Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-23 13:38:33 (11280): vboxwrapper version 26210
2025-11-23 13:38:33 (11280): BOINC client version: 8.0.2
2025-11-23 13:38:34 (11280): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-23 13:38:34 (11280): Successfully copied 'init_data.xml' to the shared directory.
2025-11-23 13:38:34 (11280): Create VM. (boinc_4fe7d256d5e7f435, slot#6)
2025-11-23 13:38:35 (11280): Setting Memory Size for VM. (4700MB)
2025-11-23 13:38:35 (11280): Setting CPU Count for VM. (7)
2025-11-23 13:38:35 (11280): Setting Chipset Options for VM.
2025-11-23 13:38:36 (11280): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-23 13:38:36 (11280): Setting Boot Options for VM.
2025-11-23 13:38:36 (11280): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-23 13:38:37 (11280): Enabling VM Network Access.
2025-11-23 13:38:37 (11280): Disabling USB Support for VM.
2025-11-23 13:38:37 (11280): Disabling COM Port Support for VM.
2025-11-23 13:38:37 (11280): Disabling LPT Port Support for VM.
2025-11-23 13:38:38 (11280): Disabling Audio Support for VM.
2025-11-23 13:38:38 (11280): Disabling Clipboard Support for VM.
2025-11-23 13:38:38 (11280): Disabling Drag and Drop Support for VM.
2025-11-23 13:38:38 (11280): Adding storage controller(s) to VM.
2025-11-23 13:38:39 (11280): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-23 13:38:39 (11280): Adding VirtualBox Guest Additions to VM.
2025-11-23 13:38:39 (11280): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-23 13:38:40 (11280): forwarding host port 61878 to guest port 80
2025-11-23 13:38:40 (11280): Enabling remote desktop for VM.
2025-11-23 13:38:40 (11280): Required extension pack not installed, remote desktop not enabled.
2025-11-23 13:38:40 (11280): Enabling shared directory for VM.
2025-11-23 13:38:41 (11280): Starting VM using VBoxManage interface. (boinc_4fe7d256d5e7f435, slot#6)
2025-11-23 13:38:44 (11280): Successfully started VM. (PID = '3284')
2025-11-23 13:38:44 (11280): Reporting VM Process ID to BOINC.
2025-11-23 13:38:44 (11280): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-23 13:38:44 (11280): Guest Log: CPUID EDX: 0x178bfbff
2025-11-23 13:38:44 (11280): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-23 13:38:44 (11280): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-23 13:38:44 (11280): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-23 13:38:44 (11280): Detected: Web Application Enabled (http://localhost:61878)
2025-11-23 13:38:44 (11280): Preference change detected
2025-11-23 13:38:44 (11280): Setting CPU throttle for VM. (100%)
2025-11-23 13:38:45 (11280): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-23 13:38:46 (11280): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-23 13:38:46 (11280): Guest Log: BIOS: Booting from Hard Disk...
2025-11-23 13:38:49 (11280): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-23 13:38:49 (11280): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-23 13:38:49 (11280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-23 13:39:49 (11280): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-23 13:39:49 (11280): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-23 13:39:54 (11280): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.000136 main     Log opened 2025-11-23T13:39:59.174546000Z
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.000220 main     OS Product: Linux
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.000240 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.000257 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.000274 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.000274 main     Process ID: 1354
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.000275 main     Package type: LINUX_64BITS_GENERIC
2025-11-23 13:39:54 (11280): Guest Log: 00:00:00.001459 main     5.2.32 r132073 started. Verbose level = 0
2025-11-23 13:39:54 (11280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-23 13:39:54 (11280): Guest Log: [INFO] Mounting shared directory
2025-11-23 13:39:54 (11280): Guest Log: [INFO] Checking for init_data.xml
2025-11-23 13:40:03 (11280): Guest Log: 00:00:10.016909 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 652 492 705 000ns (GuestNow=1 763 901 546 684 757 000 ns GuestLast=1 763 905 199 177 462 000 ns fSetTimeLastLoop=true )
2025-11-23 13:40:44 (11280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-23 13:40:44 (11280): Guest Log: [INFO] Detected branch: prod
2025-11-23 13:40:44 (11280): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-23 13:40:44 (11280): Guest Log: Copying input files
2025-11-23 13:40:47 (11280): Guest Log: Copied input files into RunAtlas.
