Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:41:33 (27797): wrapper (7.7.26015): starting
03:41:33 (27797): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 03:41:33] Arguments: --nthreads 8
[2025-11-23 03:41:33] Threads: 8
[2025-11-23 03:41:33] Checking for CVMFS
[2025-11-23 03:41:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 03:41:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 03:41:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 03:41:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 03:41:36] 2.11.2.0 32446 167269 139732 153193 1 118 21169882 25165825 4462 130560 2 57526954 99.903 25172142 2416 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 03:41:36] CVMFS is ok
[2025-11-23 03:41:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 03:41:36] Checking for apptainer binary...
[2025-11-23 03:41:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 03:41:36] Running /usr/bin/apptainer --version
[2025-11-23 03:41:36] apptainer version 1.3.2-1.el7
[2025-11-23 03:41:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 03:42:02] cg-vwn269.simple-grid.lan
[2025-11-23 03:42:02] apptainer works
[2025-11-23 03:42:02] Set ATHENA_PROC_NUMBER=8
[2025-11-23 03:42:02] Set ATHENA_CORE_NUMBER=8
[2025-11-23 03:42:02] Starting ATLAS job with PandaID=6890967244
[2025-11-23 03:42:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 06:08:58]  *** The last 200 lines of the pilot log: ***
[2025-11-24 06:08:58] 2025-11-24 05:08:08,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:08:58] 2025-11-24 05:08:10,135 | INFO     | time since job start (94936s) is within the limit (172800.0s)
[2025-11-24 06:08:58] 2025-11-24 05:08:10,871 | INFO     | monitor loop #6390: job 0:6890967244 is in state 'finished'
[2025-11-24 06:08:58] 2025-11-24 05:08:10,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:08:58] 2025-11-24 05:08:12,144 | INFO     | time since job start (94938s) is within the limit (172800.0s)
[2025-11-24 06:08:58] 2025-11-24 05:08:13,381 | INFO     | monitor loop #6391: job 0:6890967244 is in state 'finished'
[2025-11-24 06:08:58] 2025-11-24 05:08:13,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:08:58] 2025-11-24 05:08:14,150 | INFO     | time since job start (94940s) is within the limit (172800.0s)
[2025-11-24 06:08:58] 2025-11-24 05:08:15,895 | INFO     | monitor loop #6392: job 0:6890967244 is in state 'finished'
[2025-11-24 06:08:58] 2025-11-24 05:08:15,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:08:58] 2025-11-24 05:08:16,160 | INFO     | time since job start (94942s) is within the limit (172800.0s)
[2025-11-24 06:08:58] 2025-11-24 05:08:18,167 | INFO     | time since job start (94944s) is within the limit (172800.0s)
[2025-11-24 06:08:58] 2025-11-24 05:08:18,411 | INFO     | monitor loop #6393: job 0:6890967244 is in state 'finished'
[2025-11-24 06:08:58] 2025-11-24 05:08:18,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,061 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 06:08:58] 2025-11-24 05:08:20,062 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 06:08:58] 2025-11-24 05:08:20,064 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6890967244/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,065 | INFO     | extracted standard info from prmon json
[2025-11-24 06:08:58] 2025-11-24 05:08:20,065 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 06:08:58] 2025-11-24 05:08:20,065 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 06:08:58] 2025-11-24 05:08:20,095 | INFO     | fitting pss+swap vs Time
[2025-11-24 06:08:58] 2025-11-24 05:08:20,097 | INFO     | sum of square deviations: 1148018014634.8447
