Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:55:47 (755): wrapper (7.7.26015): starting
01:55:47 (755): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:55:47] Arguments: --nthreads 8
[2025-11-23 01:55:47] Threads: 8
[2025-11-23 01:55:47] Checking for CVMFS
[2025-11-23 01:55:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:55:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:55:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:55:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:55:49] 2.11.2.0 10662 78083 94360 153191 1 128 21275798 25165824 4296 130560 3 24897910 99.899 13163789 2211 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 01:55:49] CVMFS is ok
[2025-11-23 01:55:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:55:49] Checking for apptainer binary...
[2025-11-23 01:55:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:55:49] Running /usr/bin/apptainer --version
[2025-11-23 01:55:51] apptainer version 1.3.2-1.el7
[2025-11-23 01:55:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:56:02] cg-vwn346.simple-grid.lan
[2025-11-23 01:56:02] apptainer works
[2025-11-23 01:56:02] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:56:02] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:56:02] Starting ATLAS job with PandaID=6892549336
[2025-11-23 01:56:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:54:55]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:54:55] 2025-11-24 02:54:10,135 | INFO     | total number of processed events: 1000 (read)
[2025-11-24 03:54:55] 2025-11-24 02:54:10,136 | INFO     | executing command: lscpu
[2025-11-24 03:54:55] 2025-11-24 02:54:10,259 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-24 03:54:55] 2025-11-24 02:54:10,960 | INFO     | time since job start (93268s) is within the limit (172800.0s)
[2025-11-24 03:54:55] 2025-11-24 02:54:12,593 | INFO     | monitor loop #6212: job 0:6892549336 is in state 'finished'
[2025-11-24 03:54:55] 2025-11-24 02:54:12,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:54:55] 2025-11-24 02:54:12,968 | INFO     | time since job start (93270s) is within the limit (172800.0s)
[2025-11-24 03:54:55] 2025-11-24 02:54:14,980 | INFO     | time since job start (93272s) is within the limit (172800.0s)
[2025-11-24 03:54:55] 2025-11-24 02:54:15,101 | INFO     | monitor loop #6213: job 0:6892549336 is in state 'finished'
[2025-11-24 03:54:55] 2025-11-24 02:54:15,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:54:55] 2025-11-24 02:54:16,985 | INFO     | time since job start (93274s) is within the limit (172800.0s)
[2025-11-24 03:54:55] 2025-11-24 02:54:17,608 | INFO     | monitor loop #6214: job 0:6892549336 is in state 'finished'
[2025-11-24 03:54:55] 2025-11-24 02:54:17,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:54:55] 2025-11-24 02:54:18,143 | INFO     | PID=4680 has CPU usage=16.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:54:55] 2025-11-24 02:54:18,144 | INFO     | .. there are 9 such processes running
[2025-11-24 03:54:55] 2025-11-24 02:54:19,145 | INFO     | time since job start (93277s) is within the limit (172800.0s)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,433 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:54:55] 2025-11-24 02:54:19,434 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:54:55] 2025-11-24 02:54:19,436 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6892549336/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,437 | INFO     | extracted standard info from prmon json
[2025-11-24 03:54:55] 2025-11-24 02:54:19,437 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:54:55] 2025-11-24 02:54:19,437 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:54:55] 2025-11-24 02:54:19,466 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:54:55] 2025-11-24 02:54:19,469 | INFO     | sum of square deviations: 1093254318487.6064
