Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:08:47 (24017): wrapper (7.7.26015): starting
00:08:47 (24017): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 00:08:47] Arguments: --nthreads 8
[2025-11-23 00:08:47] Threads: 8
[2025-11-23 00:08:47] Checking for CVMFS
[2025-11-23 00:08:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 00:08:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 00:08:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 00:08:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 00:08:50] 2.11.2.0 4554 280255 142884 153187 1 85 17391201 25165824 4632 130560 2 123352450 99.849 83193924 3254 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 00:08:50] CVMFS is ok
[2025-11-23 00:08:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 00:08:50] Checking for apptainer binary...
[2025-11-23 00:08:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 00:08:50] Running /usr/bin/apptainer --version
[2025-11-23 00:08:50] apptainer version 1.3.2-1.el7
[2025-11-23 00:08:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 00:08:57] cg-vwn316.simple-grid.lan
[2025-11-23 00:08:57] apptainer works
[2025-11-23 00:08:58] Set ATHENA_PROC_NUMBER=8
[2025-11-23 00:08:58] Set ATHENA_CORE_NUMBER=8
[2025-11-23 00:08:58] Starting ATLAS job with PandaID=6891592046
[2025-11-23 00:08:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:07:18]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:07:18] 2025-11-24 01:06:32,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:07:18] 2025-11-24 01:06:33,051 | INFO     | time since job start (93200s) is within the limit (172800.0s)
[2025-11-24 02:07:18] 2025-11-24 01:06:35,057 | INFO     | time since job start (93202s) is within the limit (172800.0s)
[2025-11-24 02:07:18] 2025-11-24 01:06:35,159 | INFO     | monitor loop #6271: job 0:6891592046 is in state 'finished'
[2025-11-24 02:07:18] 2025-11-24 01:06:35,160 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:07:18] 2025-11-24 01:06:37,069 | INFO     | time since job start (93204s) is within the limit (172800.0s)
[2025-11-24 02:07:18] 2025-11-24 01:06:37,667 | INFO     | monitor loop #6272: job 0:6891592046 is in state 'finished'
[2025-11-24 02:07:18] 2025-11-24 01:06:37,667 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:07:18] 2025-11-24 01:06:38,223 | INFO     | PID=27792 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 02:07:18] 2025-11-24 01:06:38,223 | INFO     | .. there are 9 such processes running
[2025-11-24 02:07:18] 2025-11-24 01:06:39,224 | INFO     | time since job start (93206s) is within the limit (172800.0s)
[2025-11-24 02:07:18] 2025-11-24 01:06:40,175 | INFO     | monitor loop #6273: job 0:6891592046 is in state 'finished'
[2025-11-24 02:07:18] 2025-11-24 01:06:40,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:07:18] 2025-11-24 01:06:40,366 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:07:18] 2025-11-24 01:06:40,367 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 02:07:18] 2025-11-24 01:06:40,369 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6891592046/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:07:18] 2025-11-24 01:06:40,369 | INFO     | extracted standard info from prmon json
[2025-11-24 02:07:18] 2025-11-24 01:06:40,370 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:07:18] 2025-11-24 01:06:40,370 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:07:18] 2025-11-24 01:06:40,411 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:07:18] 2025-11-24 01:06:40,414 | INFO     | sum of square deviations: 1084657726531.2148
