Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:56:20 (1039837): wrapper (7.7.26015): starting
03:56:20 (1039837): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 03:56:20] Arguments: --nthreads 8
[2025-11-20 03:56:20] Threads: 8
[2025-11-20 03:56:20] Checking for CVMFS
[2025-11-20 03:56:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 03:56:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 03:56:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 03:56:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 03:56:23] 2.13.2.0 5239 24886 171836 153075 0 357 35641480 39288832 9106 16776704 0 12751267 99.634 11544298 36453 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 03:56:23] CVMFS is ok
[2025-11-20 03:56:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 03:56:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 03:56:23] Further information can be found at the LHC@home message board.
[2025-11-20 03:56:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 03:56:23] Checking for apptainer binary...
[2025-11-20 03:56:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 03:56:23] Running /usr/bin/apptainer --version
[2025-11-20 03:56:23] apptainer version 1.4.4-1.el9
[2025-11-20 03:56:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 03:56:24] c-210-6.aglt2.org
[2025-11-20 03:56:24] apptainer works
[2025-11-20 03:56:24] Set ATHENA_PROC_NUMBER=8
[2025-11-20 03:56:24] Set ATHENA_CORE_NUMBER=8
[2025-11-20 03:56:24] Starting ATLAS job with PandaID=6891568644
[2025-11-20 03:56:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:52:19]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:52:19] 2025-11-21 04:51:02,003 | INFO     | executing command: lscpu
[2025-11-20 23:52:19] 2025-11-21 04:51:02,128 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-20 23:52:19] 2025-11-21 04:51:02,731 | INFO     | monitor loop #4704: job 0:6891568644 is in state 'finished'
[2025-11-20 23:52:19] 2025-11-21 04:51:02,734 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:52:19] 2025-11-21 04:51:03,696 | INFO     | time since job start (71579s) is within the limit (172800.0s)
[2025-11-20 23:52:19] 2025-11-21 04:51:05,241 | INFO     | monitor loop #4705: job 0:6891568644 is in state 'finished'
[2025-11-20 23:52:19] 2025-11-21 04:51:05,253 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:52:19] 2025-11-21 04:51:05,705 | INFO     | time since job start (71581s) is within the limit (172800.0s)
[2025-11-20 23:52:19] 2025-11-21 04:51:07,714 | INFO     | time since job start (71583s) is within the limit (172800.0s)
[2025-11-20 23:52:19] 2025-11-21 04:51:07,758 | INFO     | monitor loop #4706: job 0:6891568644 is in state 'finished'
[2025-11-20 23:52:19] 2025-11-21 04:51:07,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:52:19] 2025-11-21 04:51:09,723 | INFO     | time since job start (71585s) is within the limit (172800.0s)
[2025-11-20 23:52:19] 2025-11-21 04:51:10,261 | INFO     | monitor loop #4707: job 0:6891568644 is in state 'finished'
[2025-11-20 23:52:19] 2025-11-21 04:51:10,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:52:19] 2025-11-21 04:51:11,730 | INFO     | time since job start (71587s) is within the limit (172800.0s)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,146 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-20 23:52:19] 2025-11-21 04:51:12,154 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2782
[2025-11-20 23:52:19] 2025-11-21 04:51:12,162 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891568644/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,163 | INFO     | extracted standard info from prmon json
[2025-11-20 23:52:19] 2025-11-21 04:51:12,164 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:52:19] 2025-11-21 04:51:12,164 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:52:19] 2025-11-21 04:51:12,196 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:52:19] 2025-11-21 04:51:12,199 | INFO     | sum of square deviations: 496531119689.56854
[2025-11-20 23:52:19] 2025-11-21 04:51:12,242 | INFO     | sum of deviations: 5614067414813.721
[2025-11-20 23:52:19] 2025-11-21 04:51:12,242 | INFO     | mean x: 1763664965.3948717
[2025-11-20 23:52:19] 2025-11-21 04:51:12,242 | INFO     | mean y: 2804510.4854700854
[2025-11-20 23:52:19] 2025-11-21 04:51:12,243 | INFO     | intersect: -19938209496.97943
[2025-11-20 23:52:19] 2025-11-21 04:51:12,244 | INFO     | chi2: 19.84072139916336
[2025-11-20 23:52:19] 2025-11-21 04:51:12,246 | INFO     | sum of square deviations: 490192229159.98737
[2025-11-20 23:52:19] 2025-11-21 04:51:12,288 | INFO     | sum of deviations: 5996918025020.691
[2025-11-20 23:52:19] 2025-11-21 04:51:12,288 | INFO     | mean x: 1763664812.9072962
[2025-11-20 23:52:19] 2025-11-21 04:51:12,288 | INFO     | mean y: 2813718.719313305
[2025-11-20 23:52:19] 2025-11-21 04:51:12,288 | INFO     | intersect: -21573524455.271954
[2025-11-20 23:52:19] 2025-11-21 04:51:12,290 | INFO     | chi2: 16.68340908384993
[2025-11-20 23:52:19] 2025-11-21 04:51:12,291 | INFO     | current chi2=16.68340908384993 (change=15.913293936210234 %)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,291 | INFO     | right removable region: 1164
[2025-11-20 23:52:19] 2025-11-21 04:51:12,293 | INFO     | sum of square deviations: 490190234220.8012
