6892537895 has completed (purged errors)
[2025-11-21 15:24:27] 2025-11-21 20:23:11,962 | INFO     | overall cleanup function is called
[2025-11-21 15:24:27] 2025-11-21 20:23:12,989 | INFO     | --- collectZombieJob: --- 10, [2366812]
[2025-11-21 15:24:27] 2025-11-21 20:23:12,989 | INFO     | zombie collector waiting for pid 2366812
[2025-11-21 15:24:27] 2025-11-21 20:23:12,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 15:24:27] 2025-11-21 20:23:12,990 | INFO     | collected zombie processes
[2025-11-21 15:24:27] 2025-11-21 20:23:12,990 | INFO     | will attempt to kill all subprocesses of pid=2366812
[2025-11-21 15:24:27] 2025-11-21 20:23:16,552 | INFO     | process IDs to be killed: [2366812] (in reverse order)
[2025-11-21 15:24:27] 2025-11-21 20:23:17,662 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 15:24:27] 2025-11-21 20:23:17,662 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 15:24:27] 2025-11-21 20:23:17,745 | INFO     | did not find any defunct processes belonging to 2366812
[2025-11-21 15:24:27] 2025-11-21 20:23:17,806 | INFO     | did not find any defunct processes belonging to 2366812
[2025-11-21 15:24:27] 2025-11-21 20:23:17,841 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 15:24:27] 2025-11-21 20:23:17,842 | INFO     | ready for new job
[2025-11-21 15:24:27] 2025-11-21 20:23:17,842 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 15:24:27] 2025-11-21 20:23:17,871 | INFO     | ***************************************
[2025-11-21 15:24:27] 2025-11-21 20:23:17,871 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 15:24:27] 2025-11-21 20:23:17,872 | INFO     | ***************************************
[2025-11-21 15:24:27] 2025-11-21 20:23:17,872 | INFO     | 
[2025-11-21 15:24:27] 2025-11-21 20:23:17,913 | INFO     | architecture information:
[2025-11-21 15:24:27] 2025-11-21 20:23:17,914 | INFO     | executing command: cat /etc/os-release
[2025-11-21 15:24:27] 2025-11-21 20:23:18,221 | INFO     | cat /etc/os-release:
[2025-11-21 15:24:27] NAME="CentOS Linux"
[2025-11-21 15:24:27] VERSION="7 (Core)"
[2025-11-21 15:24:27] ID="centos"
[2025-11-21 15:24:27] ID_LIKE="rhel fedora"
[2025-11-21 15:24:27] VERSION_ID="7"
[2025-11-21 15:24:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 15:24:27] ANSI_COLOR="0;31"
[2025-11-21 15:24:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 15:24:27] HOME_URL="https://www.centos.org/"
[2025-11-21 15:24:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 15:24:27] 
[2025-11-21 15:24:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 15:24:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 15:24:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 15:24:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 15:24:27] 
[2025-11-21 15:24:27] 2025-11-21 20:23:18,230 | INFO     | ***************************************
[2025-11-21 15:24:27] 2025-11-21 20:23:18,755 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 15:24:27] 2025-11-21 20:23:19,022 | INFO     | sufficient remaining disk space (47290777600 B)
[2025-11-21 15:24:27] 2025-11-21 20:23:19,023 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 15:24:27] 2025-11-21 20:23:19,023 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 15:24:27] 2025-11-21 20:23:19,023 | INFO     | update_server=False
[2025-11-21 15:24:27] 2025-11-21 20:23:19,023 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 15:24:27] 2025-11-21 20:23:19,023 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 15:24:27] 2025-11-21 20:23:19,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:24:27] 2025-11-21 20:23:19,024 | INFO     | aborting loop
[2025-11-21 15:24:27] 2025-11-21 20:23:19,416 | INFO     | all payload control threads have been joined
[2025-11-21 15:24:27] 2025-11-21 20:23:19,544 | INFO     | all data control threads have been joined
[2025-11-21 15:24:27] 2025-11-21 20:23:19,647 | INFO     | all job control threads have been joined
[2025-11-21 15:24:27] 2025-11-21 20:23:19,803 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 15:24:27] 2025-11-21 20:23:20,029 | INFO     | [job] retrieve thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,030 | INFO     | [job] job monitor thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,255 | INFO     | [payload] failed_post thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,422 | INFO     | [payload] control thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,515 | INFO     | [data] copytool_in thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,527 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,653 | INFO     | [job] control thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,550 | INFO     | [data] control thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,780 | INFO     | [payload] validate_post thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:20,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 15:24:27] 2025-11-21 20:23:21,422 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:21,521 | INFO     | [job] validate thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:21,546 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:21,546 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:21,810 | INFO     | [data] copytool_out thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:21,926 | INFO     | [job] queue monitor thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:23,159 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 15:24:27] 2025-11-21 20:23:47,677 | INFO     | PID=2358502 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 15:24:27] 2025-11-21 20:23:47,677 | INFO     | .. there are 10 such processes running
[2025-11-21 15:24:27] 2025-11-21 20:23:47,679 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 15:24:27] 2025-11-21 20:23:47,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 15:24:27] 2025-11-21 20:23:47,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 15:24:27] 2025-11-21 20:23:57,317 | INFO     | [monitor] cgroup control has ended
