Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:45:12 (20090): wrapper (7.7.26015): starting
01:45:12 (20090): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:45:12] Arguments: --nthreads 8
[2025-11-23 01:45:12] Threads: 8
[2025-11-23 01:45:12] Checking for CVMFS
[2025-11-23 01:45:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:45:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:45:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:45:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:45:15] 2.11.2.0 26867 280185 140420 153191 0 234 14710914 25165825 4632 130560 2 134242290 99.878 74047105 2920 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 01:45:15] CVMFS is ok
[2025-11-23 01:45:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:45:15] Checking for apptainer binary...
[2025-11-23 01:45:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:45:15] Running /usr/bin/apptainer --version
[2025-11-23 01:45:15] apptainer version 1.3.2-1.el7
[2025-11-23 01:45:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:45:26] cg-vwn435.simple-grid.lan
[2025-11-23 01:45:26] apptainer works
[2025-11-23 01:45:26] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:45:26] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:45:26] Starting ATLAS job with PandaID=6891593135
[2025-11-23 01:45:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:34:15]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:34:15] 2025-11-24 02:33:01,127 | INFO     | time since job start (92619s) is within the limit (172800.0s)
[2025-11-24 03:34:15] 2025-11-24 02:33:03,114 | INFO     | monitor loop #6223: job 0:6891593135 is in state 'finished'
[2025-11-24 03:34:15] 2025-11-24 02:33:03,115 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:34:15] 2025-11-24 02:33:03,134 | INFO     | time since job start (92621s) is within the limit (172800.0s)
[2025-11-24 03:34:15] 2025-11-24 02:33:05,144 | INFO     | time since job start (92623s) is within the limit (172800.0s)
[2025-11-24 03:34:15] 2025-11-24 02:33:05,620 | INFO     | monitor loop #6224: job 0:6891593135 is in state 'finished'
[2025-11-24 03:34:15] 2025-11-24 02:33:05,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:34:15] 2025-11-24 02:33:07,154 | INFO     | time since job start (92625s) is within the limit (172800.0s)
[2025-11-24 03:34:15] 2025-11-24 02:33:08,125 | INFO     | monitor loop #6225: job 0:6891593135 is in state 'finished'
[2025-11-24 03:34:15] 2025-11-24 02:33:08,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:34:15] 2025-11-24 02:33:09,161 | INFO     | time since job start (92627s) is within the limit (172800.0s)
[2025-11-24 03:34:15] 2025-11-24 02:33:10,630 | INFO     | monitor loop #6226: job 0:6891593135 is in state 'finished'
[2025-11-24 03:34:15] 2025-11-24 02:33:10,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,077 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:34:15] 2025-11-24 02:33:11,079 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:34:15] 2025-11-24 02:33:11,081 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6891593135/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,082 | INFO     | extracted standard info from prmon json
[2025-11-24 03:34:15] 2025-11-24 02:33:11,082 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:34:15] 2025-11-24 02:33:11,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:34:15] 2025-11-24 02:33:11,113 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:34:15] 2025-11-24 02:33:11,116 | INFO     | sum of square deviations: 1065483043927.2258
[2025-11-24 03:34:15] 2025-11-24 02:33:11,176 | INFO     | time since job start (92629s) is within the limit (172800.0s)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,181 | INFO     | sum of deviations: 4022040748473.682
[2025-11-24 03:34:15] 2025-11-24 02:33:11,182 | INFO     | mean x: 1763905478.269715
[2025-11-24 03:34:15] 2025-11-24 02:33:11,182 | INFO     | mean y: 2836190.5487077534
[2025-11-24 03:34:15] 2025-11-24 02:33:11,183 | INFO     | intersect: -6655645847.708222
[2025-11-24 03:34:15] 2025-11-24 02:33:11,184 | INFO     | chi2: 26.629955648582367
[2025-11-24 03:34:15] 2025-11-24 02:33:11,187 | INFO     | sum of square deviations: 1054927411769.1394
[2025-11-24 03:34:15] 2025-11-24 02:33:11,248 | INFO     | sum of deviations: 4539820224822.107
[2025-11-24 03:34:15] 2025-11-24 02:33:11,248 | INFO     | mean x: 1763905325.7739363
[2025-11-24 03:34:15] 2025-11-24 02:33:11,249 | INFO     | mean y: 2843669.03856383
[2025-11-24 03:34:15] 2025-11-24 02:33:11,249 | INFO     | intersect: -7588022757.676657
[2025-11-24 03:34:15] 2025-11-24 02:33:11,250 | INFO     | chi2: 23.1790825372959
[2025-11-24 03:34:15] 2025-11-24 02:33:11,251 | INFO     | current chi2=23.1790825372959 (change=12.958613813801719 %)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,251 | INFO     | right removable region: 1503
[2025-11-24 03:34:15] 2025-11-24 02:33:11,253 | INFO     | sum of square deviations: 1054926243009.1372
[2025-11-24 03:34:15] 2025-11-24 02:33:11,324 | INFO     | sum of deviations: 3374922549464.8647
[2025-11-24 03:34:15] 2025-11-24 02:33:11,325 | INFO     | mean x: 1763905630.7739363
[2025-11-24 03:34:15] 2025-11-24 02:33:11,325 | INFO     | mean y: 2845538.72606383