[2025-11-20 23:52:19] 2025-11-21 04:51:12,352 | INFO     | sum of deviations: 5135135929871.628
[2025-11-20 23:52:19] 2025-11-21 04:51:12,356 | INFO     | mean x: 1763665117.9064379
[2025-11-20 23:52:19] 2025-11-21 04:51:12,356 | INFO     | mean y: 2816028.583690987
[2025-11-20 23:52:19] 2025-11-21 04:51:12,356 | INFO     | intersect: -18472990878.542797
[2025-11-20 23:52:19] 2025-11-21 04:51:12,364 | INFO     | chi2: 15.08161412728187
[2025-11-20 23:52:19] 2025-11-21 04:51:12,365 | INFO     | current chi2=15.08161412728187 (change=23.986563674454757 %)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,368 | INFO     | left removable region: 10
[2025-11-20 23:52:19] 2025-11-21 04:51:12,371 | INFO     | sum of square deviations: 476433019935.49493
[2025-11-20 23:52:19] 2025-11-21 04:51:12,405 | INFO     | sum of deviations: 5200161958711.957
[2025-11-20 23:52:19] 2025-11-21 04:51:12,406 | INFO     | mean x: 1763665087.434142
[2025-11-20 23:52:19] 2025-11-21 04:51:12,406 | INFO     | mean y: 2837483.2296360484
[2025-11-20 23:52:19] 2025-11-21 04:51:12,406 | INFO     | intersect: -19247180277.556858
[2025-11-20 23:52:19] 2025-11-21 04:51:12,407 | INFO     | chi2: 7.818103186935211
[2025-11-20 23:52:19] 2025-11-21 04:51:12,407 | INFO     | current memory leak: 10.91 B/s (using 1154 data points, chi2=7.82)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | could have reported an average CPU frequency of 2597 MHz (42 samples)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | ..............................
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | . Timing measurements:
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | . get job = 0 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | . initial setup = 4 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | . payload setup = 69 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | . stage-in = 1 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,409 | INFO     | . payload execution = 71389 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,410 | INFO     | . stage-out = 4 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,410 | INFO     | . log creation = 1 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,410 | INFO     | ..............................
[2025-11-20 23:52:19] 2025-11-21 04:51:12,558 | INFO     | 
[2025-11-20 23:52:19] 2025-11-21 04:51:12,558 | INFO     | job summary report
[2025-11-20 23:52:19] 2025-11-21 04:51:12,558 | INFO     | --------------------------------------------------
[2025-11-20 23:52:19] 2025-11-21 04:51:12,558 | INFO     | PanDA job id: 6891568644
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | task id: 47493068
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | errors: (none)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | pilot state: finished 
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | transexitcode: 0
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | exeerrorcode: 0
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | exeerrordiag: 
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | exitcode: 0
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | exitmsg: OK
[2025-11-20 23:52:19] 2025-11-21 04:51:12,559 | INFO     | cpuconsumptiontime: 293918 s
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | nevents: 1000
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | neventsw: 0
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | pid: 1062307
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | pgrp: 1062307
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | corecount: 8
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | event service: False
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | sizes: {0: 2296372, 1: 2296973, 2: 2297085, 3: 2297284, 15: 2297284, 26: 2297312, 38: 2297468, 50: 2297496, 52: 2297786, 60: 2297814, 71463: 2356552, 71468: 236719
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | --------------------------------------------------
[2025-11-20 23:52:19] 2025-11-21 04:51:12,560 | INFO     | 
[2025-11-20 23:52:19] 2025-11-21 04:51:12,561 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 23:52:19] 2025-11-21 04:51:12,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:52:19] 2025-11-21 04:51:12,601 | INFO     | job 6891568644 has completed (purged errors)
[2025-11-20 23:52:19] 2025-11-21 04:51:12,601 | INFO     | overall cleanup function is called
[2025-11-20 23:52:19] 2025-11-21 04:51:13,162 | INFO     | PID=1045808 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-20 23:52:19] 2025-11-21 04:51:13,162 | INFO     | .. there are 9 such processes running
[2025-11-20 23:52:19] 2025-11-21 04:51:13,619 | INFO     | --- collectZombieJob: --- 10, [1062307]
[2025-11-20 23:52:19] 2025-11-21 04:51:13,619 | INFO     | zombie collector waiting for pid 1062307
[2025-11-20 23:52:19] 2025-11-21 04:51:13,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:52:19] 2025-11-21 04:51:13,619 | INFO     | collected zombie processes
[2025-11-20 23:52:19] 2025-11-21 04:51:13,619 | INFO     | will attempt to kill all subprocesses of pid=1062307
[2025-11-20 23:52:19] 2025-11-21 04:51:14,010 | INFO     | process IDs to be killed: [1062307] (in reverse order)