2025-11-23 13:40:47 (11280): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-23 13:40:47 (11280): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-23 13:40:47 (11280): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-23 13:40:47 (11280): Guest Log: Further information can be found at the LHC@home message board.
2025-11-23 13:40:54 (11280): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-23 13:40:55 (11280): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-23 13:40:55 (11280): Guest Log: 2.6.3.0 1670 0 32180 153209 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-23 13:40:55 (11280): Guest Log: copied the webapp to /var/www
2025-11-23 13:40:56 (11280): Guest Log: ATHENA_PROC_NUMBER=7
2025-11-23 13:40:56 (11280): Guest Log: ATHENA_CORE_NUMBER=7
2025-11-23 13:40:56 (11280): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-23 13:40:56 (11280): Guest Log:  *** Starting ATLAS job. (PandaID=6891071922 taskID=47483661) ***
2025-11-23 15:18:47 (11280): Status Report: Elapsed Time: '6000.000000'
2025-11-23 15:18:47 (11280): Status Report: CPU Time: '38820.796875'
2025-11-23 16:58:49 (11280): Status Report: Elapsed Time: '12000.000000'
2025-11-23 16:58:49 (11280): Status Report: CPU Time: '80504.890625'
2025-11-23 18:38:52 (11280): Status Report: Elapsed Time: '18000.000000'
2025-11-23 18:38:52 (11280): Status Report: CPU Time: '122191.687500'
2025-11-23 20:18:55 (11280): Status Report: Elapsed Time: '24000.000000'
2025-11-23 20:18:55 (11280): Status Report: CPU Time: '163868.343750'
2025-11-23 21:58:57 (11280): Status Report: Elapsed Time: '30000.000000'
2025-11-23 21:58:57 (11280): Status Report: CPU Time: '205560.265625'
2025-11-23 22:23:32 (11280): Guest Log:  *** Job finished ***
2025-11-23 22:23:32 (11280): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:22,215 | INFO     | end of generic workflow (traces error code: 0)
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:22,215 | INFO     | traces error code: 0
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:22,215 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:32,863 | INFO     | PID=6083 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:32,863 | INFO     | found 0 job(s) in 20 queues
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:32,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:32,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:32,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:32,863 | CRITICAL | thread 'MainThread' is not alive
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:32,863 | INFO     | [monitor] control thread has ended
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,120 [wrapper] ==== pilot stdout END ====
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,124 [wrapper] ==== wrapper stdout RESUME ====
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,129 [wrapper] pilotpid: 6083
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,134 [wrapper] Pilot exit status: 0
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,151 [wrapper] pandaids: 6891071922
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,181 [wrapper] cleanup supervisor_pilot 13985 6084
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,190 [wrapper] Test setup, not cleaning
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,195 [wrapper] apfmon messages muted
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,200 [wrapper] ==== wrapper stdout END ====
2025-11-23 22:23:32 (11280): Guest Log: 2025-11-23 21:33:33,204 [wrapper] ==== wrapper stderr END ====
2025-11-23 22:23:32 (11280): Guest Log:  *** Error codes and diagnostics ***
2025-11-23 22:23:32 (11280): Guest Log:     "exeErrorCode": 0,
2025-11-23 22:23:32 (11280): Guest Log:     "exeErrorDiag": "",
2025-11-23 22:23:32 (11280): Guest Log:     "pilotErrorCode": 0,
2025-11-23 22:23:32 (11280): Guest Log:     "pilotErrorDiag": "",
2025-11-23 22:23:32 (11280): Guest Log:  *** Listing of results directory ***
2025-11-23 22:23:32 (11280): Guest Log: total 916108
2025-11-23 22:23:32 (11280): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 05:55 pilot3.tar.gz
