Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:00:50 (18889): wrapper (7.7.26015): starting
02:00:50 (18889): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 02:00:50] Arguments: --nthreads 8
[2025-11-23 02:00:50] Threads: 8
[2025-11-23 02:00:50] Checking for CVMFS
[2025-11-23 02:00:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 02:00:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 02:00:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 02:00:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 02:00:53] 2.11.2.0 3755 280397 140164 153191 0 85 17811341 25165825 4632 130560 2 138245660 99.893 72227600 3225 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 02:00:53] CVMFS is ok
[2025-11-23 02:00:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 02:00:53] Checking for apptainer binary...
[2025-11-23 02:00:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 02:00:53] Running /usr/bin/apptainer --version
[2025-11-23 02:00:53] apptainer version 1.3.2-1.el7
[2025-11-23 02:00:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 02:01:13] cg-vwn224.simple-grid.lan
[2025-11-23 02:01:13] apptainer works
[2025-11-23 02:01:13] Set ATHENA_PROC_NUMBER=8
[2025-11-23 02:01:13] Set ATHENA_CORE_NUMBER=8
[2025-11-23 02:01:13] Starting ATLAS job with PandaID=6891601682
[2025-11-23 02:01:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:20:41]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:20:41] 2025-11-24 02:19:22,046 | INFO     | monitor loop #6072: job 0:6891601682 is in state 'finished'
[2025-11-24 03:20:41] 2025-11-24 02:19:22,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:20:41] 2025-11-24 02:19:23,412 | INFO     | time since job start (90868s) is within the limit (172800.0s)
[2025-11-24 03:20:41] 2025-11-24 02:19:24,559 | INFO     | monitor loop #6073: job 0:6891601682 is in state 'finished'
[2025-11-24 03:20:41] 2025-11-24 02:19:24,560 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:20:41] 2025-11-24 02:19:25,421 | INFO     | time since job start (90870s) is within the limit (172800.0s)
[2025-11-24 03:20:41] 2025-11-24 02:19:27,068 | INFO     | monitor loop #6074: job 0:6891601682 is in state 'finished'
[2025-11-24 03:20:41] 2025-11-24 02:19:27,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:20:41] 2025-11-24 02:19:27,428 | INFO     | time since job start (90872s) is within the limit (172800.0s)
[2025-11-24 03:20:41] 2025-11-24 02:19:29,435 | INFO     | time since job start (90874s) is within the limit (172800.0s)
[2025-11-24 03:20:41] 2025-11-24 02:19:29,436 | INFO     | 90881s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-24 03:20:41] 2025-11-24 02:19:29,581 | INFO     | monitor loop #6075: job 0:6891601682 is in state 'finished'
[2025-11-24 03:20:41] 2025-11-24 02:19:29,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:20:41] 2025-11-24 02:19:31,442 | INFO     | time since job start (90876s) is within the limit (172800.0s)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,092 | INFO     | monitor loop #6076: job 0:6891601682 is in state 'finished'
[2025-11-24 03:20:41] 2025-11-24 02:19:32,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,329 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:20:41] 2025-11-24 02:19:32,330 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:20:41] 2025-11-24 02:19:32,331 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6891601682/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,332 | INFO     | extracted standard info from prmon json
[2025-11-24 03:20:41] 2025-11-24 02:19:32,332 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:20:41] 2025-11-24 02:19:32,332 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:20:41] 2025-11-24 02:19:32,360 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:20:41] 2025-11-24 02:19:32,363 | INFO     | sum of square deviations: 1007264424047.3716
[2025-11-24 03:20:41] 2025-11-24 02:19:32,437 | INFO     | sum of deviations: 3604250949856.1836
[2025-11-24 03:20:41] 2025-11-24 02:19:32,437 | INFO     | mean x: 1763905577.3146522
[2025-11-24 03:20:41] 2025-11-24 02:19:32,438 | INFO     | mean y: 2848824.355840648
[2025-11-24 03:20:41] 2025-11-24 02:19:32,438 | INFO     | intersect: -6308858608.879148
[2025-11-24 03:20:41] 2025-11-24 02:19:32,439 | INFO     | chi2: 21.434291273579348
[2025-11-24 03:20:41] 2025-11-24 02:19:32,442 | INFO     | sum of square deviations: 997097552818.7003
[2025-11-24 03:20:41] 2025-11-24 02:19:32,511 | INFO     | sum of deviations: 4119412930926.215
[2025-11-24 03:20:41] 2025-11-24 02:19:32,511 | INFO     | mean x: 1763905424.8191056
[2025-11-24 03:20:41] 2025-11-24 02:19:32,512 | INFO     | mean y: 2856551.5176151763
[2025-11-24 03:20:41] 2025-11-24 02:19:32,512 | INFO     | intersect: -7284549575.786286
[2025-11-24 03:20:41] 2025-11-24 02:19:32,513 | INFO     | chi2: 17.94806142958927
[2025-11-24 03:20:41] 2025-11-24 02:19:32,514 | INFO     | current chi2=17.94806142958927 (change=16.264731124034533 %)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,514 | INFO     | right removable region: 1475
[2025-11-24 03:20:41] 2025-11-24 02:19:32,516 | INFO     | sum of square deviations: 997096365148.7017
