Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:55:29 (24281): wrapper (7.7.26015): starting
01:55:29 (24281): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:55:29] Arguments: --nthreads 8
[2025-11-23 01:55:29] Threads: 8
[2025-11-23 01:55:29] Checking for CVMFS
[2025-11-23 01:55:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:55:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:55:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:55:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:55:30] 2.11.2.0 21664 167162 141612 153191 0 230 13472932 25165825 4364 130560 2 55836789 99.880 30922510 2561 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 01:55:30] CVMFS is ok
[2025-11-23 01:55:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:55:30] Checking for apptainer binary...
[2025-11-23 01:55:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:55:30] Running /usr/bin/apptainer --version
[2025-11-23 01:55:31] apptainer version 1.3.2-1.el7
[2025-11-23 01:55:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:55:36] cg-vwn258.simple-grid.lan
[2025-11-23 01:55:36] apptainer works
[2025-11-23 01:55:36] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:55:36] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:55:37] Starting ATLAS job with PandaID=6890968815
[2025-11-23 01:55:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:00:31]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:00:32] 2025-11-24 01:59:26,986 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:00:32] 2025-11-24 01:59:27,379 | INFO     | time since job start (90042s) is within the limit (172800.0s)
[2025-11-24 03:00:32] 2025-11-24 01:59:29,390 | INFO     | time since job start (90044s) is within the limit (172800.0s)
[2025-11-24 03:00:32] 2025-11-24 01:59:29,490 | INFO     | monitor loop #6055: job 0:6890968815 is in state 'finished'
[2025-11-24 03:00:32] 2025-11-24 01:59:29,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:00:32] 2025-11-24 01:59:30,304 [wrapper] supervise_pilot (15 min periods counter: 101)
[2025-11-24 03:00:32] 2025-11-24 01:59:31,404 | INFO     | time since job start (90046s) is within the limit (172800.0s)
[2025-11-24 03:00:32] 2025-11-24 01:59:32,000 | INFO     | monitor loop #6056: job 0:6890968815 is in state 'finished'
[2025-11-24 03:00:32] 2025-11-24 01:59:32,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:00:32] 2025-11-24 01:59:33,420 | INFO     | time since job start (90048s) is within the limit (172800.0s)
[2025-11-24 03:00:32] 2025-11-24 01:59:34,505 | INFO     | monitor loop #6057: job 0:6890968815 is in state 'finished'
[2025-11-24 03:00:32] 2025-11-24 01:59:34,506 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:00:32] 2025-11-24 01:59:35,427 | INFO     | time since job start (90050s) is within the limit (172800.0s)
[2025-11-24 03:00:32] 2025-11-24 01:59:37,010 | INFO     | monitor loop #6058: job 0:6890968815 is in state 'finished'
[2025-11-24 03:00:32] 2025-11-24 01:59:37,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:00:32] 2025-11-24 01:59:37,436 | INFO     | time since job start (90052s) is within the limit (172800.0s)
[2025-11-24 03:00:32] 2025-11-24 01:59:38,564 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:00:32] 2025-11-24 01:59:38,565 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:00:32] 2025-11-24 01:59:38,568 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6890968815/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:00:32] 2025-11-24 01:59:38,569 | INFO     | extracted standard info from prmon json