[2025-11-21 15:24:27] 2025-11-21 20:23:58,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454365652800)>', '<ExcThread(monitor, started 140453869508352)>']
[2025-11-21 15:24:27] 2025-11-21 20:23:58,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 15:24:27] 2025-11-21 20:23:58,811 | INFO     | [monitor] control thread has ended
[2025-11-21 15:24:27] 2025-11-21 20:24:03,297 | INFO     | all workflow threads have been joined
[2025-11-21 15:24:27] 2025-11-21 20:24:03,297 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 15:24:27] 2025-11-21 20:24:03,298 | INFO     | traces error code: 0
[2025-11-21 15:24:27] 2025-11-21 20:24:03,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 15:24:27] 2025-11-21 20:24:04,932 [wrapper] ==== pilot stdout END ====
[2025-11-21 15:24:27] 2025-11-21 20:24:05,072 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 15:24:27] 2025-11-21 20:24:05,144 [wrapper] pilotpid: 2358502
[2025-11-21 15:24:27] 2025-11-21 20:24:05,176 [wrapper] Pilot exit status: 0
[2025-11-21 15:24:27] 2025-11-21 20:24:05,312 [wrapper] pandaids: 6892537895
[2025-11-21 15:24:27] 2025-11-21 20:24:06,022 [wrapper] cleanup supervisor_pilot 3890381 2358503
[2025-11-21 15:24:27] 2025-11-21 20:24:06,053 [wrapper] Test setup, not cleaning
[2025-11-21 15:24:27] 2025-11-21 20:24:06,110 [wrapper] apfmon messages muted
[2025-11-21 15:24:27] 2025-11-21 20:24:06,154 [wrapper] ==== wrapper stdout END ====
[2025-11-21 15:24:27] 2025-11-21 20:24:06,221 [wrapper] ==== wrapper stderr END ====
[2025-11-21 15:24:27]  *** Error codes and diagnostics ***
[2025-11-21 15:24:27]     "exeErrorCode": 0,
[2025-11-21 15:24:27]     "exeErrorDiag": "",
[2025-11-21 15:24:27]     "pilotErrorCode": 0,
[2025-11-21 15:24:27]     "pilotErrorDiag": "",
[2025-11-21 15:24:27]  *** Listing of results directory ***
[2025-11-21 15:24:27] total 1324684
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 02:27 queuedata.json
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 02:27 pilot3.tar.gz
[2025-11-21 15:24:27] -rwx------. 1 boincer umatlas     36292 Nov 19 02:28 runpilot2-wrapper.sh
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas       100 Nov 20 22:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 15:24:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 22:03 run_atlas
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas       105 Nov 20 22:03 job.xml
[2025-11-21 15:24:27] -rw-r--r--. 2 boincer umatlas 410498942 Nov 20 22:03 EVNT.47493027._000220.pool.root.1
[2025-11-21 15:24:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 22:03 start_atlas.sh
[2025-11-21 15:24:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 22:03 shared
[2025-11-21 15:24:27] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 22:03 input.tar.gz
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas         0 Nov 20 22:03 boinc_lockfile
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 22:03 pandaJob.out
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas    989817 Nov 20 22:04 agis_schedconf.cvmfs.json
[2025-11-21 15:24:27] drwx------. 5 boincer umatlas      4096 Nov 20 22:04 pilot3
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas       533 Nov 21 12:52 boinc_task_state.xml
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas 921046831 Nov 21 15:14 HITS.47493029._002158.pool.root.1
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas      6660 Nov 21 15:20 init_data.xml
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas      1057 Nov 21 15:21 memory_monitor_summary.json
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas   1526164 Nov 21 15:21 agis_ddmendpoints.agis.ALL.json
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas   2192984 Nov 21 15:22 log.47493029._002158.job.log.tgz.1
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas      8634 Nov 21 15:23 heartbeat.json
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas        95 Nov 21 15:23 pilot_heartbeat.json
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas      4824 Nov 21 15:24 pilotlog.txt
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas   8313208 Nov 21 15:24 log.47493029._002158.job.log.1
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 15:24 boinc_mmap_file
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas        29 Nov 21 15:24 wrapper_checkpoint.txt
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas       353 Nov 21 15:24 output.list
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas       620 Nov 21 15:24 runtime_log
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas  10526720 Nov 21 15:24 result.tar.gz
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas       659 Nov 21 15:24 tgXNDmBnrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm40FKDmwiNktn.diag
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas      8699 Nov 21 15:24 runtime_log.err
[2025-11-21 15:24:27] -rw-r--r--. 1 boincer umatlas     21804 Nov 21 15:24 stderr.txt
[2025-11-21 15:24:27] HITS file was successfully produced:
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas 921046831 Nov 21 15:14 shared/HITS.pool.root.1
[2025-11-21 15:24:27]  *** Contents of shared directory: ***
[2025-11-21 15:24:27] total 1311220
[2025-11-21 15:24:27] -rw-r--r--. 2 boincer umatlas 410498942 Nov 20 22:03 ATLAS.root_0
[2025-11-21 15:24:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 22:03 start_atlas.sh
[2025-11-21 15:24:27] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 22:03 input.tar.gz
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas 921046831 Nov 21 15:14 HITS.pool.root.1
[2025-11-21 15:24:27] -rw-------. 1 boincer umatlas  10526720 Nov 21 15:24 result.tar.gz
15:24:29 (2354423): run_atlas exited; CPU time 294202.607205
15:24:29 (2354423): called boinc_finish(0)

</stderr_txt>
]]>

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