[2025-11-24 03:54:55] 2025-11-24 02:54:19,556 | INFO     | sum of deviations: 3433300330260.6475
[2025-11-24 03:54:55] 2025-11-24 02:54:19,557 | INFO     | mean x: 1763906395.8350854
[2025-11-24 03:54:55] 2025-11-24 02:54:19,557 | INFO     | mean y: 2860773.444809461
[2025-11-24 03:54:55] 2025-11-24 02:54:19,557 | INFO     | intersect: -5536582619.513642
[2025-11-24 03:54:55] 2025-11-24 02:54:19,559 | INFO     | chi2: 18.47789348036877
[2025-11-24 03:54:55] 2025-11-24 02:54:19,561 | INFO     | sum of square deviations: 1082515750836.1643
[2025-11-24 03:54:55] 2025-11-24 02:54:19,631 | INFO     | sum of deviations: 3924556372830.7495
[2025-11-24 03:54:55] 2025-11-24 02:54:19,631 | INFO     | mean x: 1763906243.339486
[2025-11-24 03:54:55] 2025-11-24 02:54:19,631 | INFO     | mean y: 2867750.633487146
[2025-11-24 03:54:55] 2025-11-24 02:54:19,631 | INFO     | intersect: -6392004086.590834
[2025-11-24 03:54:55] 2025-11-24 02:54:19,633 | INFO     | chi2: 15.444899318584945
[2025-11-24 03:54:55] 2025-11-24 02:54:19,633 | INFO     | current chi2=15.444899318584945 (change=16.41417710847901 %)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,634 | INFO     | right removable region: 1516
[2025-11-24 03:54:55] 2025-11-24 02:54:19,636 | INFO     | sum of square deviations: 1082514511316.1647
[2025-11-24 03:54:55] 2025-11-24 02:54:19,701 | INFO     | sum of deviations: 2819121134175.8584
[2025-11-24 03:54:55] 2025-11-24 02:54:19,702 | INFO     | mean x: 1763906548.339486
[2025-11-24 03:54:55] 2025-11-24 02:54:19,702 | INFO     | mean y: 2869493.194462755
[2025-11-24 03:54:55] 2025-11-24 02:54:19,702 | INFO     | intersect: -4590755975.2429695
[2025-11-24 03:54:55] 2025-11-24 02:54:19,704 | INFO     | chi2: 14.23371623324344
[2025-11-24 03:54:55] 2025-11-24 02:54:19,705 | INFO     | current chi2=14.23371623324344 (change=22.968945305558865 %)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,705 | INFO     | left removable region: 10
[2025-11-24 03:54:55] 2025-11-24 02:54:19,707 | INFO     | sum of square deviations: 1059136556751.483
[2025-11-24 03:54:55] 2025-11-24 02:54:19,771 | INFO     | sum of deviations: 3073044217219.523
[2025-11-24 03:54:55] 2025-11-24 02:54:19,772 | INFO     | mean x: 1763906517.8486056
[2025-11-24 03:54:55] 2025-11-24 02:54:19,772 | INFO     | mean y: 2883191.7742363876
[2025-11-24 03:54:55] 2025-11-24 02:54:19,772 | INFO     | intersect: -5115024116.624306
[2025-11-24 03:54:55] 2025-11-24 02:54:19,774 | INFO     | chi2: 8.96496494774027
[2025-11-24 03:54:55] 2025-11-24 02:54:19,774 | INFO     | current memory leak: 2.90 B/s (using 1506 data points, chi2=8.96)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,777 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,777 | INFO     | ..............................
[2025-11-24 03:54:55] 2025-11-24 02:54:19,777 | INFO     | . Timing measurements:
[2025-11-24 03:54:55] 2025-11-24 02:54:19,777 | INFO     | . get job = 0 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,777 | INFO     | . initial setup = 7 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,778 | INFO     | . payload setup = 95 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,778 | INFO     | . stage-in = 0 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,778 | INFO     | . payload execution = 92970 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,778 | INFO     | . stage-out = 4 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,778 | INFO     | . log creation = 1 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,778 | INFO     | ..............................
[2025-11-24 03:54:55] 2025-11-24 02:54:19,905 | INFO     | 
[2025-11-24 03:54:55] 2025-11-24 02:54:19,905 | INFO     | job summary report
[2025-11-24 03:54:55] 2025-11-24 02:54:19,905 | INFO     | --------------------------------------------------
[2025-11-24 03:54:55] 2025-11-24 02:54:19,905 | INFO     | PanDA job id: 6892549336
[2025-11-24 03:54:55] 2025-11-24 02:54:19,905 | INFO     | task id: 47493029
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | errors: (none)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | pilot state: finished 
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | transexitcode: 0
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | exeerrorcode: 0
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | exeerrordiag: 
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | exitcode: 0
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | exitmsg: OK
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | cpuconsumptiontime: 345265 s
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | nevents: 1000
[2025-11-24 03:54:55] 2025-11-24 02:54:19,906 | INFO     | neventsw: 0
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | pid: 11494
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | pgrp: 11494
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | corecount: 8
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | event service: False
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | sizes: {0: 2298570, 1: 2298825, 12: 2298825, 23: 2298853, 33: 2298881, 44: 2298937, 55: 2299093, 66: 2299121, 76: 2299149, 87: 2299205, 98: 2299233, 100: 2299803, 
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | --------------------------------------------------
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | 
[2025-11-24 03:54:55] 2025-11-24 02:54:19,907 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-11-24 03:54:55] 2025-11-24 02:54:19,951 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,951 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,951 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,951 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,953 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,953 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,953 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,953 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:54:55] 2025-11-24 02:54:19,953 | INFO     | job 6892549336 has completed (purged errors)
[2025-11-24 03:54:55] 2025-11-24 02:54:19,953 | INFO     | overall cleanup function is called
[2025-11-24 03:54:55] 2025-11-24 02:54:20,975 | INFO     | --- collectZombieJob: --- 10, [11494]
[2025-11-24 03:54:55] 2025-11-24 02:54:20,975 | INFO     | zombie collector waiting for pid 11494
[2025-11-24 03:54:55] 2025-11-24 02:54:20,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:54:55] 2025-11-24 02:54:20,975 | INFO     | collected zombie processes
[2025-11-24 03:54:55] 2025-11-24 02:54:20,975 | INFO     | will attempt to kill all subprocesses of pid=11494
[2025-11-24 03:54:55] 2025-11-24 02:54:21,090 | INFO     | process IDs to be killed: [11494] (in reverse order)
[2025-11-24 03:54:55] 2025-11-24 02:54:21,193 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:54:55] 2025-11-24 02:54:21,194 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:54:55] 2025-11-24 02:54:21,197 | INFO     | did not find any defunct processes belonging to 11494
[2025-11-24 03:54:55] 2025-11-24 02:54:21,201 | INFO     | did not find any defunct processes belonging to 11494
[2025-11-24 03:54:55] 2025-11-24 02:54:21,204 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:54:55] 2025-11-24 02:54:21,205 | INFO     | ready for new job
[2025-11-24 03:54:55] 2025-11-24 02:54:21,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:54:55] 2025-11-24 02:54:21,212 | INFO     | ***************************************
[2025-11-24 03:54:55] 2025-11-24 02:54:21,212 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:54:55] 2025-11-24 02:54:21,213 | INFO     | ***************************************
[2025-11-24 03:54:55] 2025-11-24 02:54:21,213 | INFO     | 
[2025-11-24 03:54:55] 2025-11-24 02:54:21,213 | INFO     | pilot is running in a VM
[2025-11-24 03:54:55] 2025-11-24 02:54:21,214 | INFO     | architecture information:
[2025-11-24 03:54:55] 2025-11-24 02:54:21,214 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:54:55] 2025-11-24 02:54:21,242 | INFO     | cat /etc/os-release:
[2025-11-24 03:54:55] NAME="CentOS Linux"
[2025-11-24 03:54:55] VERSION="7 (Core)"
[2025-11-24 03:54:55] ID="centos"
[2025-11-24 03:54:55] ID_LIKE="rhel fedora"