[2025-11-24 03:00:32] 2025-11-24 01:59:38,569 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:00:32] 2025-11-24 01:59:38,569 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:00:32] 2025-11-24 01:59:38,600 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:00:32] 2025-11-24 01:59:38,603 | INFO     | sum of square deviations: 978969556712.1813
[2025-11-24 03:00:32] 2025-11-24 01:59:38,673 | INFO     | sum of deviations: 2468910258317.604
[2025-11-24 03:00:32] 2025-11-24 01:59:38,673 | INFO     | mean x: 1763904751.2869802
[2025-11-24 03:00:32] 2025-11-24 01:59:38,673 | INFO     | mean y: 2855205.5971370144
[2025-11-24 03:00:32] 2025-11-24 01:59:38,673 | INFO     | intersect: -4445620750.870161
[2025-11-24 03:00:32] 2025-11-24 01:59:38,675 | INFO     | chi2: 16.300326548264028
[2025-11-24 03:00:32] 2025-11-24 01:59:38,678 | INFO     | sum of square deviations: 968994308291.3713
[2025-11-24 03:00:32] 2025-11-24 01:59:38,744 | INFO     | sum of deviations: 2953813969603.3804
[2025-11-24 03:00:32] 2025-11-24 01:59:38,745 | INFO     | mean x: 1763904598.7913816
[2025-11-24 03:00:32] 2025-11-24 01:59:38,745 | INFO     | mean y: 2862617.1094391244
[2025-11-24 03:00:32] 2025-11-24 01:59:38,745 | INFO     | intersect: -5374099869.022044
[2025-11-24 03:00:32] 2025-11-24 01:59:38,747 | INFO     | chi2: 13.071168014528448
[2025-11-24 03:00:32] 2025-11-24 01:59:38,747 | INFO     | current chi2=13.071168014528448 (change=19.81039167635254 %)
[2025-11-24 03:00:32] 2025-11-24 01:59:38,747 | INFO     | right removable region: 1461
[2025-11-24 03:00:32] 2025-11-24 01:59:38,750 | INFO     | sum of square deviations: 968993156611.3712
[2025-11-24 03:00:32] 2025-11-24 01:59:38,828 | INFO     | sum of deviations: 2032943059691.1104
[2025-11-24 03:00:32] 2025-11-24 01:59:38,828 | INFO     | mean x: 1763904903.7913816
[2025-11-24 03:00:32] 2025-11-24 01:59:38,828 | INFO     | mean y: 2861866.9610123117
[2025-11-24 03:00:32] 2025-11-24 01:59:38,828 | INFO     | intersect: -3697802278.756984
[2025-11-24 03:00:32] 2025-11-24 01:59:38,831 | INFO     | chi2: 13.976706219620253
[2025-11-24 03:00:32] 2025-11-24 01:59:38,831 | INFO     | current chi2=13.976706219620253 (change=14.255053858974618 %)
[2025-11-24 03:00:32] 2025-11-24 01:59:38,831 | INFO     | left removable region: 10
[2025-11-24 03:00:32] 2025-11-24 01:59:38,833 | INFO     | sum of square deviations: 947286205980.1621
[2025-11-24 03:00:32] 2025-11-24 01:59:38,902 | INFO     | sum of deviations: 2510805131656.452
[2025-11-24 03:00:32] 2025-11-24 01:59:38,902 | INFO     | mean x: 1763904873.295658
[2025-11-24 03:00:32] 2025-11-24 01:59:38,903 | INFO     | mean y: 2872649.087525844
[2025-11-24 03:00:32] 2025-11-24 01:59:38,903 | INFO     | intersect: -4672400124.51107
[2025-11-24 03:00:32] 2025-11-24 01:59:38,905 | INFO     | chi2: 9.93356522157227
[2025-11-24 03:00:32] 2025-11-24 01:59:38,905 | INFO     | current memory leak: 2.65 B/s (using 1451 data points, chi2=9.93)
[2025-11-24 03:00:32] 2025-11-24 01:59:38,908 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-24 03:00:32] 2025-11-24 01:59:38,908 | INFO     | ..............................
[2025-11-24 03:00:32] 2025-11-24 01:59:38,908 | INFO     | . Timing measurements:
[2025-11-24 03:00:32] 2025-11-24 01:59:38,908 | INFO     | . get job = 0 s
[2025-11-24 03:00:32] 2025-11-24 01:59:38,908 | INFO     | . initial setup = 20 s
[2025-11-24 03:00:32] 2025-11-24 01:59:38,908 | INFO     | . payload setup = 163 s
[2025-11-24 03:00:32] 2025-11-24 01:59:38,908 | INFO     | . stage-in = 0 s
[2025-11-24 03:00:32] 2025-11-24 01:59:38,909 | INFO     | . payload execution = 89580 s
[2025-11-24 03:00:32] 2025-11-24 01:59:38,909 | INFO     | . stage-out = 5 s
[2025-11-24 03:00:32] 2025-11-24 01:59:38,909 | INFO     | . log creation = 2 s
[2025-11-24 03:00:32] 2025-11-24 01:59:38,909 | INFO     | ..............................