[2025-11-24 06:08:58] 2025-11-24 05:08:20,160 | INFO     | sum of deviations: 3334991615422.9927
[2025-11-24 06:08:58] 2025-11-24 05:08:20,161 | INFO     | mean x: 1763913639.3865547
[2025-11-24 06:08:58] 2025-11-24 05:08:20,161 | INFO     | mean y: 2844484.663865546
[2025-11-24 06:08:58] 2025-11-24 05:08:20,161 | INFO     | intersect: -5121323535.953419
[2025-11-24 06:08:58] 2025-11-24 05:08:20,163 | INFO     | chi2: 23.75064412931856
[2025-11-24 06:08:58] 2025-11-24 05:08:20,165 | INFO     | sum of square deviations: 1136923195697.6965
[2025-11-24 06:08:58] 2025-11-24 05:08:20,176 | INFO     | time since job start (94946s) is within the limit (172800.0s)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,322 | INFO     | sum of deviations: 3867303910353.1846
[2025-11-24 06:08:58] 2025-11-24 05:08:20,322 | INFO     | mean x: 1763913486.8910506
[2025-11-24 06:08:58] 2025-11-24 05:08:20,322 | INFO     | mean y: 2851799.4474708172
[2025-11-24 06:08:58] 2025-11-24 05:08:20,324 | INFO     | intersect: -5997192487.794176
[2025-11-24 06:08:58] 2025-11-24 05:08:20,326 | INFO     | chi2: 20.23801608734193
[2025-11-24 06:08:58] 2025-11-24 05:08:20,327 | INFO     | current chi2=20.23801608734193 (change=14.789611695796193 %)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,327 | INFO     | right removable region: 1541
[2025-11-24 06:08:58] 2025-11-24 05:08:20,329 | INFO     | sum of square deviations: 1136921887247.697
[2025-11-24 06:08:58] 2025-11-24 05:08:20,429 | INFO     | sum of deviations: 2719679590219.244
[2025-11-24 06:08:58] 2025-11-24 05:08:20,430 | INFO     | mean x: 1763913791.8910506
[2025-11-24 06:08:58] 2025-11-24 05:08:20,430 | INFO     | mean y: 2852940.227626459
[2025-11-24 06:08:58] 2025-11-24 05:08:20,430 | INFO     | intersect: -4216680866.378701
[2025-11-24 06:08:58] 2025-11-24 05:08:20,432 | INFO     | chi2: 19.59247862614466
[2025-11-24 06:08:58] 2025-11-24 05:08:20,432 | INFO     | current chi2=19.59247862614466 (change=17.507590449056178 %)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,432 | INFO     | left removable region: 10
[2025-11-24 06:08:58] 2025-11-24 05:08:20,434 | INFO     | sum of square deviations: 1112764112095.7593
[2025-11-24 06:08:58] 2025-11-24 05:08:20,518 | INFO     | sum of deviations: 2836217042106.916
[2025-11-24 06:08:58] 2025-11-24 05:08:20,518 | INFO     | mean x: 1763913761.401045
[2025-11-24 06:08:58] 2025-11-24 05:08:20,519 | INFO     | mean y: 2868841.0522534293
[2025-11-24 06:08:58] 2025-11-24 05:08:20,523 | INFO     | intersect: -4493000693.66009
[2025-11-24 06:08:58] 2025-11-24 05:08:20,525 | INFO     | chi2: 12.643963031246768
[2025-11-24 06:08:58] 2025-11-24 05:08:20,526 | INFO     | current memory leak: 2.55 B/s (using 1531 data points, chi2=12.64)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | ..............................
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | . Timing measurements:
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | . get job = 0 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | . initial setup = 8 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | . payload setup = 173 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | . stage-in = 0 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,533 | INFO     | . payload execution = 94467 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,534 | INFO     | . stage-out = 4 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,534 | INFO     | . log creation = 1 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,534 | INFO     | ..............................