[2025-11-24 03:34:15] 2025-11-24 02:33:11,325 | INFO     | intersect: -5640245556.861973
[2025-11-24 03:34:15] 2025-11-24 02:33:11,327 | INFO     | chi2: 21.639462957183863
[2025-11-24 03:34:15] 2025-11-24 02:33:11,327 | INFO     | current chi2=21.639462957183863 (change=18.740146462332433 %)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,327 | INFO     | left removable region: 10
[2025-11-24 03:34:15] 2025-11-24 02:33:11,329 | INFO     | sum of square deviations: 1031948596949.1558
[2025-11-24 03:34:15] 2025-11-24 02:33:11,401 | INFO     | sum of deviations: 3412378703235.245
[2025-11-24 03:34:15] 2025-11-24 02:33:11,402 | INFO     | mean x: 1763905600.283322
[2025-11-24 03:34:15] 2025-11-24 02:33:11,402 | INFO     | mean y: 2863008.231078366
[2025-11-24 03:34:15] 2025-11-24 02:33:11,402 | INFO     | intersect: -5829902230.9669285
[2025-11-24 03:34:15] 2025-11-24 02:33:11,404 | INFO     | chi2: 13.610288631614967
[2025-11-24 03:34:15] 2025-11-24 02:33:11,404 | INFO     | current memory leak: 3.31 B/s (using 1493 data points, chi2=13.61)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,407 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,407 | INFO     | ..............................
[2025-11-24 03:34:15] 2025-11-24 02:33:11,407 | INFO     | . Timing measurements:
[2025-11-24 03:34:15] 2025-11-24 02:33:11,407 | INFO     | . get job = 0 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,407 | INFO     | . initial setup = 9 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,407 | INFO     | . payload setup = 172 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,408 | INFO     | . stage-in = 0 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,408 | INFO     | . payload execution = 92151 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,408 | INFO     | . stage-out = 5 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,408 | INFO     | . log creation = 2 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,408 | INFO     | ..............................
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | 
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | job summary report
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | --------------------------------------------------
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | PanDA job id: 6891593135
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | task id: 47493068
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | errors: (none)
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:34:15] 2025-11-24 02:33:11,536 | INFO     | pilot state: finished 
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | transexitcode: 0
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | exeerrorcode: 0
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | exeerrordiag: 
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | exitcode: 0
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | exitmsg: OK
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | cpuconsumptiontime: 341440 s
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | nevents: 1000
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | neventsw: 0
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | pid: 30431
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | pgrp: 30431
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | corecount: 8
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | event service: False
[2025-11-24 03:34:15] 2025-11-24 02:33:11,537 | INFO     | sizes: {0: 2297967, 1: 2298652, 2: 2298851, 13: 2298851, 23: 2298907, 34: 2298935, 45: 2299091, 56: 2299119, 66: 2299147, 77: 2299175, 88: 2299231, 98: 2299801, 99
[2025-11-24 03:34:15] 2025-11-24 02:33:11,538 | INFO     | --------------------------------------------------
[2025-11-24 03:34:15] 2025-11-24 02:33:11,538 | INFO     | 
[2025-11-24 03:34:15] 2025-11-24 02:33:11,538 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-11-24 03:34:15] 2025-11-24 02:33:12,079 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,079 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,079 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:34:15] 2025-11-24 02:33:12,081 | INFO     | job 6891593135 has completed (purged errors)
[2025-11-24 03:34:15] 2025-11-24 02:33:12,082 | INFO     | overall cleanup function is called
[2025-11-24 03:34:15] 2025-11-24 02:33:13,107 | INFO     | --- collectZombieJob: --- 10, [30431]
[2025-11-24 03:34:15] 2025-11-24 02:33:13,108 | INFO     | zombie collector waiting for pid 30431
[2025-11-24 03:34:15] 2025-11-24 02:33:13,108 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:34:15] 2025-11-24 02:33:13,108 | INFO     | collected zombie processes
[2025-11-24 03:34:15] 2025-11-24 02:33:13,108 | INFO     | will attempt to kill all subprocesses of pid=30431
[2025-11-24 03:34:15] 2025-11-24 02:33:13,239 | INFO     | process IDs to be killed: [30431] (in reverse order)
[2025-11-24 03:34:15] 2025-11-24 02:33:14,542 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:34:15] 2025-11-24 02:33:14,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:34:15] 2025-11-24 02:33:14,547 | INFO     | did not find any defunct processes belonging to 30431
[2025-11-24 03:34:15] 2025-11-24 02:33:14,551 | INFO     | did not find any defunct processes belonging to 30431