[2025-11-24 03:00:32] 2025-11-24 01:59:39,048 | INFO     | 
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | job summary report
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | --------------------------------------------------
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | PanDA job id: 6890968815
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | task id: 47483661
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | errors: (none)
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | pilot state: finished 
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | transexitcode: 0
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | exeerrorcode: 0
[2025-11-24 03:00:32] 2025-11-24 01:59:39,049 | INFO     | exeerrordiag: 
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | exitcode: 0
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | exitmsg: OK
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | cpuconsumptiontime: 335801 s
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | nevents: 1000
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | neventsw: 0
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | pid: 2204
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | pgrp: 2204
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | corecount: 8
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | event service: False
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 34: 2298936, 45: 2299092, 56: 2299120, 67: 2299148, 77: 2299176, 88: 2299232, 94: 2299802, 99
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | --------------------------------------------------
[2025-11-24 03:00:32] 2025-11-24 01:59:39,050 | INFO     | 
[2025-11-24 03:00:32] 2025-11-24 01:59:39,051 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-24 03:00:32] 2025-11-24 01:59:39,358 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,359 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,359 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,359 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,360 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:00:32] 2025-11-24 01:59:39,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:00:32] 2025-11-24 01:59:39,361 | INFO     | job 6890968815 has completed (purged errors)
[2025-11-24 03:00:32] 2025-11-24 01:59:39,361 | INFO     | overall cleanup function is called
[2025-11-24 03:00:32] 2025-11-24 01:59:40,379 | INFO     | --- collectZombieJob: --- 10, [2204]
[2025-11-24 03:00:32] 2025-11-24 01:59:40,380 | INFO     | zombie collector waiting for pid 2204
[2025-11-24 03:00:32] 2025-11-24 01:59:40,380 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:00:32] 2025-11-24 01:59:40,380 | INFO     | collected zombie processes
[2025-11-24 03:00:32] 2025-11-24 01:59:40,380 | INFO     | will attempt to kill all subprocesses of pid=2204
[2025-11-24 03:00:32] 2025-11-24 01:59:40,496 | INFO     | process IDs to be killed: [2204] (in reverse order)
[2025-11-24 03:00:32] 2025-11-24 01:59:41,673 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:00:32] 2025-11-24 01:59:41,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:00:32] 2025-11-24 01:59:41,677 | INFO     | did not find any defunct processes belonging to 2204
[2025-11-24 03:00:32] 2025-11-24 01:59:41,680 | INFO     | did not find any defunct processes belonging to 2204
[2025-11-24 03:00:32] 2025-11-24 01:59:41,698 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:00:32] 2025-11-24 01:59:41,698 | INFO     | ready for new job
[2025-11-24 03:00:32] 2025-11-24 01:59:41,698 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:00:32] 2025-11-24 01:59:41,704 | INFO     | ***************************************
[2025-11-24 03:00:32] 2025-11-24 01:59:41,704 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:00:32] 2025-11-24 01:59:41,705 | INFO     | ***************************************
[2025-11-24 03:00:32] 2025-11-24 01:59:41,705 | INFO     | 
[2025-11-24 03:00:32] 2025-11-24 01:59:41,705 | INFO     | pilot is running in a VM
[2025-11-24 03:00:32] 2025-11-24 01:59:41,705 | INFO     | architecture information:
[2025-11-24 03:00:32] 2025-11-24 01:59:41,709 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:00:32] 2025-11-24 01:59:41,969 | INFO     | cat /etc/os-release:
[2025-11-24 03:00:32] NAME="CentOS Linux"
[2025-11-24 03:00:32] VERSION="7 (Core)"
[2025-11-24 03:00:32] ID="centos"
[2025-11-24 03:00:32] ID_LIKE="rhel fedora"
[2025-11-24 03:00:32] VERSION_ID="7"
[2025-11-24 03:00:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:00:32] ANSI_COLOR="0;31"
[2025-11-24 03:00:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:00:32] HOME_URL="https://www.centos.org/"
[2025-11-24 03:00:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:00:32] 
[2025-11-24 03:00:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:00:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:00:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:00:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:00:32] 
[2025-11-24 03:00:32] 2025-11-24 01:59:41,969 | INFO     | ***************************************
[2025-11-24 03:00:32] 2025-11-24 01:59:42,473 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-24 03:00:32] 2025-11-24 01:59:42,756 | INFO     | sufficient remaining disk space (495058944000 B)
[2025-11-24 03:00:32] 2025-11-24 01:59:42,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:00:32] 2025-11-24 01:59:42,757 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:00:32] 2025-11-24 01:59:42,757 | INFO     | update_server=False
[2025-11-24 03:00:32] 2025-11-24 01:59:42,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:00:32] 2025-11-24 01:59:42,948 | INFO     | all job control threads have been joined
[2025-11-24 03:00:32] 2025-11-24 01:59:43,067 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:00:32] 2025-11-24 01:59:43,068 | INFO     | aborting loop
[2025-11-24 03:00:32] 2025-11-24 01:59:43,116 | INFO     | all data control threads have been joined
[2025-11-24 03:00:32] 2025-11-24 01:59:43,167 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:00:32] 2025-11-24 01:59:43,268 | INFO     | all payload control threads have been joined
[2025-11-24 03:00:32] 2025-11-24 01:59:43,764 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:43,795 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:43,877 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:43,955 | INFO     | [job] control thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:43,972 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:44,074 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:44,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:00:32] 2025-11-24 01:59:44,122 | INFO     | [data] control thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:44,210 | INFO     | [job] validate thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:44,273 | INFO     | [payload] control thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:44,435 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:44,529 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:44,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:00:32] 2025-11-24 01:59:45,061 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:45,084 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:45,174 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:45,208 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:00:32] 2025-11-24 01:59:48,652 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:00:32] 2025-11-24 02:00:10,652 | INFO     | PID=28048 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:00:32] 2025-11-24 02:00:10,653 | INFO     | .. there are 9 such processes running
[2025-11-24 03:00:32] 2025-11-24 02:00:10,654 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:00:32] 2025-11-24 02:00:10,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:00:32] 2025-11-24 02:00:10,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:00:32] 2025-11-24 02:00:21,834 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:00:32] 2025-11-24 02:00:22,875 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140456992700224)>', '<ExcThread(monitor, started 140456545470208)>']
[2025-11-24 03:00:32] 2025-11-24 02:00:23,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:00:32] 2025-11-24 02:00:23,731 | INFO     | [monitor] control thread has ended
[2025-11-24 03:00:32] 2025-11-24 02:00:27,901 | INFO     | all workflow threads have been joined
[2025-11-24 03:00:32] 2025-11-24 02:00:27,902 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:00:32] 2025-11-24 02:00:27,902 | INFO     | traces error code: 0
[2025-11-24 03:00:32] 2025-11-24 02:00:27,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:00:32] 2025-11-24 02:00:28,219 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:00:32] 2025-11-24 02:00:28,250 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:00:32] 2025-11-24 02:00:28,331 [wrapper] pilotpid: 28048
[2025-11-24 03:00:32] 2025-11-24 02:00:28,418 [wrapper] Pilot exit status: 0
[2025-11-24 03:00:32] 2025-11-24 02:00:28,845 [wrapper] pandaids: 6890968815
[2025-11-24 03:00:32] 2025-11-24 02:00:29,584 [wrapper] cleanup supervisor_pilot 25193 28049