[2025-11-24 02:07:18] 2025-11-24 01:06:40,479 | INFO     | sum of deviations: 3236761318428.138
[2025-11-24 02:07:18] 2025-11-24 01:06:40,480 | INFO     | mean x: 1763900000.8083005
[2025-11-24 02:07:18] 2025-11-24 01:06:40,480 | INFO     | mean y: 2833068.1963109355
[2025-11-24 02:07:18] 2025-11-24 01:06:40,480 | INFO     | intersect: -5260876535.800468
[2025-11-24 02:07:18] 2025-11-24 01:06:40,482 | INFO     | chi2: 28.778692246596478
[2025-11-24 02:07:18] 2025-11-24 01:06:40,485 | INFO     | sum of square deviations: 1073975611025.1295
[2025-11-24 02:07:18] 2025-11-24 01:06:40,557 | INFO     | sum of deviations: 3724384242984.7026
[2025-11-24 02:07:18] 2025-11-24 01:06:40,557 | INFO     | mean x: 1763899848.312624
[2025-11-24 02:07:18] 2025-11-24 01:06:40,557 | INFO     | mean y: 2840028.267019167
[2025-11-24 02:07:18] 2025-11-24 01:06:40,557 | INFO     | intersect: -6114096644.985729
[2025-11-24 02:07:18] 2025-11-24 01:06:40,559 | INFO     | chi2: 25.660033862231238
[2025-11-24 02:07:18] 2025-11-24 01:06:40,559 | INFO     | current chi2=25.660033862231238 (change=10.836692500278811 %)
[2025-11-24 02:07:18] 2025-11-24 01:06:40,560 | INFO     | right removable region: 1512
[2025-11-24 02:07:18] 2025-11-24 01:06:40,562 | INFO     | sum of square deviations: 1073974399565.1301
[2025-11-24 02:07:18] 2025-11-24 01:06:40,627 | INFO     | sum of deviations: 2594433100139.3633
[2025-11-24 02:07:18] 2025-11-24 01:06:40,627 | INFO     | mean x: 1763900153.312624
[2025-11-24 02:07:18] 2025-11-24 01:06:40,627 | INFO     | mean y: 2842237.0436219433
[2025-11-24 02:07:18] 2025-11-24 01:06:40,628 | INFO     | intersect: -4258265797.6992884
[2025-11-24 02:07:18] 2025-11-24 01:06:40,629 | INFO     | chi2: 23.981334559716366
[2025-11-24 02:07:18] 2025-11-24 01:06:40,630 | INFO     | current chi2=23.981334559716366 (change=16.66982518098081 %)
[2025-11-24 02:07:18] 2025-11-24 01:06:40,630 | INFO     | left removable region: 10
[2025-11-24 02:07:18] 2025-11-24 01:06:40,632 | INFO     | sum of square deviations: 1050719920955.5363
[2025-11-24 02:07:18] 2025-11-24 01:06:40,698 | INFO     | sum of deviations: 2648762834128.327
[2025-11-24 02:07:18] 2025-11-24 01:06:40,698 | INFO     | mean x: 1763900122.822237
[2025-11-24 02:07:18] 2025-11-24 01:06:40,698 | INFO     | mean y: 2858649.3495339546
[2025-11-24 02:07:18] 2025-11-24 01:06:40,698 | INFO     | intersect: -4443762182.010573
[2025-11-24 02:07:18] 2025-11-24 01:06:40,700 | INFO     | chi2: 16.75456973011255
[2025-11-24 02:07:18] 2025-11-24 01:06:40,701 | INFO     | current memory leak: 2.52 B/s (using 1502 data points, chi2=16.75)
[2025-11-24 02:07:18] 2025-11-24 01:06:40,703 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 02:07:18] 2025-11-24 01:06:40,703 | INFO     | ..............................
[2025-11-24 02:07:18] 2025-11-24 01:06:40,703 | INFO     | . Timing measurements:
[2025-11-24 02:07:18] 2025-11-24 01:06:40,704 | INFO     | . get job = 0 s
[2025-11-24 02:07:18] 2025-11-24 01:06:40,704 | INFO     | . initial setup = 7 s
[2025-11-24 02:07:18] 2025-11-24 01:06:40,704 | INFO     | . payload setup = 169 s
[2025-11-24 02:07:18] 2025-11-24 01:06:40,704 | INFO     | . stage-in = 0 s
[2025-11-24 02:07:18] 2025-11-24 01:06:40,704 | INFO     | . payload execution = 92716 s
[2025-11-24 02:07:18] 2025-11-24 01:06:40,704 | INFO     | . stage-out = 5 s
[2025-11-24 02:07:18] 2025-11-24 01:06:40,704 | INFO     | . log creation = 2 s
[2025-11-24 02:07:18] 2025-11-24 01:06:40,705 | INFO     | ..............................