[2025-11-24 03:34:15] 2025-11-24 02:33:14,609 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:34:15] 2025-11-24 02:33:14,609 | INFO     | ready for new job
[2025-11-24 03:34:15] 2025-11-24 02:33:14,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:34:15] 2025-11-24 02:33:14,616 | INFO     | ***************************************
[2025-11-24 03:34:15] 2025-11-24 02:33:14,617 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:34:15] 2025-11-24 02:33:14,617 | INFO     | ***************************************
[2025-11-24 03:34:15] 2025-11-24 02:33:14,617 | INFO     | 
[2025-11-24 03:34:15] 2025-11-24 02:33:14,618 | INFO     | pilot is running in a VM
[2025-11-24 03:34:15] 2025-11-24 02:33:14,618 | INFO     | architecture information:
[2025-11-24 03:34:15] 2025-11-24 02:33:14,629 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:34:15] 2025-11-24 02:33:14,874 | INFO     | cat /etc/os-release:
[2025-11-24 03:34:15] NAME="CentOS Linux"
[2025-11-24 03:34:15] VERSION="7 (Core)"
[2025-11-24 03:34:15] ID="centos"
[2025-11-24 03:34:15] ID_LIKE="rhel fedora"
[2025-11-24 03:34:15] VERSION_ID="7"
[2025-11-24 03:34:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:34:15] ANSI_COLOR="0;31"
[2025-11-24 03:34:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:34:15] HOME_URL="https://www.centos.org/"
[2025-11-24 03:34:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:34:15] 
[2025-11-24 03:34:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:34:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:34:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:34:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:34:15] 
[2025-11-24 03:34:15] 2025-11-24 02:33:14,874 | INFO     | ***************************************
[2025-11-24 03:34:15] 2025-11-24 02:33:15,378 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-11-24 03:34:15] 2025-11-24 02:33:15,647 | INFO     | sufficient remaining disk space (494876491776 B)
[2025-11-24 03:34:15] 2025-11-24 02:33:15,648 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:34:15] 2025-11-24 02:33:15,648 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:34:15] 2025-11-24 02:33:15,648 | INFO     | update_server=False
[2025-11-24 03:34:15] 2025-11-24 02:33:15,648 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:34:15] 2025-11-24 02:33:15,649 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:34:15] 2025-11-24 02:33:15,657 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-24 03:34:15] 2025-11-24 02:33:15,658 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-24 03:34:15] 2025-11-24 02:33:15,658 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:34:15] 2025-11-24 02:33:15,658 | INFO     | will abort loop
[2025-11-24 03:34:15] 2025-11-24 02:33:15,712 | INFO     | all payload control threads have been joined
[2025-11-24 03:34:15] 2025-11-24 02:33:16,250 | INFO     | all data control threads have been joined
[2025-11-24 03:34:15] 2025-11-24 02:33:16,311 | INFO     | all job control threads have been joined
[2025-11-24 03:34:15] 2025-11-24 02:33:16,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:34:15] 2025-11-24 02:33:16,655 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:16,665 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:16,719 | INFO     | [payload] control thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:16,840 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:16,889 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:16,899 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,257 | INFO     | [data] control thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,317 | INFO     | [job] control thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,491 | INFO     | [job] validate thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,557 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,599 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,656 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,789 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:17,960 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:18,074 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:18,387 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:34:15] 2025-11-24 02:33:22,396 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:34:15] 2025-11-24 02:33:44,416 | INFO     | PID=23871 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:34:15] 2025-11-24 02:33:44,416 | INFO     | .. there are 9 such processes running
[2025-11-24 03:34:15] 2025-11-24 02:33:44,417 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:34:15] 2025-11-24 02:33:44,417 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:34:15] 2025-11-24 02:33:44,417 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:34:15] 2025-11-24 02:34:03,651 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:34:15] 2025-11-24 02:34:05,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140675213158208)>', '<ExcThread(monitor, started 140674766710528)>']
[2025-11-24 03:34:15] 2025-11-24 02:34:05,540 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:34:15] 2025-11-24 02:34:05,541 | INFO     | [monitor] control thread has ended
[2025-11-24 03:34:15] 2025-11-24 02:34:10,408 | INFO     | all workflow threads have been joined