[2025-11-24 03:00:32] 2025-11-24 02:00:29,636 [wrapper] Test setup, not cleaning
[2025-11-24 03:00:32] 2025-11-24 02:00:29,725 [wrapper] apfmon messages muted
[2025-11-24 03:00:32] 2025-11-24 02:00:29,810 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:00:32] 2025-11-24 02:00:29,920 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:00:32]  *** Error codes and diagnostics ***
[2025-11-24 03:00:32]     "exeErrorCode": 0,
[2025-11-24 03:00:32]     "exeErrorDiag": "",
[2025-11-24 03:00:32]     "pilotErrorCode": 0,
[2025-11-24 03:00:32]     "pilotErrorDiag": "",
[2025-11-24 03:00:32]  *** Listing of results directory ***
[2025-11-24 03:00:32] total 1326120
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc    576529 Nov 18 04:56 pilot3.tar.gz
[2025-11-24 03:00:32] -rwx------. 1 boinc boinc     36292 Nov 18 05:03 runpilot2-wrapper.sh
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc      5112 Nov 18 05:03 queuedata.json
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc       100 Nov 23 01:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:00:32] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 01:55 run_atlas
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc       105 Nov 23 01:55 job.xml
[2025-11-24 03:00:32] -rw-r--r--. 2 boinc boinc 407857024 Nov 23 01:55 EVNT.47483658._000131.pool.root.1
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc      6390 Nov 23 01:55 init_data.xml
[2025-11-24 03:00:32] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:55 start_atlas.sh
[2025-11-24 03:00:32] drwxrwx--x. 2 boinc boinc        68 Nov 23 01:55 shared
[2025-11-24 03:00:32] -rw-r--r--. 2 boinc boinc    590100 Nov 23 01:55 input.tar.gz
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc         0 Nov 23 01:55 boinc_lockfile
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc      2773 Nov 23 01:55 pandaJob.out
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc    989784 Nov 23 01:58 agis_schedconf.cvmfs.json
[2025-11-24 03:00:32] drwx------. 5 boinc boinc      4096 Nov 23 01:58 pilot3
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc       533 Nov 24 02:31 boinc_task_state.xml
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc 917238506 Nov 24 02:56 HITS.47483661._001309.pool.root.1
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc      1031 Nov 24 02:57 memory_monitor_summary.json
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc   1526164 Nov 24 02:57 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc   2530058 Nov 24 02:57 log.47483661._001309.job.log.tgz.1
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc      8621 Nov 24 02:59 heartbeat.json
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:00 boinc_mmap_file
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:00 wrapper_checkpoint.txt
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc        95 Nov 24 03:00 pilot_heartbeat.json
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc      4884 Nov 24 03:00 pilotlog.txt
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc  11940509 Nov 24 03:00 log.47483661._001309.job.log.1
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc       353 Nov 24 03:00 output.list
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:00 runtime_log
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc  14489600 Nov 24 03:00 result.tar.gz
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc      8703 Nov 24 03:00 runtime_log.err
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc       662 Nov 24 03:00 OnsLDm76Rf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0DKODmOPjcdm.diag
[2025-11-24 03:00:32] -rw-r--r--. 1 boinc boinc     21416 Nov 24 03:00 stderr.txt
[2025-11-24 03:00:32] HITS file was successfully produced:
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc 917238506 Nov 24 02:56 shared/HITS.pool.root.1
[2025-11-24 03:00:32]  *** Contents of shared directory: ***
[2025-11-24 03:00:32] total 1308792
[2025-11-24 03:00:32] -rw-r--r--. 2 boinc boinc 407857024 Nov 23 01:55 ATLAS.root_0
[2025-11-24 03:00:32] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:55 start_atlas.sh
[2025-11-24 03:00:32] -rw-r--r--. 2 boinc boinc    590100 Nov 23 01:55 input.tar.gz
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc 917238506 Nov 24 02:56 HITS.pool.root.1
[2025-11-24 03:00:32] -rw-------. 1 boinc boinc  14489600 Nov 24 03:00 result.tar.gz
03:00:33 (24281): run_atlas exited; CPU time 336336.000789
03:00:33 (24281): called boinc_finish(0)

</stderr_txt>
]]>

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