[2025-11-24 03:20:41] 2025-11-24 02:19:32,591 | INFO     | sum of deviations: 2994458500136.0747
[2025-11-24 03:20:41] 2025-11-24 02:19:32,592 | INFO     | mean x: 1763905729.8191056
[2025-11-24 03:20:41] 2025-11-24 02:19:32,592 | INFO     | mean y: 2857969.5433604335
[2025-11-24 03:20:41] 2025-11-24 02:19:32,593 | INFO     | intersect: -5294466031.139188
[2025-11-24 03:20:41] 2025-11-24 02:19:32,594 | INFO     | chi2: 16.932677864135467
[2025-11-24 03:20:41] 2025-11-24 02:19:32,594 | INFO     | current chi2=16.932677864135467 (change=21.00192328258936 %)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,595 | INFO     | left removable region: 10
[2025-11-24 03:20:41] 2025-11-24 02:19:32,597 | INFO     | sum of square deviations: 974969389951.4166
[2025-11-24 03:20:41] 2025-11-24 02:19:32,654 | INFO     | sum of deviations: 3067686299068.1304
[2025-11-24 03:20:41] 2025-11-24 02:19:32,655 | INFO     | mean x: 1763905699.3290102
[2025-11-24 03:20:41] 2025-11-24 02:19:32,655 | INFO     | mean y: 2875830.756996587
[2025-11-24 03:20:41] 2025-11-24 02:19:32,655 | INFO     | intersect: -5547154152.183733
[2025-11-24 03:20:41] 2025-11-24 02:19:32,657 | INFO     | chi2: 9.026713023958578
[2025-11-24 03:20:41] 2025-11-24 02:19:32,657 | INFO     | current memory leak: 3.15 B/s (using 1465 data points, chi2=9.03)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,659 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | ..............................
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . Timing measurements:
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . get job = 0 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . initial setup = 7 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . payload setup = 181 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . stage-in = 0 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . payload execution = 90479 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . stage-out = 3 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | . log creation = 1 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,660 | INFO     | ..............................
[2025-11-24 03:20:41] 2025-11-24 02:19:32,978 | INFO     | 
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | job summary report
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | --------------------------------------------------
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | PanDA job id: 6891601682
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | task id: 47493068
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | errors: (none)
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | pilot state: finished 
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | transexitcode: 0
[2025-11-24 03:20:41] 2025-11-24 02:19:32,979 | INFO     | exeerrorcode: 0
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | exeerrordiag: 
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | exitcode: 0
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | exitmsg: OK
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | cpuconsumptiontime: 335991 s
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | nevents: 1000
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | neventsw: 0
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | pid: 29287
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | pgrp: 29287
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | corecount: 8
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | event service: False
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 24: 2298908, 34: 2298936, 45: 2299092, 56: 2299120, 67: 2299148, 77: 2299176, 88: 2299232, 98: 2299802, 99
[2025-11-24 03:20:41] 2025-11-24 02:19:32,980 | INFO     | --------------------------------------------------
[2025-11-24 03:20:41] 2025-11-24 02:19:32,981 | INFO     | 
[2025-11-24 03:20:41] 2025-11-24 02:19:32,981 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-11-24 03:20:41] 2025-11-24 02:19:33,041 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,041 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,041 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,042 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | job 6891601682 has completed (purged errors)
[2025-11-24 03:20:41] 2025-11-24 02:19:33,043 | INFO     | overall cleanup function is called
[2025-11-24 03:20:41] 2025-11-24 02:19:34,064 | INFO     | --- collectZombieJob: --- 10, [29287]
[2025-11-24 03:20:41] 2025-11-24 02:19:34,065 | INFO     | zombie collector waiting for pid 29287
[2025-11-24 03:20:41] 2025-11-24 02:19:34,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:20:41] 2025-11-24 02:19:34,065 | INFO     | collected zombie processes
[2025-11-24 03:20:41] 2025-11-24 02:19:34,065 | INFO     | will attempt to kill all subprocesses of pid=29287
[2025-11-24 03:20:41] 2025-11-24 02:19:34,184 | INFO     | process IDs to be killed: [29287] (in reverse order)
[2025-11-24 03:20:41] 2025-11-24 02:19:34,249 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:20:41] 2025-11-24 02:19:34,250 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:20:41] 2025-11-24 02:19:34,253 | INFO     | did not find any defunct processes belonging to 29287
