Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 15:18:16 (2464): vboxwrapper version 26210
2025-11-23 15:18:16 (2464): BOINC client version: 8.0.2
2025-11-23 15:18:16 (2464): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-23 15:18:17 (2464): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 15:18:17 (2464): Create VM. (boinc_ab22976d3be70275, slot#8)
2025-11-23 15:18:18 (2464): Setting Memory Size for VM. (4700MB)
2025-11-23 15:18:18 (2464): Setting CPU Count for VM. (7)
2025-11-23 15:18:18 (2464): Setting Chipset Options for VM.
2025-11-23 15:18:19 (2464): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 15:18:19 (2464): Setting Boot Options for VM.
2025-11-23 15:18:20 (2464): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 15:18:20 (2464): Enabling VM Network Access.
2025-11-23 15:18:20 (2464): Disabling USB Support for VM.
2025-11-23 15:18:20 (2464): Disabling COM Port Support for VM.
2025-11-23 15:18:21 (2464): Disabling LPT Port Support for VM.
2025-11-23 15:18:21 (2464): Disabling Audio Support for VM.
2025-11-23 15:18:21 (2464): Disabling Clipboard Support for VM.
2025-11-23 15:18:21 (2464): Disabling Drag and Drop Support for VM.
2025-11-23 15:18:22 (2464): Adding storage controller(s) to VM.
2025-11-23 15:18:22 (2464): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 15:18:22 (2464): Adding VirtualBox Guest Additions to VM.
2025-11-23 15:18:23 (2464): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 15:18:23 (2464): forwarding host port 62443 to guest port 80
2025-11-23 15:18:23 (2464): Enabling remote desktop for VM.
2025-11-23 15:18:24 (2464): Required extension pack not installed, remote desktop not enabled.
2025-11-23 15:18:24 (2464): Enabling shared directory for VM.
2025-11-23 15:18:24 (2464): Starting VM using VBoxManage interface. (boinc_ab22976d3be70275, slot#8)
2025-11-23 15:18:27 (2464): Successfully started VM. (PID = '9692')
2025-11-23 15:18:27 (2464): Reporting VM Process ID to BOINC.
2025-11-23 15:18:27 (2464): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-23 15:18:27 (2464): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 15:18:27 (2464): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 15:18:27 (2464): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 15:18:27 (2464): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 15:18:27 (2464): Detected: Web Application Enabled (http://localhost:62443)
2025-11-23 15:18:27 (2464): Preference change detected
2025-11-23 15:18:27 (2464): Setting CPU throttle for VM. (100%)
2025-11-23 15:18:28 (2464): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 15:18:29 (2464): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 15:18:29 (2464): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 15:18:32 (2464): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 15:18:32 (2464): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 15:18:32 (2464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 15:18:37 (2464): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 15:18:37 (2464): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-23 15:18:44 (2464): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000140 main     Log opened 2025-11-23T15:18:43.467412000Z
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000215 main     OS Product: Linux
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000235 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000252 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000269 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000269 main     Process ID: 1354
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000270 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 15:18:44 (2464): Guest Log: 00:00:00.000924 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 15:18:44 (2464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 15:18:44 (2464): Guest Log: [INFO] Mounting shared directory
2025-11-23 15:18:44 (2464): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 15:18:46 (2464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 15:18:46 (2464): Guest Log: [INFO] Detected branch: prod
2025-11-23 15:18:46 (2464): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 15:18:46 (2464): Guest Log: Copying input files
2025-11-23 15:18:48 (2464): Guest Log: Copied input files into RunAtlas.