[2025-11-24 03:54:55] VERSION_ID="7"
[2025-11-24 03:54:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:54:55] ANSI_COLOR="0;31"
[2025-11-24 03:54:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:54:55] HOME_URL="https://www.centos.org/"
[2025-11-24 03:54:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:54:55] 
[2025-11-24 03:54:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:54:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:54:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:54:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:54:55] 
[2025-11-24 03:54:55] 2025-11-24 02:54:21,243 | INFO     | ***************************************
[2025-11-24 03:54:55] 2025-11-24 02:54:21,746 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-11-24 03:54:55] 2025-11-24 02:54:21,780 | INFO     | sufficient remaining disk space (494800994304 B)
[2025-11-24 03:54:55] 2025-11-24 02:54:21,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:54:55] 2025-11-24 02:54:21,780 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:54:55] 2025-11-24 02:54:21,780 | INFO     | update_server=False
[2025-11-24 03:54:55] 2025-11-24 02:54:21,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:54:55] 2025-11-24 02:54:21,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:54:55] 2025-11-24 02:54:21,782 | INFO     | aborting loop
[2025-11-24 03:54:55] 2025-11-24 02:54:21,783 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:54:55] 2025-11-24 02:54:21,896 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:54:55] 2025-11-24 02:54:22,017 | INFO     | all data control threads have been joined
[2025-11-24 03:54:55] 2025-11-24 02:54:22,787 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:22,787 | INFO     | all job control threads have been joined
[2025-11-24 03:54:55] 2025-11-24 02:54:22,788 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:22,789 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:22,802 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:22,920 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:22,944 | INFO     | all payload control threads have been joined
[2025-11-24 03:54:55] 2025-11-24 02:54:23,022 | INFO     | [data] control thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,091 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,092 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,529 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,774 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:54:55] 2025-11-24 02:54:23,796 | INFO     | [job] control thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,855 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,903 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,918 | INFO     | [job] validate thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:23,949 | INFO     | [payload] control thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:24,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:54:55] 2025-11-24 02:54:24,390 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:28,049 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:54:55] 2025-11-24 02:54:28,915 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951406298944)>', '<ExcThread(monitor, started 139950821463808)>']
[2025-11-24 03:54:55] 2025-11-24 02:54:33,941 | INFO     | all workflow threads have been joined
[2025-11-24 03:54:55] 2025-11-24 02:54:33,941 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:54:55] 2025-11-24 02:54:33,941 | INFO     | traces error code: 0
[2025-11-24 03:54:55] 2025-11-24 02:54:33,941 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:54:55] 2025-11-24 02:54:52,321 | INFO     | PID=4680 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:54:55] 2025-11-24 02:54:52,321 | INFO     | .. there are 9 such processes running
[2025-11-24 03:54:55] 2025-11-24 02:54:52,322 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:54:55] 2025-11-24 02:54:52,322 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:54:55] 2025-11-24 02:54:52,322 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:54:55] 2025-11-24 02:54:52,322 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:54:55] 2025-11-24 02:54:52,322 | INFO     | [monitor] control thread has ended
[2025-11-24 03:54:55] 2025-11-24 02:54:52,574 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:54:55] 2025-11-24 02:54:52,632 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:54:55] 2025-11-24 02:54:52,683 [wrapper] pilotpid: 4680
[2025-11-24 03:54:55] 2025-11-24 02:54:52,740 [wrapper] Pilot exit status: 0
[2025-11-24 03:54:55] 2025-11-24 02:54:53,191 [wrapper] pandaids: 6892549336