[2025-11-24 03:20:41] 2025-11-24 02:19:34,256 | INFO     | did not find any defunct processes belonging to 29287
[2025-11-24 03:20:41] 2025-11-24 02:19:34,279 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:20:41] 2025-11-24 02:19:34,279 | INFO     | ready for new job
[2025-11-24 03:20:41] 2025-11-24 02:19:34,279 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:20:41] 2025-11-24 02:19:34,285 | INFO     | ***************************************
[2025-11-24 03:20:41] 2025-11-24 02:19:34,286 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:20:41] 2025-11-24 02:19:34,286 | INFO     | ***************************************
[2025-11-24 03:20:41] 2025-11-24 02:19:34,286 | INFO     | 
[2025-11-24 03:20:41] 2025-11-24 02:19:34,286 | INFO     | pilot is running in a VM
[2025-11-24 03:20:41] 2025-11-24 02:19:34,287 | INFO     | architecture information:
[2025-11-24 03:20:41] 2025-11-24 02:19:34,288 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:20:41] 2025-11-24 02:19:34,327 | INFO     | cat /etc/os-release:
[2025-11-24 03:20:41] NAME="CentOS Linux"
[2025-11-24 03:20:41] VERSION="7 (Core)"
[2025-11-24 03:20:41] ID="centos"
[2025-11-24 03:20:41] ID_LIKE="rhel fedora"
[2025-11-24 03:20:41] VERSION_ID="7"
[2025-11-24 03:20:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:20:41] ANSI_COLOR="0;31"
[2025-11-24 03:20:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:20:41] HOME_URL="https://www.centos.org/"
[2025-11-24 03:20:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:20:41] 
[2025-11-24 03:20:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:20:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:20:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:20:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:20:41] 
[2025-11-24 03:20:41] 2025-11-24 02:19:34,328 | INFO     | ***************************************
[2025-11-24 03:20:41] 2025-11-24 02:19:34,832 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-11-24 03:20:41] 2025-11-24 02:19:34,983 | INFO     | sufficient remaining disk space (495188967424 B)
[2025-11-24 03:20:41] 2025-11-24 02:19:34,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:20:41] 2025-11-24 02:19:34,984 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:20:41] 2025-11-24 02:19:34,984 | INFO     | update_server=False
[2025-11-24 03:20:41] 2025-11-24 02:19:34,984 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:20:41] 2025-11-24 02:19:34,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:20:41] 2025-11-24 02:19:35,334 | INFO     | all data control threads have been joined
[2025-11-24 03:20:41] 2025-11-24 02:19:35,607 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:20:41] 2025-11-24 02:19:35,608 | INFO     | aborting loop
[2025-11-24 03:20:41] 2025-11-24 02:19:35,989 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,153 | INFO     | all payload control threads have been joined
[2025-11-24 03:20:41] 2025-11-24 02:19:36,204 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,249 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,261 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,290 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:20:41] 2025-11-24 02:19:36,339 | INFO     | [data] control thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,613 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,671 | INFO     | all job control threads have been joined
[2025-11-24 03:20:41] 2025-11-24 02:19:36,926 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:36,998 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:37,017 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:37,097 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:37,159 | INFO     | [payload] control thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:37,182 | INFO     | [job] validate thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:37,677 | INFO     | [job] control thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:37,813 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:20:41] 2025-11-24 02:19:38,819 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:19:40,305 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:20:41] 2025-11-24 02:20:04,617 | INFO     | PID=22715 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 03:20:41] 2025-11-24 02:20:04,617 | INFO     | .. there are 9 such processes running
[2025-11-24 03:20:41] 2025-11-24 02:20:04,619 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:20:41] 2025-11-24 02:20:04,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:20:41] 2025-11-24 02:20:04,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:20:41] 2025-11-24 02:20:34,109 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:20:41] 2025-11-24 02:20:35,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140494585243456)>', '<ExcThread(monitor, started 140493874784000)>']
[2025-11-24 03:20:41] 2025-11-24 02:20:35,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:20:41] 2025-11-24 02:20:35,805 | INFO     | [monitor] control thread has ended
[2025-11-24 03:20:41] 2025-11-24 02:20:40,631 | INFO     | all workflow threads have been joined