2025-11-23 15:18:48 (2464): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 15:18:48 (2464): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 15:18:48 (2464): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 15:18:48 (2464): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 15:18:53 (2464): Guest Log: 00:00:10.007272 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 043 811 000ns (GuestNow=1 763 907 534 425 838 000 ns GuestLast=1 763 911 123 469 649 000 ns fSetTimeLastLoop=true )
2025-11-23 15:18:55 (2464): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 15:18:55 (2464): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 15:18:55 (2464): Guest Log: 2.6.3.0 1629 0 30116 153211 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 15:18:56 (2464): Guest Log: copied the webapp to /var/www
2025-11-23 15:18:56 (2464): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-23 15:18:56 (2464): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-23 15:18:57 (2464): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 15:18:57 (2464): Guest Log:  *** Starting ATLAS job. (PandaID=6890967583 taskID=47483661) ***
2025-11-23 16:58:30 (2464): Status Report: Elapsed Time: '6000.000000'
2025-11-23 16:58:30 (2464): Status Report: CPU Time: '39349.546875'
2025-11-23 18:38:33 (2464): Status Report: Elapsed Time: '12000.000000'
2025-11-23 18:38:33 (2464): Status Report: CPU Time: '81033.296875'
2025-11-23 20:18:35 (2464): Status Report: Elapsed Time: '18000.000000'
2025-11-23 20:18:35 (2464): Status Report: CPU Time: '122721.687500'
2025-11-23 21:58:38 (2464): Status Report: Elapsed Time: '24000.000000'
2025-11-23 21:58:38 (2464): Status Report: CPU Time: '164423.750000'
2025-11-23 23:38:40 (2464): Status Report: Elapsed Time: '30000.000000'
2025-11-23 23:38:40 (2464): Status Report: CPU Time: '206153.234375'
2025-11-24 00:11:34 (2464): Guest Log:  *** Job finished ***
2025-11-24 00:11:34 (2464): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:04,961 | INFO     | [job] create_data_payload thread has finished
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:06,954 | INFO     | [data] queue_monitor thread has finished
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:23,626 | INFO     | [monitor] cgroup control has ended
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:24,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659876767552)>', '<ExcThread(monitor, started 140658702546688)>']
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:24,574 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:24,575 | INFO     | [monitor] control thread has ended
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,074 | INFO     | all workflow threads have been joined
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,075 | INFO     | end of generic workflow (traces error code: 0)
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,075 | INFO     | traces error code: 0
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,210 [wrapper] ==== pilot stdout END ====
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,216 [wrapper] ==== wrapper stdout RESUME ====
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,247 [wrapper] pilotpid: 6050
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,256 [wrapper] Pilot exit status: 0
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,274 [wrapper] pandaids: 6890967583
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,304 [wrapper] cleanup supervisor_pilot 12221 6051
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,309 [wrapper] Test setup, not cleaning
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,313 [wrapper] apfmon messages muted
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,319 [wrapper] ==== wrapper stdout END ====
2025-11-24 00:11:34 (2464): Guest Log: 2025-11-23 23:23:29,323 [wrapper] ==== wrapper stderr END ====
2025-11-24 00:11:34 (2464): Guest Log:  *** Error codes and diagnostics ***
2025-11-24 00:11:34 (2464): Guest Log:     "exeErrorCode": 0,
2025-11-24 00:11:34 (2464): Guest Log:     "exeErrorDiag": "",
2025-11-24 00:11:34 (2464): Guest Log:     "pilotErrorCode": 0,
2025-11-24 00:11:34 (2464): Guest Log:     "pilotErrorDiag": "",
2025-11-24 00:11:34 (2464): Guest Log:  *** Listing of results directory ***
