Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:07 (758479): wrapper (7.7.26015): starting
00:01:07 (758479): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 00:01:07] Arguments: --nthreads 12
[2025-11-20 00:01:07] Threads: 12
[2025-11-20 00:01:07] Checking for CVMFS
[2025-11-20 00:01:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:01:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:01:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:01:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:01:09] 2.13.3.0 11771 20917 228140 153069 1 563 18785224 32935937 33802 16776704 0 142106873 99.601 152806710 39499 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 00:01:09] CVMFS is ok
[2025-11-20 00:01:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:01:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:01:09] Further information can be found at the LHC@home message board.
[2025-11-20 00:01:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:01:09] Checking for apptainer binary...
[2025-11-20 00:01:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:01:09] Running /usr/bin/apptainer --version
[2025-11-20 00:01:09] apptainer version 1.4.4-1.el9
[2025-11-20 00:01:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:01:09] c7-2-14.aglt2.org
[2025-11-20 00:01:09] apptainer works
[2025-11-20 00:01:09] Set ATHENA_PROC_NUMBER=12
[2025-11-20 00:01:09] Set ATHENA_CORE_NUMBER=12
[2025-11-20 00:01:09] Starting ATLAS job with PandaID=6891569544
[2025-11-20 00:01:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:26:03]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:26:03] 2025-11-20 22:25:00,296 | INFO     | fitting pss+swap vs Time
[2025-11-20 17:26:03] 2025-11-20 22:25:00,297 | INFO     | sum of square deviations: 332958591390.7132
[2025-11-20 17:26:03] 2025-11-20 22:25:00,315 | INFO     | sum of deviations: 3192364192114.7305
[2025-11-20 17:26:03] 2025-11-20 22:25:00,315 | INFO     | mean x: 1763646238.0566406
[2025-11-20 17:26:03] 2025-11-20 22:25:00,316 | INFO     | mean y: 3470003.0234375
[2025-11-20 17:26:03] 2025-11-20 22:25:00,316 | INFO     | intersect: -16906143515.0223
[2025-11-20 17:26:03] 2025-11-20 22:25:00,316 | INFO     | chi2: 12.696281267458572
[2025-11-20 17:26:03] 2025-11-20 22:25:00,317 | INFO     | sum of square deviations: 328105665618.5394
[2025-11-20 17:26:03] 2025-11-20 22:25:00,340 | INFO     | sum of deviations: 3653678217481.2524
[2025-11-20 17:26:03] 2025-11-20 22:25:00,340 | INFO     | mean x: 1763646085.5642786
[2025-11-20 17:26:03] 2025-11-20 22:25:00,340 | INFO     | mean y: 3484499.1334641804
[2025-11-20 17:26:03] 2025-11-20 22:25:00,341 | INFO     | intersect: -19635905982.053577
[2025-11-20 17:26:03] 2025-11-20 22:25:00,342 | INFO     | chi2: 8.93979153441781
[2025-11-20 17:26:03] 2025-11-20 22:25:00,342 | INFO     | current chi2=8.93979153441781 (change=29.58732288539401 %)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,343 | INFO     | sum of square deviations: 323300012136.02844
[2025-11-20 17:26:03] 2025-11-20 22:25:00,365 | INFO     | sum of deviations: 3775390937306.641
[2025-11-20 17:26:03] 2025-11-20 22:25:00,365 | INFO     | mean x: 1763645933.0700197
[2025-11-20 17:26:03] 2025-11-20 22:25:00,366 | INFO     | mean y: 3488354.300788955
[2025-11-20 17:26:03] 2025-11-20 22:25:00,366 | INFO     | intersect: -20591787310.3618
[2025-11-20 17:26:03] 2025-11-20 22:25:00,367 | INFO     | chi2: 8.432477536702878
[2025-11-20 17:26:03] 2025-11-20 22:25:00,367 | INFO     | current chi2=8.432477536702878 (change=5.67478554462701 %)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,367 | INFO     | right removable region: 1013