[2025-11-24 03:20:41] 2025-11-24 02:20:40,632 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:20:41] 2025-11-24 02:20:40,632 | INFO     | traces error code: 0
[2025-11-24 03:20:41] 2025-11-24 02:20:40,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:20:41] 2025-11-24 02:20:40,980 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:20:41] 2025-11-24 02:20:40,987 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:20:41] 2025-11-24 02:20:40,996 [wrapper] pilotpid: 22715
[2025-11-24 03:20:41] 2025-11-24 02:20:41,001 [wrapper] Pilot exit status: 0
[2025-11-24 03:20:41] 2025-11-24 02:20:41,069 [wrapper] pandaids: 6891601682
[2025-11-24 03:20:41] 2025-11-24 02:20:41,157 [wrapper] cleanup supervisor_pilot  2869 22716
[2025-11-24 03:20:41] 2025-11-24 02:20:41,248 [wrapper] Test setup, not cleaning
[2025-11-24 03:20:41] 2025-11-24 02:20:41,281 [wrapper] apfmon messages muted
[2025-11-24 03:20:41] 2025-11-24 02:20:41,304 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:20:41] 2025-11-24 02:20:41,333 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:20:41]  *** Error codes and diagnostics ***
[2025-11-24 03:20:41]     "exeErrorCode": 0,
[2025-11-24 03:20:41]     "exeErrorDiag": "",
[2025-11-24 03:20:41]     "pilotErrorCode": 0,
[2025-11-24 03:20:41]     "pilotErrorDiag": "",
[2025-11-24 03:20:41]  *** Listing of results directory ***
[2025-11-24 03:20:41] total 1322164
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc      5112 Nov 18 20:15 queuedata.json
[2025-11-24 03:20:41] -rwx------. 1 boinc boinc     36292 Nov 18 20:17 runpilot2-wrapper.sh
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc       100 Nov 23 02:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:20:41] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 02:00 run_atlas
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc       105 Nov 23 02:00 job.xml
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc      6391 Nov 23 02:00 init_data.xml
[2025-11-24 03:20:41] -rw-r--r--. 2 boinc boinc 408957850 Nov 23 02:00 EVNT.47493065._000844.pool.root.1
[2025-11-24 03:20:41] -rw-r--r--. 2 boinc boinc     15120 Nov 23 02:00 start_atlas.sh
[2025-11-24 03:20:41] drwxrwx--x. 2 boinc boinc        68 Nov 23 02:00 shared
[2025-11-24 03:20:41] -rw-r--r--. 2 boinc boinc    590099 Nov 23 02:00 input.tar.gz
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc         0 Nov 23 02:00 boinc_lockfile
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc      2773 Nov 23 02:01 pandaJob.out
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc    989784 Nov 23 02:04 agis_schedconf.cvmfs.json
[2025-11-24 03:20:41] drwx------. 5 boinc boinc      4096 Nov 23 02:04 pilot3
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc       533 Nov 24 02:58 boinc_task_state.xml
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc 911746640 Nov 24 03:18 HITS.47493068._007086.pool.root.1
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc      1029 Nov 24 03:19 memory_monitor_summary.json
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc   1526164 Nov 24 03:19 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc   2552765 Nov 24 03:19 log.47493068._007086.job.log.tgz.1
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc      8628 Nov 24 03:19 heartbeat.json
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc        95 Nov 24 03:20 pilot_heartbeat.json
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:20 boinc_mmap_file
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:20 wrapper_checkpoint.txt
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc      4884 Nov 24 03:20 pilotlog.txt
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc  12087133 Nov 24 03:20 log.47493068._007086.job.log.1
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc       353 Nov 24 03:20 output.list
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:20 runtime_log
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc  14663680 Nov 24 03:20 result.tar.gz
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc       662 Nov 24 03:20 TOBODmdNgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9QGKDmmuYyEo.diag
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc      8703 Nov 24 03:20 runtime_log.err
[2025-11-24 03:20:41] -rw-r--r--. 1 boinc boinc     21458 Nov 24 03:20 stderr.txt
[2025-11-24 03:20:41] HITS file was successfully produced:
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc 911746640 Nov 24 03:18 shared/HITS.pool.root.1
[2025-11-24 03:20:41]  *** Contents of shared directory: ***
[2025-11-24 03:20:41] total 1304672
[2025-11-24 03:20:41] -rw-r--r--. 2 boinc boinc 408957850 Nov 23 02:00 ATLAS.root_0
[2025-11-24 03:20:41] -rw-r--r--. 2 boinc boinc     15120 Nov 23 02:00 start_atlas.sh
[2025-11-24 03:20:41] -rw-r--r--. 2 boinc boinc    590099 Nov 23 02:00 input.tar.gz
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc 911746640 Nov 24 03:18 HITS.pool.root.1
[2025-11-24 03:20:41] -rw-------. 1 boinc boinc  14663680 Nov 24 03:20 result.tar.gz
03:20:43 (18889): run_atlas exited; CPU time 336538.999779
03:20:43 (18889): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN