Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
05:04:44 (2901321): wrapper (7.7.26015): starting
05:04:44 (2901321): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 05:04:44] Arguments: --nthreads 4
[2025-11-21 05:04:44] Threads: 4
[2025-11-21 05:04:44] Checking for CVMFS
[2025-11-21 05:04:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 05:04:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 05:04:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 05:04:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 05:04:45] 2.12.7.0 245311 2502 44228 153106 0 90 5859964 6144000 4996 130560 0 7457689 99.996 59317 505 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-21 05:04:45] CVMFS is ok
[2025-11-21 05:04:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 05:04:45] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-21 05:04:45] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-21 05:04:45] Further information can be found at the LHC@home message board.
[2025-11-21 05:04:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 05:04:45] Checking for apptainer binary...
[2025-11-21 05:04:45] apptainer is not installed, using version from CVMFS
[2025-11-21 05:04:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 05:04:45] biggy
[2025-11-21 05:04:45] apptainer works
[2025-11-21 05:04:45] Set ATHENA_PROC_NUMBER=4
[2025-11-21 05:04:45] Set ATHENA_CORE_NUMBER=4
[2025-11-21 05:04:45] Starting ATLAS job with PandaID=6891071707
[2025-11-21 05:04:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/single_8TB/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 11:44:35]  *** The last 200 lines of the pilot log: ***
[2025-11-21 11:44:35] 2025-11-21 10:44:00,003 | INFO     | using path: /single_8TB/boinc-client/slots/4/PanDA_Pilot-6891071707/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:44:35] 2025-11-21 10:44:00,176 | INFO     | number of running child processes to parent process 2911862: 1
[2025-11-21 11:44:35] 2025-11-21 10:44:00,176 | INFO     | maximum number of monitored processes: 9
[2025-11-21 11:44:35] 2025-11-21 10:44:00,270 | INFO     | time since job start (23950s) is within the limit (172800.0s)
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | INFO     | job 6891071707 has state=finished
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | INFO     | preparing for final server update for job 6891071707 in state='finished'
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | INFO     | this job has now completed (state=finished)
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | INFO     | log transfer has been attempted: DONE
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | INFO     | job 6891071707 has finished - writing final server update
[2025-11-21 11:44:35] 2025-11-21 10:44:00,926 | INFO     | total number of processed events: 1000 (read)
[2025-11-21 11:44:35] 2025-11-21 10:44:00,930 | INFO     | executing command: lscpu
[2025-11-21 11:44:35] 2025-11-21 10:44:00,951 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-21 11:44:35] 2025-11-21 10:44:02,275 | INFO     | time since job start (23952s) is within the limit (172800.0s)
[2025-11-21 11:44:35] 2025-11-21 10:44:02,681 | INFO     | monitor loop #1801: job 0:6891071707 is in state 'finished'
[2025-11-21 11:44:35] 2025-11-21 10:44:02,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,641 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 11:44:35] 2025-11-21 10:44:03,643 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 5142.928343750001
[2025-11-21 11:44:35] 2025-11-21 10:44:03,646 | INFO     | using path: /single_8TB/boinc-client/slots/4/PanDA_Pilot-6891071707/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,646 | INFO     | extracted standard info from prmon json
[2025-11-21 11:44:35] 2025-11-21 10:44:03,646 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 11:44:35] 2025-11-21 10:44:03,646 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 11:44:35] 2025-11-21 10:44:03,649 | INFO     | fitting pss+swap vs Time
[2025-11-21 11:44:35] 2025-11-21 10:44:03,649 | INFO     | sum of square deviations: 18821458012.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,651 | INFO     | sum of deviations: 504918577346.99994