[2025-11-24 02:07:18] 2025-11-24 01:06:41,231 | INFO     | time since job start (93208s) is within the limit (172800.0s)
[2025-11-24 02:07:18] 2025-11-24 01:06:41,324 | INFO     | 
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | job summary report
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | --------------------------------------------------
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | PanDA job id: 6891592046
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | task id: 47493068
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | errors: (none)
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | pilot state: finished 
[2025-11-24 02:07:18] 2025-11-24 01:06:41,325 | INFO     | transexitcode: 0
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | exeerrorcode: 0
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | exeerrordiag: 
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | exitcode: 0
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | exitmsg: OK
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | cpuconsumptiontime: 342010 s
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | nevents: 1000
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | neventsw: 0
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | pid: 1985
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | pgrp: 1985
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | corecount: 8
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | event service: False
[2025-11-24 02:07:18] 2025-11-24 01:06:41,326 | INFO     | sizes: {0: 2297968, 1: 2298824, 2: 2298852, 12: 2298852, 23: 2298880, 34: 2298908, 45: 2299064, 56: 2299092, 66: 2299120, 77: 2299148, 88: 2299204, 99: 2299512, 10
[2025-11-24 02:07:18] 2025-11-24 01:06:41,327 | INFO     | --------------------------------------------------
[2025-11-24 02:07:18] 2025-11-24 01:06:41,327 | INFO     | 
[2025-11-24 02:07:18] 2025-11-24 01:06:41,327 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-24 02:07:18] 2025-11-24 01:06:41,704 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,704 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,704 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | job 6891592046 has completed (purged errors)
[2025-11-24 02:07:18] 2025-11-24 01:06:41,706 | INFO     | overall cleanup function is called
[2025-11-24 02:07:18] 2025-11-24 01:06:42,729 | INFO     | --- collectZombieJob: --- 10, [1985]
[2025-11-24 02:07:18] 2025-11-24 01:06:42,730 | INFO     | zombie collector waiting for pid 1985
[2025-11-24 02:07:18] 2025-11-24 01:06:42,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:07:18] 2025-11-24 01:06:42,730 | INFO     | collected zombie processes
[2025-11-24 02:07:18] 2025-11-24 01:06:42,730 | INFO     | will attempt to kill all subprocesses of pid=1985
[2025-11-24 02:07:18] 2025-11-24 01:06:42,872 | INFO     | process IDs to be killed: [1985] (in reverse order)
[2025-11-24 02:07:18] 2025-11-24 01:06:43,983 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:07:18] 2025-11-24 01:06:43,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:07:18] 2025-11-24 01:06:43,987 | INFO     | did not find any defunct processes belonging to 1985
[2025-11-24 02:07:18] 2025-11-24 01:06:44,000 | INFO     | did not find any defunct processes belonging to 1985
[2025-11-24 02:07:18] 2025-11-24 01:06:44,065 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:07:18] 2025-11-24 01:06:44,065 | INFO     | ready for new job
[2025-11-24 02:07:18] 2025-11-24 01:06:44,066 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:07:18] 2025-11-24 01:06:44,073 | INFO     | ***************************************
[2025-11-24 02:07:18] 2025-11-24 01:06:44,073 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:07:18] 2025-11-24 01:06:44,073 | INFO     | ***************************************
[2025-11-24 02:07:18] 2025-11-24 01:06:44,073 | INFO     | 
[2025-11-24 02:07:18] 2025-11-24 01:06:44,074 | INFO     | pilot is running in a VM
[2025-11-24 02:07:18] 2025-11-24 01:06:44,074 | INFO     | architecture information:
[2025-11-24 02:07:18] 2025-11-24 01:06:44,084 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:07:18] 2025-11-24 01:06:44,411 | INFO     | cat /etc/os-release:
[2025-11-24 02:07:18] NAME="CentOS Linux"
[2025-11-24 02:07:18] VERSION="7 (Core)"
[2025-11-24 02:07:18] ID="centos"
[2025-11-24 02:07:18] ID_LIKE="rhel fedora"
[2025-11-24 02:07:18] VERSION_ID="7"
[2025-11-24 02:07:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:07:18] ANSI_COLOR="0;31"
[2025-11-24 02:07:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:07:18] HOME_URL="https://www.centos.org/"
[2025-11-24 02:07:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:07:18] 
[2025-11-24 02:07:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:07:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:07:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:07:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:07:18] 
[2025-11-24 02:07:18] 2025-11-24 01:06:44,412 | INFO     | ***************************************
[2025-11-24 02:07:18] 2025-11-24 01:06:44,916 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-24 02:07:18] 2025-11-24 01:06:45,092 | INFO     | sufficient remaining disk space (495069429760 B)
[2025-11-24 02:07:18] 2025-11-24 01:06:45,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:07:18] 2025-11-24 01:06:45,092 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:07:18] 2025-11-24 01:06:45,093 | INFO     | update_server=False
[2025-11-24 02:07:18] 2025-11-24 01:06:45,093 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:07:18] 2025-11-24 01:06:45,190 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 02:07:18] 2025-11-24 01:06:45,191 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 02:07:18] 2025-11-24 01:06:45,191 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:07:18] 2025-11-24 01:06:45,191 | INFO     | will abort loop
[2025-11-24 02:07:18] 2025-11-24 01:06:45,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:07:18] 2025-11-24 01:06:45,734 | INFO     | all payload control threads have been joined
[2025-11-24 02:07:18] 2025-11-24 01:06:45,847 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:07:18] 2025-11-24 01:06:46,006 | INFO     | all data control threads have been joined
[2025-11-24 02:07:18] 2025-11-24 01:06:46,099 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,118 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,130 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,198 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,375 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,606 | INFO     | all job control threads have been joined
[2025-11-24 02:07:18] 2025-11-24 01:06:46,741 | INFO     | [payload] control thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,845 | INFO     | [job] validate thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,853 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:46,864 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:47,013 | INFO     | [data] control thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:47,043 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:07:18] 2025-11-24 01:06:47,091 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:47,255 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:47,449 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:47,613 | INFO     | [job] control thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:47,663 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:51,054 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:07:18] 2025-11-24 01:06:55,345 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:07:18] 2025-11-24 01:06:57,211 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140002147690304)>', '<ExcThread(monitor, started 140001396369152)>']
[2025-11-24 02:07:18] 2025-11-24 01:07:02,237 | INFO     | all workflow threads have been joined
[2025-11-24 02:07:18] 2025-11-24 01:07:02,238 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:07:18] 2025-11-24 01:07:02,238 | INFO     | traces error code: 0
[2025-11-24 02:07:18] 2025-11-24 01:07:02,239 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:07:18] 2025-11-24 01:07:14,429 | INFO     | PID=27792 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 02:07:18] 2025-11-24 01:07:14,429 | INFO     | .. there are 9 such processes running
[2025-11-24 02:07:18] 2025-11-24 01:07:14,430 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:07:18] 2025-11-24 01:07:14,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:07:18] 2025-11-24 01:07:14,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:07:18] 2025-11-24 01:07:14,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:07:18] 2025-11-24 01:07:14,430 | INFO     | [monitor] control thread has ended
[2025-11-24 02:07:18] 2025-11-24 01:07:14,860 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:07:18] 2025-11-24 01:07:14,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:07:18] 2025-11-24 01:07:15,027 [wrapper] pilotpid: 27792
[2025-11-24 02:07:18] 2025-11-24 01:07:15,123 [wrapper] Pilot exit status: 0
[2025-11-24 02:07:18] 2025-11-24 01:07:15,468 [wrapper] pandaids: 6891592046