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | 
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | job summary report
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | --------------------------------------------------
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | PanDA job id: 6890967244
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | task id: 47483661
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | errors: (none)
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 06:08:58] 2025-11-24 05:08:20,701 | INFO     | pilot state: finished 
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | transexitcode: 0
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | exeerrorcode: 0
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | exeerrordiag: 
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | exitcode: 0
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | exitmsg: OK
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | cpuconsumptiontime: 342358 s
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | nevents: 1000
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | neventsw: 0
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | pid: 5853
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | pgrp: 5853
[2025-11-24 06:08:58] 2025-11-24 05:08:20,702 | INFO     | corecount: 8
[2025-11-24 06:08:58] 2025-11-24 05:08:20,703 | INFO     | event service: False
[2025-11-24 06:08:58] 2025-11-24 05:08:20,703 | INFO     | sizes: {0: 2298566, 1: 2298821, 2: 2298821, 12: 2298849, 23: 2298877, 34: 2298905, 44: 2299061, 55: 2299089, 66: 2299117, 77: 2299145, 87: 2299201, 96: 2299771, 98
[2025-11-24 06:08:58] 2025-11-24 05:08:20,703 | INFO     | --------------------------------------------------
[2025-11-24 06:08:58] 2025-11-24 05:08:20,703 | INFO     | 
[2025-11-24 06:08:58] 2025-11-24 05:08:20,703 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-24 06:08:58] 2025-11-24 05:08:21,008 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,008 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,010 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,010 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,010 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,011 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 06:08:58] 2025-11-24 05:08:21,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,011 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 06:08:58] 2025-11-24 05:08:21,011 | INFO     | job 6890967244 has completed (purged errors)
[2025-11-24 06:08:58] 2025-11-24 05:08:21,012 | INFO     | overall cleanup function is called
[2025-11-24 06:08:58] 2025-11-24 05:08:22,032 | INFO     | --- collectZombieJob: --- 10, [5853]
[2025-11-24 06:08:58] 2025-11-24 05:08:22,032 | INFO     | zombie collector waiting for pid 5853
[2025-11-24 06:08:58] 2025-11-24 05:08:22,032 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 06:08:58] 2025-11-24 05:08:22,032 | INFO     | collected zombie processes
[2025-11-24 06:08:58] 2025-11-24 05:08:22,032 | INFO     | will attempt to kill all subprocesses of pid=5853
[2025-11-24 06:08:58] 2025-11-24 05:08:22,188 | INFO     | process IDs to be killed: [5853] (in reverse order)
[2025-11-24 06:08:58] 2025-11-24 05:08:22,910 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 06:08:58] 2025-11-24 05:08:22,911 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 06:08:58] 2025-11-24 05:08:22,914 | INFO     | did not find any defunct processes belonging to 5853
[2025-11-24 06:08:58] 2025-11-24 05:08:22,917 | INFO     | did not find any defunct processes belonging to 5853
[2025-11-24 06:08:58] 2025-11-24 05:08:22,975 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 06:08:58] 2025-11-24 05:08:22,975 | INFO     | ready for new job
[2025-11-24 06:08:58] 2025-11-24 05:08:22,975 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 06:08:58] 2025-11-24 05:08:22,982 | INFO     | ***************************************
[2025-11-24 06:08:58] 2025-11-24 05:08:22,982 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 06:08:58] 2025-11-24 05:08:22,982 | INFO     | ***************************************
[2025-11-24 06:08:58] 2025-11-24 05:08:22,982 | INFO     | 
[2025-11-24 06:08:58] 2025-11-24 05:08:22,983 | INFO     | pilot is running in a VM
[2025-11-24 06:08:58] 2025-11-24 05:08:22,983 | INFO     | architecture information:
[2025-11-24 06:08:58] 2025-11-24 05:08:22,997 | INFO     | executing command: cat /etc/os-release
[2025-11-24 06:08:58] 2025-11-24 05:08:23,286 | INFO     | cat /etc/os-release:
[2025-11-24 06:08:58] NAME="CentOS Linux"
[2025-11-24 06:08:58] VERSION="7 (Core)"
[2025-11-24 06:08:58] ID="centos"
[2025-11-24 06:08:58] ID_LIKE="rhel fedora"
[2025-11-24 06:08:58] VERSION_ID="7"
[2025-11-24 06:08:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 06:08:58] ANSI_COLOR="0;31"