[2025-11-20 23:52:19] 2025-11-21 04:51:14,112 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:52:19] 2025-11-21 04:51:14,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:52:19] 2025-11-21 04:51:14,122 | INFO     | did not find any defunct processes belonging to 1062307
[2025-11-20 23:52:19] 2025-11-21 04:51:14,131 | INFO     | did not find any defunct processes belonging to 1062307
[2025-11-20 23:52:19] 2025-11-21 04:51:14,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:52:19] 2025-11-21 04:51:14,133 | INFO     | ready for new job
[2025-11-20 23:52:19] 2025-11-21 04:51:14,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:52:19] 2025-11-21 04:51:14,141 | INFO     | ***************************************
[2025-11-20 23:52:19] 2025-11-21 04:51:14,141 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:52:19] 2025-11-21 04:51:14,141 | INFO     | ***************************************
[2025-11-20 23:52:19] 2025-11-21 04:51:14,141 | INFO     | 
[2025-11-20 23:52:19] 2025-11-21 04:51:14,144 | INFO     | architecture information:
[2025-11-20 23:52:19] 2025-11-21 04:51:14,145 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:52:19] 2025-11-21 04:51:14,164 | INFO     | cat /etc/os-release:
[2025-11-20 23:52:19] NAME="CentOS Linux"
[2025-11-20 23:52:19] VERSION="7 (Core)"
[2025-11-20 23:52:19] ID="centos"
[2025-11-20 23:52:19] ID_LIKE="rhel fedora"
[2025-11-20 23:52:19] VERSION_ID="7"
[2025-11-20 23:52:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:52:19] ANSI_COLOR="0;31"
[2025-11-20 23:52:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:52:19] HOME_URL="https://www.centos.org/"
[2025-11-20 23:52:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:52:19] 
[2025-11-20 23:52:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:52:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:52:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:52:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:52:19] 
[2025-11-20 23:52:19] 2025-11-21 04:51:14,164 | INFO     | ***************************************
[2025-11-20 23:52:19] 2025-11-21 04:51:14,667 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 23:52:19] 2025-11-21 04:51:14,727 | INFO     | sufficient remaining disk space (49580867584 B)
[2025-11-20 23:52:19] 2025-11-21 04:51:14,730 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:52:19] 2025-11-21 04:51:14,730 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:52:19] 2025-11-21 04:51:14,730 | INFO     | update_server=False
[2025-11-20 23:52:19] 2025-11-21 04:51:14,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:52:19] 2025-11-21 04:51:14,731 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:52:19] 2025-11-21 04:51:14,731 | INFO     | aborting loop
[2025-11-20 23:52:19] 2025-11-21 04:51:14,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:52:19] 2025-11-21 04:51:15,131 | INFO     | all payload control threads have been joined
[2025-11-20 23:52:19] 2025-11-21 04:51:15,161 | INFO     | all data control threads have been joined
[2025-11-20 23:52:19] 2025-11-21 04:51:15,657 | INFO     | all job control threads have been joined
[2025-11-20 23:52:19] 2025-11-21 04:51:15,735 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:15,739 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:15,989 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,040 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,072 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:52:19] 2025-11-21 04:51:16,141 | INFO     | [payload] control thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,166 | INFO     | [data] control thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,260 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,576 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,664 | INFO     | [job] control thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,683 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,741 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:16,868 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:17,056 | INFO     | [job] validate thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:17,105 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:17,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:52:19] 2025-11-21 04:51:18,589 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:20,083 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:52:19] 2025-11-21 04:51:45,513 | INFO     | PID=1045808 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:52:19] 2025-11-21 04:51:45,514 | INFO     | .. there are 8 such processes running
[2025-11-20 23:52:19] 2025-11-21 04:51:45,514 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:52:19] 2025-11-21 04:51:45,514 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:52:19] 2025-11-21 04:51:45,514 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:52:19] 2025-11-21 04:52:13,909 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:52:19] 2025-11-21 04:52:14,043 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802828298048)>', '<ExcThread(monitor, started 139802091435776)>']
[2025-11-20 23:52:19] 2025-11-21 04:52:14,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:52:19] 2025-11-21 04:52:14,691 | INFO     | [monitor] control thread has ended
[2025-11-20 23:52:19] 2025-11-21 04:52:19,069 | INFO     | all workflow threads have been joined
[2025-11-20 23:52:19] 2025-11-21 04:52:19,069 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:52:19] 2025-11-21 04:52:19,069 | INFO     | traces error code: 0
[2025-11-20 23:52:19] 2025-11-21 04:52:19,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:52:19] 2025-11-21 04:52:19,215 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:52:19] 2025-11-21 04:52:19,233 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:52:19] 2025-11-21 04:52:19,242 [wrapper] pilotpid: 1045808
[2025-11-20 23:52:19] 2025-11-21 04:52:19,247 [wrapper] Pilot exit status: 0
[2025-11-20 23:52:19] 2025-11-21 04:52:19,263 [wrapper] pandaids: 6891568644
[2025-11-20 23:52:19] 2025-11-21 04:52:19,343 [wrapper] cleanup supervisor_pilot 2765318 1045809
[2025-11-20 23:52:19] 2025-11-21 04:52:19,347 [wrapper] Test setup, not cleaning
[2025-11-20 23:52:19] 2025-11-21 04:52:19,354 [wrapper] apfmon messages muted
[2025-11-20 23:52:19] 2025-11-21 04:52:19,358 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:52:19] 2025-11-21 04:52:19,361 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:52:19]  *** Error codes and diagnostics ***
[2025-11-20 23:52:19]     "exeErrorCode": 0,
[2025-11-20 23:52:19]     "exeErrorDiag": "",
[2025-11-20 23:52:19]     "pilotErrorCode": 0,
[2025-11-20 23:52:19]     "pilotErrorDiag": "",
[2025-11-20 23:52:19]  *** Listing of results directory ***
[2025-11-20 23:52:19] total 1317824
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-20 23:52:19] -rwx------. 1 boincer umatlas     36292 Nov 18 10:31 runpilot2-wrapper.sh
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:32 queuedata.json
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas       100 Nov 20 03:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:52:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 03:56 run_atlas
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas       105 Nov 20 03:56 job.xml
[2025-11-20 23:52:19] -rw-r--r--. 2 boincer umatlas 408413375 Nov 20 03:56 EVNT.47493065._000187.pool.root.1
[2025-11-20 23:52:19] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 03:56 start_atlas.sh
[2025-11-20 23:52:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 03:56 shared
[2025-11-20 23:52:19] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 03:56 input.tar.gz
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas         0 Nov 20 03:56 boinc_lockfile
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 03:56 pandaJob.out
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas    989443 Nov 20 03:58 agis_schedconf.cvmfs.json
[2025-11-20 23:52:19] drwx------. 5 boincer umatlas      4096 Nov 20 03:58 pilot3
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas       533 Nov 20 23:39 boinc_task_state.xml
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas      6660 Nov 20 23:48 init_data.xml
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas 913395845 Nov 20 23:50 HITS.47493068._001869.pool.root.1
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas      1055 Nov 20 23:50 memory_monitor_summary.json
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas   1526164 Nov 20 23:50 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas   2322224 Nov 20 23:51 log.47493068._001869.job.log.tgz.1
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas        95 Nov 20 23:51 pilot_heartbeat.json
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas      8630 Nov 20 23:51 heartbeat.json
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 23:52 boinc_mmap_file
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas        29 Nov 20 23:52 wrapper_checkpoint.txt
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas      4823 Nov 20 23:52 pilotlog.txt
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas   9540262 Nov 20 23:52 log.47493068._001869.job.log.1
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas       353 Nov 20 23:52 output.list
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas       620 Nov 20 23:52 runtime_log
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas  11878400 Nov 20 23:52 result.tar.gz
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas      8699 Nov 20 23:52 runtime_log.err
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas       659 Nov 20 23:52 QoLKDmYrcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDUFKDmGQJhKm.diag
[2025-11-20 23:52:19] -rw-r--r--. 1 boincer umatlas     21931 Nov 20 23:52 stderr.txt
[2025-11-20 23:52:19] HITS file was successfully produced:
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas 913395845 Nov 20 23:50 shared/HITS.pool.root.1
[2025-11-20 23:52:19]  *** Contents of shared directory: ***
[2025-11-20 23:52:19] total 1303036
[2025-11-20 23:52:19] -rw-r--r--. 2 boincer umatlas 408413375 Nov 20 03:56 ATLAS.root_0
[2025-11-20 23:52:19] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 03:56 start_atlas.sh
[2025-11-20 23:52:19] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 03:56 input.tar.gz
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas 913395845 Nov 20 23:50 HITS.pool.root.1
[2025-11-20 23:52:19] -rw-------. 1 boincer umatlas  11878400 Nov 20 23:52 result.tar.gz
23:52:21 (1039837): run_atlas exited; CPU time 295011.690310
23:52:21 (1039837): called boinc_finish(0)

</stderr_txt>
]]>

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