[2025-11-24 02:07:18] 2025-11-24 01:07:16,089 [wrapper] cleanup supervisor_pilot  9343 27793
[2025-11-24 02:07:18] 2025-11-24 01:07:16,199 [wrapper] Test setup, not cleaning
[2025-11-24 02:07:18] 2025-11-24 01:07:16,283 [wrapper] apfmon messages muted
[2025-11-24 02:07:18] 2025-11-24 01:07:16,322 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:07:18] 2025-11-24 01:07:16,397 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:07:18]  *** Error codes and diagnostics ***
[2025-11-24 02:07:18]     "exeErrorCode": 0,
[2025-11-24 02:07:18]     "exeErrorDiag": "",
[2025-11-24 02:07:18]     "pilotErrorCode": 0,
[2025-11-24 02:07:18]     "pilotErrorDiag": "",
[2025-11-24 02:07:18]  *** Listing of results directory ***
[2025-11-24 02:07:18] total 1332652
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:18 queuedata.json
[2025-11-24 02:07:18] -rwx------. 1 boinc boinc     36292 Nov 18 19:18 runpilot2-wrapper.sh
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc       100 Nov 23 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:07:18] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 00:08 run_atlas
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc       105 Nov 23 00:08 job.xml
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc      6392 Nov 23 00:08 init_data.xml
[2025-11-24 02:07:18] -rw-r--r--. 2 boinc boinc 409326738 Nov 23 00:08 EVNT.47493065._000636.pool.root.1
[2025-11-24 02:07:18] -rw-r--r--. 2 boinc boinc     15120 Nov 23 00:08 start_atlas.sh
[2025-11-24 02:07:18] drwxrwx--x. 2 boinc boinc        68 Nov 23 00:08 shared
[2025-11-24 02:07:18] -rw-r--r--. 2 boinc boinc    590099 Nov 23 00:08 input.tar.gz
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc         0 Nov 23 00:08 boinc_lockfile
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc      2773 Nov 23 00:08 pandaJob.out
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc    989784 Nov 23 00:13 agis_schedconf.cvmfs.json
[2025-11-24 02:07:18] drwx------. 5 boinc boinc      4096 Nov 23 00:13 pilot3
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc       533 Nov 24 01:37 boinc_task_state.xml
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc 921425831 Nov 24 02:03 HITS.47493068._005853.pool.root.1
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc      1031 Nov 24 02:04 memory_monitor_summary.json
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc   1526164 Nov 24 02:04 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc   2580152 Nov 24 02:04 log.47493068._005853.job.log.tgz.1
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc      7944 Nov 24 02:06 heartbeat.json
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc        95 Nov 24 02:06 pilot_heartbeat.json
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc      8192 Nov 24 02:06 boinc_mmap_file
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc        29 Nov 24 02:06 wrapper_checkpoint.txt
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc       820 Nov 24 02:07 pilotlog.txt
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc  12409571 Nov 24 02:07 log.47493068._005853.job.log.1
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc       353 Nov 24 02:07 output.list
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc       620 Nov 24 02:07 runtime_log
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc  15011840 Nov 24 02:07 result.tar.gz
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc      8703 Nov 24 02:07 runtime_log.err
[2025-11-24 02:07:18] -rw-------. 1 boinc boinc       662 Nov 24 02:07 EcFMDm9Sff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4fFKDm3oRcMm.diag
[2025-11-24 02:07:18] -rw-r--r--. 1 boinc boinc     21489 Nov 24 02:07 stderr.txt
[2025-11-24 02:07:19] HITS file was successfully produced:
[2025-11-24 02:07:19] -rw-------. 1 boinc boinc 921425831 Nov 24 02:03 shared/HITS.pool.root.1
[2025-11-24 02:07:19]  *** Contents of shared directory: ***
[2025-11-24 02:07:19] total 1314824
[2025-11-24 02:07:19] -rw-r--r--. 2 boinc boinc 409326738 Nov 23 00:08 ATLAS.root_0
[2025-11-24 02:07:19] -rw-r--r--. 2 boinc boinc     15120 Nov 23 00:08 start_atlas.sh
[2025-11-24 02:07:19] -rw-r--r--. 2 boinc boinc    590099 Nov 23 00:08 input.tar.gz
[2025-11-24 02:07:19] -rw-------. 1 boinc boinc 921425831 Nov 24 02:03 HITS.pool.root.1
[2025-11-24 02:07:19] -rw-------. 1 boinc boinc  15011840 Nov 24 02:07 result.tar.gz
02:07:20 (24017): run_atlas exited; CPU time 342572.195941
02:07:20 (24017): called boinc_finish(0)

</stderr_txt>
]]>

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