[2025-11-24 06:08:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 06:08:58] HOME_URL="https://www.centos.org/"
[2025-11-24 06:08:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 06:08:58] 
[2025-11-24 06:08:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 06:08:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 06:08:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 06:08:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 06:08:58] 
[2025-11-24 06:08:58] 2025-11-24 05:08:23,286 | INFO     | ***************************************
[2025-11-24 06:08:58] 2025-11-24 05:08:23,790 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-24 06:08:58] 2025-11-24 05:08:24,060 | INFO     | sufficient remaining disk space (494937309184 B)
[2025-11-24 06:08:58] 2025-11-24 05:08:24,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 06:08:58] 2025-11-24 05:08:24,060 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 06:08:58] 2025-11-24 05:08:24,060 | INFO     | update_server=False
[2025-11-24 06:08:58] 2025-11-24 05:08:24,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 06:08:58] 2025-11-24 05:08:24,061 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 06:08:58] 2025-11-24 05:08:24,373 | INFO     | all job control threads have been joined
[2025-11-24 06:08:58] 2025-11-24 05:08:24,428 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:08:58] 2025-11-24 05:08:24,428 | INFO     | aborting loop
[2025-11-24 06:08:58] 2025-11-24 05:08:24,625 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 06:08:58] 2025-11-24 05:08:24,850 | INFO     | all payload control threads have been joined
[2025-11-24 06:08:58] 2025-11-24 05:08:24,925 | INFO     | all data control threads have been joined
[2025-11-24 06:08:58] 2025-11-24 05:08:25,067 | INFO     | [job] retrieve thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,380 | INFO     | [job] control thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,434 | INFO     | [job] job monitor thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,436 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,546 | INFO     | [payload] validate_post thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,721 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 06:08:58] 2025-11-24 05:08:25,857 | INFO     | [payload] control thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,892 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,932 | INFO     | [data] control thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:25,968 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:26,166 | INFO     | [payload] failed_post thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:26,200 | INFO     | [job] validate thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:26,403 | INFO     | [data] copytool_in thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:26,535 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:26,633 | INFO     | [data] copytool_out thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:26,727 | INFO     | [job] queue monitor thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:28,071 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 06:08:58] 2025-11-24 05:08:39,169 | INFO     | [monitor] cgroup control has ended
[2025-11-24 06:08:58] 2025-11-24 05:08:40,348 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438347712320)>', '<ExcThread(monitor, started 140437738202880)>']
[2025-11-24 06:08:58] 2025-11-24 05:08:45,373 | INFO     | all workflow threads have been joined
[2025-11-24 06:08:58] 2025-11-24 05:08:45,374 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 06:08:58] 2025-11-24 05:08:45,374 | INFO     | traces error code: 0
[2025-11-24 06:08:58] 2025-11-24 05:08:45,374 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 06:08:58] 2025-11-24 05:08:53,366 | INFO     | PID=31642 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 06:08:58] 2025-11-24 05:08:53,367 | INFO     | .. there are 9 such processes running
[2025-11-24 06:08:58] 2025-11-24 05:08:53,367 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 06:08:58] 2025-11-24 05:08:53,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 06:08:58] 2025-11-24 05:08:53,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 06:08:58] 2025-11-24 05:08:53,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 06:08:58] 2025-11-24 05:08:53,367 | CRITICAL | thread 'MainThread' is not alive
[2025-11-24 06:08:58] 2025-11-24 05:08:53,367 | INFO     | [monitor] control thread has ended
[2025-11-24 06:08:58] 2025-11-24 05:08:53,866 [wrapper] ==== pilot stdout END ====
[2025-11-24 06:08:58] 2025-11-24 05:08:53,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 06:08:58] 2025-11-24 05:08:54,000 [wrapper] pilotpid: 31642
[2025-11-24 06:08:58] 2025-11-24 05:08:54,093 [wrapper] Pilot exit status: 0