2025-11-23 22:23:32 (11280): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 05:57 runpilot2-wrapper.sh
2025-11-23 22:23:32 (11280): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 05:57 queuedata.json
2025-11-23 22:23:32 (11280): Guest Log: -rwxr-xr-x. 1 atlas atlas      9126 Nov 23 12:39 init_data.xml
2025-11-23 22:23:32 (11280): Guest Log: -rwxr-xr-x. 1 atlas atlas    590093 Nov 23 12:39 input.tar.gz
2025-11-23 22:23:32 (11280): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 23 12:39 start_atlas.sh
2025-11-23 22:23:32 (11280): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 23 12:39 EVNT.47483658._000170.pool.root.1 -> /data/./ATLAS.root_0
2025-11-23 22:23:32 (11280): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 23 12:40 pandaJob.out
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas    989784 Nov 23 12:40 agis_schedconf.cvmfs.json
2025-11-23 22:23:32 (11280): Guest Log: drwx------. 5 atlas atlas      4096 Nov 23 12:40 pilot3
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas 921995317 Nov 23 21:32 HITS.47483661._001697.pool.root.1
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas      1038 Nov 23 21:32 memory_monitor_summary.json
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas   1526164 Nov 23 21:32 agis_ddmendpoints.agis.ALL.json
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas   1694367 Nov 23 21:32 log.47483661._001697.job.log.tgz.1
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas        95 Nov 23 21:32 pilot_heartbeat.json
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas      8637 Nov 23 21:33 heartbeat.json
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas       814 Nov 23 21:33 pilotlog.txt
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas   4434835 Nov 23 21:33 log.47483661._001697.job.log.1
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas       353 Nov 23 21:33 output.list
2025-11-23 22:23:32 (11280): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 23 21:33 runtime_log
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas   6144000 Nov 23 21:33 result.tar.gz
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas       660 Nov 23 21:33 tVcLDmwtTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdGKODmAPAlcn.diag
2025-11-23 22:23:32 (11280): Guest Log: -rw-r--r--. 1 atlas atlas      8634 Nov 23 21:33 runtime_log.err
2025-11-23 22:23:32 (11280): Guest Log: Looking for outputfile HITS.47483661._001697.pool.root.1
2025-11-23 22:23:32 (11280): Guest Log: HITS file was successfully produced
2025-11-23 22:23:32 (11280): Guest Log: -rw-------. 1 atlas atlas 921995317 Nov 23 21:32 /home/atlas/RunAtlas/HITS.47483661._001697.pool.root.1
2025-11-23 22:23:37 (11280): Guest Log: Successfully finished the ATLAS job!
2025-11-23 22:23:37 (11280): Guest Log: Copying the results back to the shared directory!
2025-11-23 22:23:38 (11280): Guest Log:  *** Contents of shared directory: ***
2025-11-23 22:23:38 (11280): Guest Log: total 1306228
2025-11-23 22:23:38 (11280): Guest Log: -rwxrwxrwx. 1 root root 408813300 Nov 23 12:38 ATLAS.root_0
2025-11-23 22:23:38 (11280): Guest Log: -rwxrwxrwx. 1 root root 921995317 Nov 23 21:23 HITS.pool.root.1
2025-11-23 22:23:38 (11280): Guest Log: -rwxrwxrwx. 1 root root      9126 Nov 23 12:38 init_data.xml
2025-11-23 22:23:38 (11280): Guest Log: -rwxrwxrwx. 1 root root    590093 Nov 20 06:21 input.tar.gz
2025-11-23 22:23:38 (11280): Guest Log: -rwxrwxrwx. 1 root root   6144000 Nov 23 21:23 result.tar.gz
2025-11-23 22:23:38 (11280): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 20 06:21 start_atlas.sh
2025-11-23 22:23:38 (11280): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-23 22:23:38 (11280): VM Completion File Detected.
2025-11-23 22:23:38 (11280): Powering off VM.
2025-11-23 22:23:39 (11280): Successfully stopped VM.
2025-11-23 22:23:39 (11280): Deregistering VM. (boinc_4fe7d256d5e7f435, slot#6)
2025-11-23 22:23:39 (11280): Removing network bandwidth throttle group from VM.
2025-11-23 22:23:39 (11280): Removing VM from VirtualBox.
2025-11-23 22:23:44 (11280): called boinc_finish(0)

</stderr_txt>
]]>

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