[2025-11-21 11:44:35] 2025-11-21 10:44:03,651 | INFO     | mean x: 1763709865.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,651 | INFO     | mean y: 2330742.5852417303
[2025-11-21 11:44:35] 2025-11-21 10:44:03,651 | INFO     | intersect: -47312275560.544624
[2025-11-21 11:44:35] 2025-11-21 10:44:03,651 | INFO     | chi2: 15.05152348560889
[2025-11-21 11:44:35] 2025-11-21 10:44:03,651 | INFO     | sum of square deviations: 18112179597.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,653 | INFO     | sum of deviations: 514532934021.50006
[2025-11-21 11:44:35] 2025-11-21 10:44:03,653 | INFO     | mean x: 1763709712.5
[2025-11-21 11:44:35] 2025-11-21 10:44:03,653 | INFO     | mean y: 2332632.18814433
[2025-11-21 11:44:35] 2025-11-21 10:44:03,653 | INFO     | intersect: -50101340880.69776
[2025-11-21 11:44:35] 2025-11-21 10:44:03,653 | INFO     | chi2: 11.551831170061124
[2025-11-21 11:44:35] 2025-11-21 10:44:03,653 | INFO     | current chi2=11.551831170061124 (change=23.25141583769844 %)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,653 | INFO     | right removable region: 387
[2025-11-21 11:44:35] 2025-11-21 10:44:03,654 | INFO     | sum of square deviations: 18112179597.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | sum of deviations: 447524739906.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | mean x: 1763710017.5
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | mean y: 2343014.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | intersect: -43576281117.02563
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | chi2: 13.785318276653367
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | current chi2=13.785318276653367 (change=8.412472067469919 %)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | left removable region: 10
[2025-11-21 11:44:35] 2025-11-21 10:44:03,655 | INFO     | sum of square deviations: 16614964548.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,656 | INFO     | sum of deviations: 410150319957.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,656 | INFO     | mean x: 1763709987.0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,656 | INFO     | mean y: 2340908.6127320956
[2025-11-21 11:44:35] 2025-11-21 10:44:03,656 | INFO     | intersect: -43535893156.80288
[2025-11-21 11:44:35] 2025-11-21 10:44:03,656 | INFO     | chi2: 9.463597441941962
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | current memory leak: 24.69 B/s (using 377 data points, chi2=9.46)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | could have reported an average CPU frequency of 5126 MHz (17 samples)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | ..............................
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . Timing measurements:
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . get job = 0 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . initial setup = 1 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . payload setup = 3 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . stage-in = 0 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . payload execution = 23924 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . stage-out = 3 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | . log creation = 0 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,657 | INFO     | ..............................
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | 
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | job summary report
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | --------------------------------------------------
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | PanDA job id: 6891071707
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | task id: 47483661
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | errors: (none)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 11:44:35] 2025-11-21 10:44:03,687 | INFO     | pilot state: finished 
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | transexitcode: 0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | exeerrorcode: 0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | exeerrordiag: 
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | exitcode: 0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | exitmsg: OK