[2025-11-24 03:54:55] 2025-11-24 02:54:53,296 [wrapper] cleanup supervisor_pilot 27819 4681
[2025-11-24 03:54:55] 2025-11-24 02:54:53,318 [wrapper] Test setup, not cleaning
[2025-11-24 03:54:55] 2025-11-24 02:54:53,362 [wrapper] apfmon messages muted
[2025-11-24 03:54:55] 2025-11-24 02:54:53,394 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:54:55] 2025-11-24 02:54:53,449 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:54:55]  *** Error codes and diagnostics ***
[2025-11-24 03:54:55]     "exeErrorCode": 0,
[2025-11-24 03:54:55]     "exeErrorDiag": "",
[2025-11-24 03:54:55]     "pilotErrorCode": 0,
[2025-11-24 03:54:55]     "pilotErrorDiag": "",
[2025-11-24 03:54:55]  *** Listing of results directory ***
[2025-11-24 03:54:55] total 1342956
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-24 03:54:55] -rwx------. 1 boinc boinc     36292 Nov 19 09:52 runpilot2-wrapper.sh
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:52 queuedata.json
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc       100 Nov 23 01:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:54:55] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 01:55 run_atlas
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc       105 Nov 23 01:55 job.xml
[2025-11-24 03:54:55] -rw-r--r--. 2 boinc boinc 409573586 Nov 23 01:55 EVNT.47493027._000358.pool.root.1
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc      6391 Nov 23 01:55 init_data.xml
[2025-11-24 03:54:55] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:55 start_atlas.sh
[2025-11-24 03:54:55] drwxrwx--x. 2 boinc boinc        68 Nov 23 01:55 shared
[2025-11-24 03:54:55] -rw-r--r--. 2 boinc boinc    590091 Nov 23 01:55 input.tar.gz
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc         0 Nov 23 01:55 boinc_lockfile
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc      2773 Nov 23 01:56 pandaJob.out
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc    989784 Nov 23 01:59 agis_schedconf.cvmfs.json
[2025-11-24 03:54:55] drwx------. 5 boinc boinc      4096 Nov 23 01:59 pilot3
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc       533 Nov 24 03:31 boinc_task_state.xml
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc 931678049 Nov 24 03:53 HITS.47493029._003533.pool.root.1
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc      1031 Nov 24 03:54 memory_monitor_summary.json
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc   1526164 Nov 24 03:54 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc   2591611 Nov 24 03:54 log.47493029._003533.job.log.tgz.1
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc      8626 Nov 24 03:54 heartbeat.json
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:54 boinc_mmap_file
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:54 wrapper_checkpoint.txt
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc        95 Nov 24 03:54 pilot_heartbeat.json
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc       819 Nov 24 03:54 pilotlog.txt
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc  12424507 Nov 24 03:54 log.47493029._003533.job.log.1
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc       353 Nov 24 03:54 output.list
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:54 runtime_log
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc  15032320 Nov 24 03:54 result.tar.gz
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc      8717 Nov 24 03:54 runtime_log.err
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc       662 Nov 24 03:54 pjfKDmO6sf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmy6GKDmS0NB6m.diag
[2025-11-24 03:54:55] -rw-r--r--. 1 boinc boinc     21530 Nov 24 03:54 stderr.txt
[2025-11-24 03:54:55] HITS file was successfully produced:
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc 931678049 Nov 24 03:53 shared/HITS.pool.root.1
[2025-11-24 03:54:55]  *** Contents of shared directory: ***
[2025-11-24 03:54:55] total 1325096
[2025-11-24 03:54:55] -rw-r--r--. 2 boinc boinc 409573586 Nov 23 01:55 ATLAS.root_0
[2025-11-24 03:54:55] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:55 start_atlas.sh
[2025-11-24 03:54:55] -rw-r--r--. 2 boinc boinc    590091 Nov 23 01:55 input.tar.gz
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc 931678049 Nov 24 03:53 HITS.pool.root.1
[2025-11-24 03:54:55] -rw-------. 1 boinc boinc  15032320 Nov 24 03:54 result.tar.gz
03:54:56 (755): run_atlas exited; CPU time 345772.057455
03:54:56 (755): called boinc_finish(0)

</stderr_txt>
]]>

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