[2025-11-24 03:34:15] 2025-11-24 02:34:10,409 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:34:15] 2025-11-24 02:34:10,409 | INFO     | traces error code: 0
[2025-11-24 03:34:15] 2025-11-24 02:34:10,410 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:34:15] 2025-11-24 02:34:10,988 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:34:15] 2025-11-24 02:34:11,103 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:34:15] 2025-11-24 02:34:11,198 [wrapper] pilotpid: 23871
[2025-11-24 03:34:15] 2025-11-24 02:34:11,296 [wrapper] Pilot exit status: 0
[2025-11-24 03:34:15] 2025-11-24 02:34:11,742 [wrapper] pandaids: 6891593135
[2025-11-24 03:34:15] 2025-11-24 02:34:12,770 [wrapper] cleanup supervisor_pilot 29088 23872
[2025-11-24 03:34:15] 2025-11-24 02:34:12,863 [wrapper] Test setup, not cleaning
[2025-11-24 03:34:15] 2025-11-24 02:34:12,955 [wrapper] apfmon messages muted
[2025-11-24 03:34:15] 2025-11-24 02:34:13,058 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:34:15] 2025-11-24 02:34:13,118 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:34:15]  *** Error codes and diagnostics ***
[2025-11-24 03:34:15]     "exeErrorCode": 0,
[2025-11-24 03:34:15]     "exeErrorDiag": "",
[2025-11-24 03:34:15]     "pilotErrorCode": 0,
[2025-11-24 03:34:15]     "pilotErrorDiag": "",
[2025-11-24 03:34:15]  *** Listing of results directory ***
[2025-11-24 03:34:15] total 1328964
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:27 pilot3.tar.gz
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:30 queuedata.json
[2025-11-24 03:34:15] -rwx------. 1 boinc boinc     36292 Nov 18 19:32 runpilot2-wrapper.sh
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc       100 Nov 23 01:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:34:15] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 01:45 run_atlas
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc       105 Nov 23 01:45 job.xml
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc      6390 Nov 23 01:45 init_data.xml
[2025-11-24 03:34:15] -rw-r--r--. 2 boinc boinc 409787601 Nov 23 01:45 EVNT.47493065._000749.pool.root.1
[2025-11-24 03:34:15] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:45 start_atlas.sh
[2025-11-24 03:34:15] drwxrwx--x. 2 boinc boinc        68 Nov 23 01:45 shared
[2025-11-24 03:34:15] -rw-r--r--. 2 boinc boinc    590099 Nov 23 01:45 input.tar.gz
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc         0 Nov 23 01:45 boinc_lockfile
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc      2772 Nov 23 01:45 pandaJob.out
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc    989784 Nov 23 01:49 agis_schedconf.cvmfs.json
[2025-11-24 03:34:15] drwx------. 5 boinc boinc      4096 Nov 23 01:49 pilot3
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc       533 Nov 24 03:06 boinc_task_state.xml
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc 917222713 Nov 24 03:30 HITS.47493068._006135.pool.root.1
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc      1031 Nov 24 03:31 memory_monitor_summary.json
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc   1526164 Nov 24 03:31 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc   2590240 Nov 24 03:31 log.47493068._006135.job.log.tgz.1
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc      8630 Nov 24 03:33 heartbeat.json
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc        95 Nov 24 03:33 pilot_heartbeat.json
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:33 boinc_mmap_file
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:34 wrapper_checkpoint.txt
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc      5070 Nov 24 03:34 pilotlog.txt
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc  12377192 Nov 24 03:34 log.47493068._006135.job.log.1
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc       353 Nov 24 03:34 output.list
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:34 runtime_log
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc  14991360 Nov 24 03:34 result.tar.gz
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc      8703 Nov 24 03:34 runtime_log.err
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc       662 Nov 24 03:34 7mONDm1fff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDGGKDmgDGDIo.diag
[2025-11-24 03:34:15] -rw-r--r--. 1 boinc boinc     21413 Nov 24 03:34 stderr.txt
[2025-11-24 03:34:15] HITS file was successfully produced:
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc 917222713 Nov 24 03:30 shared/HITS.pool.root.1
[2025-11-24 03:34:15]  *** Contents of shared directory: ***
[2025-11-24 03:34:15] total 1311148
[2025-11-24 03:34:15] -rw-r--r--. 2 boinc boinc 409787601 Nov 23 01:45 ATLAS.root_0
[2025-11-24 03:34:15] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:45 start_atlas.sh
[2025-11-24 03:34:15] -rw-r--r--. 2 boinc boinc    590099 Nov 23 01:45 input.tar.gz
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc 917222713 Nov 24 03:30 HITS.pool.root.1
[2025-11-24 03:34:15] -rw-------. 1 boinc boinc  14991360 Nov 24 03:34 result.tar.gz
03:34:17 (20090): run_atlas exited; CPU time 342010.485536
03:34:17 (20090): called boinc_finish(0)

</stderr_txt>
]]>

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