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | cpuconsumptiontime: 94539 s
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | nevents: 1000
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | neventsw: 0
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | pid: 2911862
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | pgrp: 2911862
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | corecount: 4
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | event service: False
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | sizes: {0: 2298806, 3: 2299068, 11: 2299096, 23931: 2335465, 23935: 2344535, 23940: 2344789}
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | --------------------------------------------------
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | 
[2025-11-21 11:44:35] 2025-11-21 10:44:03,688 | INFO     | executing command: ls -lF /single_8TB/boinc-client/slots/4
[2025-11-21 11:44:35] 2025-11-21 10:44:03,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | job 6891071707 has completed (purged errors)
[2025-11-21 11:44:35] 2025-11-21 10:44:03,702 | INFO     | overall cleanup function is called
[2025-11-21 11:44:35] 2025-11-21 10:44:04,722 | INFO     | --- collectZombieJob: --- 10, [2911862]
[2025-11-21 11:44:35] 2025-11-21 10:44:04,722 | INFO     | zombie collector waiting for pid 2911862
[2025-11-21 11:44:35] 2025-11-21 10:44:04,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 11:44:35] 2025-11-21 10:44:04,722 | INFO     | collected zombie processes
[2025-11-21 11:44:35] 2025-11-21 10:44:04,722 | INFO     | will attempt to kill all subprocesses of pid=2911862
[2025-11-21 11:44:35] 2025-11-21 10:44:04,890 | INFO     | process IDs to be killed: [2911862] (in reverse order)
[2025-11-21 11:44:35] 2025-11-21 10:44:04,951 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 11:44:35] 2025-11-21 10:44:04,951 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 11:44:35] 2025-11-21 10:44:04,955 | INFO     | did not find any defunct processes belonging to 2911862
[2025-11-21 11:44:35] 2025-11-21 10:44:04,959 | INFO     | did not find any defunct processes belonging to 2911862
[2025-11-21 11:44:35] 2025-11-21 10:44:04,961 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 11:44:35] 2025-11-21 10:44:04,961 | INFO     | ready for new job
[2025-11-21 11:44:35] 2025-11-21 10:44:04,961 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 11:44:35] 2025-11-21 10:44:04,962 | INFO     | ***************************************
[2025-11-21 11:44:35] 2025-11-21 10:44:04,962 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 11:44:35] 2025-11-21 10:44:04,962 | INFO     | ***************************************
[2025-11-21 11:44:35] 2025-11-21 10:44:04,962 | INFO     | 
[2025-11-21 11:44:35] 2025-11-21 10:44:04,963 | INFO     | architecture information:
[2025-11-21 11:44:35] 2025-11-21 10:44:04,963 | INFO     | executing command: cat /etc/os-release
[2025-11-21 11:44:35] 2025-11-21 10:44:04,974 | INFO     | cat /etc/os-release:
[2025-11-21 11:44:35] NAME="CentOS Linux"
[2025-11-21 11:44:35] VERSION="7 (Core)"
[2025-11-21 11:44:35] ID="centos"
[2025-11-21 11:44:35] ID_LIKE="rhel fedora"
[2025-11-21 11:44:35] VERSION_ID="7"
[2025-11-21 11:44:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 11:44:35] ANSI_COLOR="0;31"
[2025-11-21 11:44:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 11:44:35] HOME_URL="https://www.centos.org/"
[2025-11-21 11:44:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 11:44:35] 
[2025-11-21 11:44:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 11:44:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 11:44:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 11:44:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 11:44:35] 
[2025-11-21 11:44:35] 2025-11-21 10:44:04,974 | INFO     | ***************************************
[2025-11-21 11:44:35] 2025-11-21 10:44:05,476 | INFO     | executing command: df -mP /single_8TB/boinc-client/slots/4
[2025-11-21 11:44:35] 2025-11-21 10:44:05,490 | INFO     | sufficient remaining disk space (953212207104 B)
[2025-11-21 11:44:35] 2025-11-21 10:44:05,490 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 11:44:35] 2025-11-21 10:44:05,490 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 11:44:35] 2025-11-21 10:44:05,490 | INFO     | update_server=False
[2025-11-21 11:44:35] 2025-11-21 10:44:05,490 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 11:44:35] 2025-11-21 10:44:05,490 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:44:35] 2025-11-21 10:44:05,673 | INFO     | all job control threads have been joined
[2025-11-21 11:44:35] 2025-11-21 10:44:05,941 | INFO     | all payload control threads have been joined
[2025-11-21 11:44:35] 2025-11-21 10:44:06,166 | INFO     | all data control threads have been joined
[2025-11-21 11:44:35] 2025-11-21 10:44:06,198 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 11:44:35] 2025-11-21 10:44:06,198 | INFO     | aborting loop
[2025-11-21 11:44:35] 2025-11-21 10:44:06,332 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 11:44:35] 2025-11-21 10:44:06,495 | INFO     | [job] queue monitor thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:06,495 | INFO     | [job] retrieve thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:06,656 | INFO     | [payload] failed_post thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:06,679 | INFO     | [job] control thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:06,785 | INFO     | [data] copytool_in thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:06,946 | INFO     | [payload] control thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,114 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,171 | INFO     | [data] control thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,203 | INFO     | [job] job monitor thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,204 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,274 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,310 | INFO     | [job] validate thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,382 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:07,976 | INFO     | [payload] validate_post thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:08,337 | INFO     | [data] copytool_out thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:08,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 11:44:35] 2025-11-21 10:44:12,941 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 11:44:35] 2025-11-21 10:44:29,290 | INFO     | [monitor] cgroup control has ended
[2025-11-21 11:44:35] 2025-11-21 10:44:29,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130980358883136)>', '<ExcThread(monitor, started 130978785785600)>']
[2025-11-21 11:44:35] 2025-11-21 10:44:34,908 | INFO     | all workflow threads have been joined
[2025-11-21 11:44:35] 2025-11-21 10:44:34,908 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 11:44:35] 2025-11-21 10:44:34,908 | INFO     | traces error code: 0
[2025-11-21 11:44:35] 2025-11-21 10:44:34,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 11:44:35] 2025-11-21 10:44:35,516 | INFO     | PID=2905170 has CPU usage=7.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 11:44:35] 2025-11-21 10:44:35,517 | INFO     | .. there are 7 such processes running
[2025-11-21 11:44:35] 2025-11-21 10:44:35,517 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 11:44:35] 2025-11-21 10:44:35,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 11:44:35] 2025-11-21 10:44:35,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 11:44:35] 2025-11-21 10:44:35,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 11:44:35] 2025-11-21 10:44:35,517 | INFO     | [monitor] control thread has ended
[2025-11-21 11:44:35] 2025-11-21 10:44:35,597 [wrapper] ==== pilot stdout END ====
[2025-11-21 11:44:35] 2025-11-21 10:44:35,598 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 11:44:35] 2025-11-21 10:44:35,604 [wrapper] pilotpid: 2905170
[2025-11-21 11:44:35] 2025-11-21 10:44:35,605 [wrapper] Pilot exit status: 0
[2025-11-21 11:44:35] 2025-11-21 10:44:35,614 [wrapper] pandaids: 6891071707
[2025-11-21 11:44:35] 2025-11-21 10:44:35,649 [wrapper] cleanup supervisor_pilot 3301584 2905171
[2025-11-21 11:44:35] 2025-11-21 10:44:35,652 [wrapper] Test setup, not cleaning
[2025-11-21 11:44:35] 2025-11-21 10:44:35,654 [wrapper] apfmon messages muted
[2025-11-21 11:44:35] 2025-11-21 10:44:35,656 [wrapper] ==== wrapper stdout END ====
[2025-11-21 11:44:35] 2025-11-21 10:44:35,658 [wrapper] ==== wrapper stderr END ====