[2025-11-20 17:26:03] 2025-11-20 22:25:00,368 | INFO     | sum of square deviations: 328104693278.5393
[2025-11-20 17:26:03] 2025-11-20 22:25:00,390 | INFO     | sum of deviations: 2681185212078.537
[2025-11-20 17:26:03] 2025-11-20 22:25:00,390 | INFO     | mean x: 1763646390.5642786
[2025-11-20 17:26:03] 2025-11-20 22:25:00,390 | INFO     | mean y: 3486061.8773307162
[2025-11-20 17:26:03] 2025-11-20 22:25:00,390 | INFO     | intersect: -14408568134.806494
[2025-11-20 17:26:03] 2025-11-20 22:25:00,391 | INFO     | chi2: 8.183267069025101
[2025-11-20 17:26:03] 2025-11-20 22:25:00,391 | INFO     | current chi2=8.183267069025101 (change=35.54595320757923 %)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,392 | INFO     | sum of square deviations: 323298191403.74445
[2025-11-20 17:26:03] 2025-11-20 22:25:00,412 | INFO     | sum of deviations: 2281782248412.838
[2025-11-20 17:26:03] 2025-11-20 22:25:00,418 | INFO     | mean x: 1763646543.0719922
[2025-11-20 17:26:03] 2025-11-20 22:25:00,418 | INFO     | mean y: 3498731.2899408285
[2025-11-20 17:26:03] 2025-11-20 22:25:00,418 | INFO     | intersect: -12444010971.697313
[2025-11-20 17:26:03] 2025-11-20 22:25:00,419 | INFO     | chi2: 5.560810454063672
[2025-11-20 17:26:03] 2025-11-20 22:25:00,419 | INFO     | current chi2=5.560810454063672 (change=32.04657250999204 %)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,420 | INFO     | sum of square deviations: 318539100384.4502
[2025-11-20 17:26:03] 2025-11-20 22:25:00,447 | INFO     | sum of deviations: 2103829008500.7375
[2025-11-20 17:26:03] 2025-11-20 22:25:00,447 | INFO     | mean x: 1763646695.5758176
[2025-11-20 17:26:03] 2025-11-20 22:25:00,447 | INFO     | mean y: 3504429.2844400397
[2025-11-20 17:26:03] 2025-11-20 22:25:00,447 | INFO     | intersect: -11644707907.66483
[2025-11-20 17:26:03] 2025-11-20 22:25:00,448 | INFO     | chi2: 5.081915724797935
[2025-11-20 17:26:03] 2025-11-20 22:25:00,448 | INFO     | current chi2=5.081915724797935 (change=8.611959231873751 %)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,448 | INFO     | left removable region: 30
[2025-11-20 17:26:03] 2025-11-20 22:25:00,449 | INFO     | sum of square deviations: 294544695702.0797
[2025-11-20 17:26:03] 2025-11-20 22:25:00,468 | INFO     | sum of deviations: 2299967982276.4565
[2025-11-20 17:26:03] 2025-11-20 22:25:00,468 | INFO     | mean x: 1763646817.5991862
[2025-11-20 17:26:03] 2025-11-20 22:25:00,468 | INFO     | mean y: 3535889.8209562562
[2025-11-20 17:26:03] 2025-11-20 22:25:00,468 | INFO     | intersect: -13767994447.376873
[2025-11-20 17:26:03] 2025-11-20 22:25:00,469 | INFO     | chi2: 0.2346620982914319
[2025-11-20 17:26:03] 2025-11-20 22:25:00,469 | INFO     | current memory leak: 7.81 B/s (using 983 data points, chi2=0.23)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | could have reported an average CPU frequency of 3174 MHz (38 samples)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | ..............................
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . Timing measurements:
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . get job = 0 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . initial setup = 7 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . payload setup = 37 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . stage-in = 0 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . payload execution = 62456 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . stage-out = 5 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | . log creation = 1 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,471 | INFO     | ..............................