2025-11-24 00:11:34 (2464): Guest Log: total 928072
2025-11-24 00:11:34 (2464): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 03:56 pilot3.tar.gz
2025-11-24 00:11:34 (2464): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 04:00 runpilot2-wrapper.sh
2025-11-24 00:11:34 (2464): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 04:00 queuedata.json
2025-11-24 00:11:34 (2464): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 23 14:18 start_atlas.sh
2025-11-24 00:11:34 (2464): Guest Log: -rwxr-xr-x. 1 atlas atlas    590099 Nov 23 14:18 input.tar.gz
2025-11-24 00:11:34 (2464): Guest Log: -rwxr-xr-x. 1 atlas atlas      9126 Nov 23 14:18 init_data.xml
2025-11-24 00:11:34 (2464): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 14:18 EVNT.47483658._000093.pool.root.1 -> /data/./ATLAS.root_0
2025-11-24 00:11:34 (2464): Guest Log: -rw-r--r--. 1 atlas atlas      2771 Nov 23 14:18 pandaJob.out
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas    989785 Nov 23 14:19 agis_schedconf.cvmfs.json
2025-11-24 00:11:34 (2464): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 14:19 pilot3
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas 933936356 Nov 23 23:22 HITS.47483661._000923.pool.root.1
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 23 23:22 memory_monitor_summary.json
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 23 23:22 agis_ddmendpoints.agis.ALL.json
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas   1711237 Nov 23 23:22 log.47483661._000923.job.log.tgz.1
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas        95 Nov 23 23:22 pilot_heartbeat.json
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas      8632 Nov 23 23:23 heartbeat.json
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 23 23:23 pilotlog.txt
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas   4568220 Nov 23 23:23 log.47483661._000923.job.log.1
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas       353 Nov 23 23:23 output.list
2025-11-24 00:11:34 (2464): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 23 23:23 runtime_log
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas   6297600 Nov 23 23:23 result.tar.gz
2025-11-24 00:11:34 (2464): Guest Log: -rw-r--r--. 1 atlas atlas      8634 Nov 23 23:23 runtime_log.err
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas       660 Nov 23 23:23 4r0KDmD4Rf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmd2qMDmFLgCwn.diag
2025-11-24 00:11:34 (2464): Guest Log: Looking for outputfile HITS.47483661._000923.pool.root.1
2025-11-24 00:11:34 (2464): Guest Log: HITS file was successfully produced
2025-11-24 00:11:34 (2464): Guest Log: -rw-------. 1 atlas atlas 933936356 Nov 23 23:22 /home/atlas/RunAtlas/HITS.47483661._000923.pool.root.1
2025-11-24 00:11:39 (2464): Guest Log: Successfully finished the ATLAS job!
2025-11-24 00:11:39 (2464): Guest Log: Copying the results back to the shared directory!
2025-11-24 00:11:39 (2464): Guest Log:  *** Contents of shared directory: ***
2025-11-24 00:11:40 (2464): Guest Log: total 1320008
2025-11-24 00:11:40 (2464): Guest Log: -rwxrwxrwx. 1 root root 410826056 Nov 23 14:18 ATLAS.root_0
2025-11-24 00:11:40 (2464): Guest Log: -rwxrwxrwx. 1 root root 933936356 Nov 23 23:11 HITS.pool.root.1
2025-11-24 00:11:40 (2464): Guest Log: -rwxrwxrwx. 1 root root      9126 Nov 23 14:18 init_data.xml
2025-11-24 00:11:40 (2464): Guest Log: -rwxrwxrwx. 1 root root    590099 Nov 20 06:35 input.tar.gz
2025-11-24 00:11:40 (2464): Guest Log: -rwxrwxrwx. 1 root root   6297600 Nov 23 23:11 result.tar.gz
2025-11-24 00:11:40 (2464): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 20 06:35 start_atlas.sh
2025-11-24 00:11:40 (2464): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-24 00:11:40 (2464): VM Completion File Detected.
2025-11-24 00:11:40 (2464): Powering off VM.
2025-11-24 00:11:42 (2464): Successfully stopped VM.
2025-11-24 00:11:42 (2464): Deregistering VM. (boinc_ab22976d3be70275, slot#8)
2025-11-24 00:11:42 (2464): Removing network bandwidth throttle group from VM.
2025-11-24 00:11:42 (2464): Removing VM from VirtualBox.
2025-11-24 00:11:48 (2464): called boinc_finish(0)

</stderr_txt>
]]>

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