[2025-11-21 11:44:35]  *** Error codes and diagnostics ***
[2025-11-21 11:44:35]     "exeErrorCode": 0,
[2025-11-21 11:44:35]     "exeErrorDiag": "",
[2025-11-21 11:44:35]     "pilotErrorCode": 0,
[2025-11-21 11:44:35]     "pilotErrorDiag": "",
[2025-11-21 11:44:35]  *** Listing of results directory ***
[2025-11-21 11:44:35] total 1312328
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc    576529 Nov 18 06:55 pilot3.tar.gz
[2025-11-21 11:44:35] -rwx------ 1 boinc boinc     36292 Nov 18 06:59 runpilot2-wrapper.sh
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc      5112 Nov 18 06:59 queuedata.json
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc       100 Nov 21 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 11:44:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 05:04 run_atlas
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc       105 Nov 21 05:04 job.xml
[2025-11-21 11:44:35] -rw-r--r-- 2 boinc boinc 410405260 Nov 21 05:04 EVNT.47483658._000162.pool.root.1
[2025-11-21 11:44:35] -rw-r--r-- 2 boinc boinc    590100 Nov 21 05:04 input.tar.gz
[2025-11-21 11:44:35] drwxrwx--x 2 boinc boinc         5 Nov 21 05:04 shared
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:04 boinc_setup_complete
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc      6806 Nov 21 05:04 init_data.xml
[2025-11-21 11:44:35] -rw-r--r-- 2 boinc boinc     15120 Nov 21 05:04 start_atlas.sh
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc         0 Nov 21 05:04 boinc_lockfile
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc      2773 Nov 21 05:04 pandaJob.out
[2025-11-21 11:44:35] -rw------- 1 boinc boinc    989817 Nov 21 05:04 agis_schedconf.cvmfs.json
[2025-11-21 11:44:35] drwx------ 5 boinc boinc        22 Nov 21 05:04 pilot3
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc       532 Nov 21 11:40 boinc_task_state.xml
[2025-11-21 11:44:35] -rw------- 1 boinc boinc 923648700 Nov 21 11:43 HITS.47483661._001612.pool.root.1
[2025-11-21 11:44:35] -rw------- 1 boinc boinc        95 Nov 21 11:43 pilot_heartbeat.json
[2025-11-21 11:44:35] -rw------- 1 boinc boinc      1063 Nov 21 11:43 memory_monitor_summary.json
[2025-11-21 11:44:35] -rw------- 1 boinc boinc   1526164 Nov 21 11:43 agis_ddmendpoints.agis.ALL.json
[2025-11-21 11:44:35] -rw------- 1 boinc boinc   1246844 Nov 21 11:43 log.47483661._001612.job.log.tgz.1
[2025-11-21 11:44:35] -rw------- 1 boinc boinc      8600 Nov 21 11:44 heartbeat.json
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc      8192 Nov 21 11:44 boinc_mmap_file
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc        28 Nov 21 11:44 wrapper_checkpoint.txt
[2025-11-21 11:44:35] -rw------- 1 boinc boinc       822 Nov 21 11:44 pilotlog.txt
[2025-11-21 11:44:35] -rw------- 1 boinc boinc   3473109 Nov 21 11:44 log.47483661._001612.job.log.1
[2025-11-21 11:44:35] -rw------- 1 boinc boinc       353 Nov 21 11:44 output.list
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc       620 Nov 21 11:44 runtime_log
[2025-11-21 11:44:35] -rw------- 1 boinc boinc   4741120 Nov 21 11:44 result.tar.gz
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc      8806 Nov 21 11:44 runtime_log.err
[2025-11-21 11:44:35] -rw------- 1 boinc boinc       661 Nov 21 11:44 mX6KDmtvTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVJKODmDhnVmn.diag
[2025-11-21 11:44:35] -rw-r--r-- 1 boinc boinc     21856 Nov 21 11:44 stderr.txt
[2025-11-21 11:44:35] HITS file was successfully produced:
[2025-11-21 11:44:35] -rw------- 1 boinc boinc 923648700 Nov 21 11:43 shared/HITS.pool.root.1
[2025-11-21 11:44:35]  *** Contents of shared directory: ***
[2025-11-21 11:44:35] total 1304416
[2025-11-21 11:44:35] -rw-r--r-- 2 boinc boinc 410405260 Nov 21 05:04 ATLAS.root_0
[2025-11-21 11:44:35] -rw-r--r-- 2 boinc boinc    590100 Nov 21 05:04 input.tar.gz
[2025-11-21 11:44:35] -rw-r--r-- 2 boinc boinc     15120 Nov 21 05:04 start_atlas.sh
[2025-11-21 11:44:35] -rw------- 1 boinc boinc 923648700 Nov 21 11:43 HITS.pool.root.1
[2025-11-21 11:44:35] -rw------- 1 boinc boinc   4741120 Nov 21 11:44 result.tar.gz
11:44:37 (2901321): run_atlas exited; CPU time 94586.386680
11:44:37 (2901321): called boinc_finish(0)

</stderr_txt>
]]>

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