[2025-11-20 17:26:03] 2025-11-20 22:25:00,544 | INFO     | 
[2025-11-20 17:26:03] 2025-11-20 22:25:00,544 | INFO     | job summary report
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | --------------------------------------------------
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | PanDA job id: 6891569544
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | task id: 47493068
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | errors: (none)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | pilot state: finished 
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | transexitcode: 0
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | exeerrorcode: 0
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | exeerrordiag: 
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | exitcode: 0
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | exitmsg: OK
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | cpuconsumptiontime: 202161 s
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | nevents: 1000
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | neventsw: 0
[2025-11-20 17:26:03] 2025-11-20 22:25:00,545 | INFO     | pid: 774766
[2025-11-20 17:26:03] 2025-11-20 22:25:00,546 | INFO     | pgrp: 774766
[2025-11-20 17:26:03] 2025-11-20 22:25:00,546 | INFO     | corecount: 12
[2025-11-20 17:26:03] 2025-11-20 22:25:00,546 | INFO     | event service: False
[2025-11-20 17:26:03] 2025-11-20 22:25:00,546 | INFO     | sizes: {0: 2297029, 1: 2297228, 12: 2297228, 22: 2297256, 26: 2297546, 33: 2297574, 62493: 2352096, 62494: 2352095, 62501: 2362741, 62502: 2362797, 62519: 2363043}
[2025-11-20 17:26:03] 2025-11-20 22:25:00,546 | INFO     | --------------------------------------------------
[2025-11-20 17:26:03] 2025-11-20 22:25:00,546 | INFO     | 
[2025-11-20 17:26:03] 2025-11-20 22:25:00,546 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 17:26:03] 2025-11-20 22:25:00,567 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,567 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,571 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,571 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,571 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 17:26:03] 2025-11-20 22:25:00,571 | INFO     | job 6891569544 has completed (purged errors)
[2025-11-20 17:26:03] 2025-11-20 22:25:00,572 | INFO     | overall cleanup function is called
[2025-11-20 17:26:03] 2025-11-20 22:25:01,593 | INFO     | --- collectZombieJob: --- 10, [774766]
[2025-11-20 17:26:03] 2025-11-20 22:25:01,593 | INFO     | zombie collector waiting for pid 774766
[2025-11-20 17:26:03] 2025-11-20 22:25:01,593 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 17:26:03] 2025-11-20 22:25:01,593 | INFO     | collected zombie processes
[2025-11-20 17:26:03] 2025-11-20 22:25:01,593 | INFO     | will attempt to kill all subprocesses of pid=774766
[2025-11-20 17:26:03] 2025-11-20 22:25:02,425 | INFO     | PID=763076 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 17:26:03] 2025-11-20 22:25:02,425 | INFO     | .. there are 46 such processes running
[2025-11-20 17:26:03] 2025-11-20 22:25:03,099 | INFO     | process IDs to be killed: [774766] (in reverse order)
[2025-11-20 17:26:03] 2025-11-20 22:25:03,320 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 17:26:03] 2025-11-20 22:25:03,320 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 17:26:03] 2025-11-20 22:25:03,355 | INFO     | did not find any defunct processes belonging to 774766
[2025-11-20 17:26:03] 2025-11-20 22:25:03,400 | INFO     | did not find any defunct processes belonging to 774766
[2025-11-20 17:26:03] 2025-11-20 22:25:03,401 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 17:26:03] 2025-11-20 22:25:03,402 | INFO     | ready for new job
[2025-11-20 17:26:03] 2025-11-20 22:25:03,402 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 17:26:03] 2025-11-20 22:25:03,414 | INFO     | ***************************************
[2025-11-20 17:26:03] 2025-11-20 22:25:03,414 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 17:26:03] 2025-11-20 22:25:03,415 | INFO     | ***************************************
[2025-11-20 17:26:03] 2025-11-20 22:25:03,415 | INFO     | 
[2025-11-20 17:26:03] 2025-11-20 22:25:03,421 | INFO     | architecture information:
[2025-11-20 17:26:03] 2025-11-20 22:25:03,422 | INFO     | executing command: cat /etc/os-release
[2025-11-20 17:26:03] 2025-11-20 22:25:03,439 | INFO     | cat /etc/os-release:
[2025-11-20 17:26:03] NAME="CentOS Linux"
[2025-11-20 17:26:03] VERSION="7 (Core)"