[2025-11-24 06:08:58] 2025-11-24 05:08:54,496 [wrapper] pandaids: 6890967244
[2025-11-24 06:08:58] 2025-11-24 05:08:55,480 [wrapper] cleanup supervisor_pilot 24949 31643
[2025-11-24 06:08:58] 2025-11-24 05:08:55,533 [wrapper] Test setup, not cleaning
[2025-11-24 06:08:58] 2025-11-24 05:08:55,630 [wrapper] apfmon messages muted
[2025-11-24 06:08:58] 2025-11-24 05:08:55,739 [wrapper] ==== wrapper stdout END ====
[2025-11-24 06:08:58] 2025-11-24 05:08:55,834 [wrapper] ==== wrapper stderr END ====
[2025-11-24 06:08:58]  *** Error codes and diagnostics ***
[2025-11-24 06:08:58]     "exeErrorCode": 0,
[2025-11-24 06:08:58]     "exeErrorDiag": "",
[2025-11-24 06:08:58]     "pilotErrorCode": 0,
[2025-11-24 06:08:58]     "pilotErrorDiag": "",
[2025-11-24 06:08:58]  *** Listing of results directory ***
[2025-11-24 06:08:58] total 1341632
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc    576529 Nov 18 04:56 pilot3.tar.gz
[2025-11-24 06:08:58] -rwx------. 1 boinc boinc     36292 Nov 18 05:00 runpilot2-wrapper.sh
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc      5112 Nov 18 05:00 queuedata.json
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc       100 Nov 23 03:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 06:08:58] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 03:41 run_atlas
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc       105 Nov 23 03:41 job.xml
[2025-11-24 06:08:58] -rw-r--r--. 2 boinc boinc 409906706 Nov 23 03:41 EVNT.47483658._000036.pool.root.1
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc      6392 Nov 23 03:41 init_data.xml
[2025-11-24 06:08:58] -rw-r--r--. 2 boinc boinc     15120 Nov 23 03:41 start_atlas.sh
[2025-11-24 06:08:58] drwxrwx--x. 2 boinc boinc        68 Nov 23 03:41 shared
[2025-11-24 06:08:58] -rw-r--r--. 2 boinc boinc    590098 Nov 23 03:41 input.tar.gz
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc         0 Nov 23 03:41 boinc_lockfile
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc      2771 Nov 23 03:42 pandaJob.out
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc    989784 Nov 23 03:45 agis_schedconf.cvmfs.json
[2025-11-24 06:08:58] drwx------. 5 boinc boinc      4096 Nov 23 03:45 pilot3
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc       533 Nov 24 05:41 boinc_task_state.xml
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc 929456599 Nov 24 06:04 HITS.47483661._000846.pool.root.1
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc      1030 Nov 24 06:06 memory_monitor_summary.json
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc   1526164 Nov 24 06:06 agis_ddmendpoints.agis.ALL.json
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc   2610920 Nov 24 06:06 log.47483661._000846.job.log.tgz.1
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc        95 Nov 24 06:08 pilot_heartbeat.json
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc      8639 Nov 24 06:08 heartbeat.json
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc      8192 Nov 24 06:08 boinc_mmap_file
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc        29 Nov 24 06:08 wrapper_checkpoint.txt
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc       890 Nov 24 06:08 pilotlog.txt
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc  12672987 Nov 24 06:08 log.47483661._000846.job.log.1
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc       353 Nov 24 06:08 output.list
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc       620 Nov 24 06:08 runtime_log
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc  15298560 Nov 24 06:08 result.tar.gz
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc      8717 Nov 24 06:08 runtime_log.err
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc       662 Nov 24 06:08 RRxLDm23Rf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm89JODmHpUGKo.diag
[2025-11-24 06:08:58] -rw-r--r--. 1 boinc boinc     21410 Nov 24 06:08 stderr.txt
[2025-11-24 06:08:58] HITS file was successfully produced:
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc 929456599 Nov 24 06:04 shared/HITS.pool.root.1
[2025-11-24 06:08:58]  *** Contents of shared directory: ***
[2025-11-24 06:08:58] total 1323512
[2025-11-24 06:08:58] -rw-r--r--. 2 boinc boinc 409906706 Nov 23 03:41 ATLAS.root_0
[2025-11-24 06:08:58] -rw-r--r--. 2 boinc boinc     15120 Nov 23 03:41 start_atlas.sh
[2025-11-24 06:08:58] -rw-r--r--. 2 boinc boinc    590098 Nov 23 03:41 input.tar.gz
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc 929456599 Nov 24 06:04 HITS.pool.root.1
[2025-11-24 06:08:58] -rw-------. 1 boinc boinc  15298560 Nov 24 06:08 result.tar.gz
06:09:00 (27797): run_atlas exited; CPU time 342873.206887
06:09:00 (27797): called boinc_finish(0)

</stderr_txt>
]]>

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