[2025-11-20 17:26:03] ID="centos"
[2025-11-20 17:26:03] ID_LIKE="rhel fedora"
[2025-11-20 17:26:03] VERSION_ID="7"
[2025-11-20 17:26:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 17:26:03] ANSI_COLOR="0;31"
[2025-11-20 17:26:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 17:26:03] HOME_URL="https://www.centos.org/"
[2025-11-20 17:26:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 17:26:03] 
[2025-11-20 17:26:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:26:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:26:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:26:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:26:03] 
[2025-11-20 17:26:03] 2025-11-20 22:25:03,440 | INFO     | ***************************************
[2025-11-20 17:26:03] 2025-11-20 22:25:03,942 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 17:26:03] 2025-11-20 22:25:04,015 | INFO     | sufficient remaining disk space (68041048064 B)
[2025-11-20 17:26:03] 2025-11-20 22:25:04,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:26:03] 2025-11-20 22:25:04,016 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:26:03] 2025-11-20 22:25:04,016 | INFO     | update_server=False
[2025-11-20 17:26:03] 2025-11-20 22:25:04,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:26:03] 2025-11-20 22:25:04,020 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:26:03] 2025-11-20 22:25:04,020 | INFO     | aborting loop
[2025-11-20 17:26:03] 2025-11-20 22:25:04,132 | INFO     | all job control threads have been joined
[2025-11-20 17:26:03] 2025-11-20 22:25:04,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:26:03] 2025-11-20 22:25:05,022 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,026 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,029 | INFO     | [job] validate thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,082 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,104 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,137 | INFO     | [job] control thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,138 | INFO     | all data control threads have been joined
[2025-11-20 17:26:03] 2025-11-20 22:25:05,169 | INFO     | all payload control threads have been joined
[2025-11-20 17:26:03] 2025-11-20 22:25:05,275 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,379 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,501 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,536 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:05,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:26:03] 2025-11-20 22:25:06,143 | INFO     | [data] control thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:06,175 | INFO     | [payload] control thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:06,589 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:06,961 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:07,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:26:03] 2025-11-20 22:25:11,367 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:26:03] 2025-11-20 22:25:35,370 | INFO     | PID=763076 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 17:26:03] 2025-11-20 22:25:35,370 | INFO     | .. there are 46 such processes running
[2025-11-20 17:26:03] 2025-11-20 22:25:35,371 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:26:03] 2025-11-20 22:25:35,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:26:03] 2025-11-20 22:25:35,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:26:03] 2025-11-20 22:25:55,758 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:26:03] 2025-11-20 22:25:57,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140479706109760)>', '<ExcThread(monitor, started 140479219873536)>']
[2025-11-20 17:26:03] 2025-11-20 22:25:57,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:26:03] 2025-11-20 22:25:57,509 | INFO     | [monitor] control thread has ended
[2025-11-20 17:26:03] 2025-11-20 22:26:02,292 | INFO     | all workflow threads have been joined
[2025-11-20 17:26:03] 2025-11-20 22:26:02,292 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:26:03] 2025-11-20 22:26:02,296 | INFO     | traces error code: 0
[2025-11-20 17:26:03] 2025-11-20 22:26:02,296 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:26:03] 2025-11-20 22:26:02,787 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:26:03] 2025-11-20 22:26:02,812 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:26:03] 2025-11-20 22:26:02,819 [wrapper] pilotpid: 763076
[2025-11-20 17:26:03] 2025-11-20 22:26:02,825 [wrapper] Pilot exit status: 0
[2025-11-20 17:26:03] 2025-11-20 22:26:02,861 [wrapper] pandaids: 6891569544
[2025-11-20 17:26:03] 2025-11-20 22:26:02,997 [wrapper] cleanup supervisor_pilot 1167655 763077
[2025-11-20 17:26:03] 2025-11-20 22:26:03,001 [wrapper] Test setup, not cleaning
[2025-11-20 17:26:03] 2025-11-20 22:26:03,017 [wrapper] apfmon messages muted
[2025-11-20 17:26:03] 2025-11-20 22:26:03,025 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:26:03] 2025-11-20 22:26:03,041 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:26:03]  *** Error codes and diagnostics ***
[2025-11-20 17:26:03]     "exeErrorCode": 0,
[2025-11-20 17:26:03]     "exeErrorDiag": "",
[2025-11-20 17:26:03]     "pilotErrorCode": 0,
[2025-11-20 17:26:03]     "pilotErrorDiag": "",
[2025-11-20 17:26:03]  *** Listing of results directory ***
[2025-11-20 17:26:03] total 1318884
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:35 queuedata.json
[2025-11-20 17:26:03] -rwx------. 1 boincer umatlas     36292 Nov 18 10:37 runpilot2-wrapper.sh
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:26:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:01 run_atlas
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:01 job.xml
[2025-11-20 17:26:03] -rw-r--r--. 2 boincer umatlas 408207656 Nov 20 00:01 EVNT.47493065._000207.pool.root.1
[2025-11-20 17:26:03] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:01 start_atlas.sh
[2025-11-20 17:26:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:01 shared
[2025-11-20 17:26:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 00:01 input.tar.gz
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:01 boinc_lockfile
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 00:01 pandaJob.out
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas    989427 Nov 20 00:02 agis_schedconf.cvmfs.json
[2025-11-20 17:26:03] drwx------. 5 boincer umatlas      4096 Nov 20 00:02 pilot3
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas       533 Nov 20 17:14 boinc_task_state.xml
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas      6944 Nov 20 17:19 init_data.xml
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas 917130322 Nov 20 17:23 HITS.47493068._002070.pool.root.1
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas      1070 Nov 20 17:24 memory_monitor_summary.json
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas   1526164 Nov 20 17:24 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas   2629376 Nov 20 17:24 log.47493068._002070.job.log.tgz.1
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas      8635 Nov 20 17:25 heartbeat.json
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas        95 Nov 20 17:25 pilot_heartbeat.json
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas        29 Nov 20 17:26 wrapper_checkpoint.txt
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 17:26 boinc_mmap_file
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas      4823 Nov 20 17:26 pilotlog.txt
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas   8008386 Nov 20 17:26 log.47493068._002070.job.log.1
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas       353 Nov 20 17:26 output.list
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas       620 Nov 20 17:26 runtime_log
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas  10659840 Nov 20 17:26 result.tar.gz
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas      8701 Nov 20 17:26 runtime_log.err
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas       664 Nov 20 17:26 FP3LDmewcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5ZFKDmoufdUo.diag
[2025-11-20 17:26:03] -rw-r--r--. 1 boincer umatlas     21276 Nov 20 17:26 stderr.txt
[2025-11-20 17:26:03] HITS file was successfully produced:
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas 917130322 Nov 20 17:23 shared/HITS.pool.root.1
[2025-11-20 17:26:03]  *** Contents of shared directory: ***
[2025-11-20 17:26:03] total 1305292
[2025-11-20 17:26:03] -rw-r--r--. 2 boincer umatlas 408207656 Nov 20 00:01 ATLAS.root_0
[2025-11-20 17:26:03] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:01 start_atlas.sh
[2025-11-20 17:26:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 00:01 input.tar.gz
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas 917130322 Nov 20 17:23 HITS.pool.root.1
[2025-11-20 17:26:03] -rw-------. 1 boincer umatlas  10659840 Nov 20 17:26 result.tar.gz
17:26:05 (758479): run_atlas exited; CPU time 201984.771267
17:26:05 (758479): called boinc_finish(0)

</stderr_txt>
]]>

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