Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:15:58 (4177417): wrapper (7.7.26015): starting
23:15:58 (4177417): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 23:15:58] Arguments: --nthreads 3
[2025-11-19 23:15:58] Threads: 3
[2025-11-19 23:15:58] Checking for CVMFS
[2025-11-19 23:16:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 23:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 23:16:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 23:16:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 23:16:00] 2.9.2.0 4177612 0 30032 153059 4 1 34353842 36864000 0 130560 0 0 0.000 1292 27489 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 23:16:00] CVMFS is ok
[2025-11-19 23:16:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 23:16:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 23:16:00] Further information can be found at the LHC@home message board.
[2025-11-19 23:16:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 23:16:00] Checking for apptainer binary...
[2025-11-19 23:16:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 23:16:00] Running /usr/bin/apptainer --version
[2025-11-19 23:16:00] apptainer version 1.4.1-1.1
[2025-11-19 23:16:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 23:16:00] thA335
[2025-11-19 23:16:00] apptainer works
[2025-11-19 23:16:00] Set ATHENA_PROC_NUMBER=3
[2025-11-19 23:16:00] Set ATHENA_CORE_NUMBER=3
[2025-11-19 23:16:00] Starting ATLAS job with PandaID=6891601682
[2025-11-19 23:16:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 23:20:23]  *** The last 200 lines of the pilot log: ***
[2025-11-19 23:20:23] 2025-11-19 22:19:36,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 23:20:23] 2025-11-19 22:19:36,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 23:20:23] 2025-11-19 22:19:36,464 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 23:20:23] 2025-11-19 22:19:36,511 | INFO     | all job control threads have been joined
[2025-11-19 23:20:23] 2025-11-19 22:19:36,605 | INFO     | all data control threads have been joined
[2025-11-19 23:20:23] 2025-11-19 22:19:36,934 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 23:20:23] 2025-11-19 22:19:36,935 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 23:20:23] 2025-11-19 22:19:36,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 23:20:23] 2025-11-19 22:19:36,935 | INFO     | will abort loop
[2025-11-19 23:20:23] 2025-11-19 22:19:37,038 | INFO     | all payload control threads have been joined
[2025-11-19 23:20:23] 2025-11-19 22:19:37,469 | INFO     | [job] retrieve thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:37,469 | INFO     | [job] queue monitor thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:37,517 | INFO     | [job] control thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:37,610 | INFO     | [data] control thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:37,914 | INFO     | [payload] validate_post thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:37,941 | INFO     | [job] job monitor thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:37,991 | INFO     | [job] validate thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,044 | INFO     | [payload] control thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,055 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,121 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,264 | INFO     | [data] copytool_in thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,449 | INFO     | [payload] failed_post thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,469 | INFO     | [data] copytool_out thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,707 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 23:20:23] 2025-11-19 22:19:38,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:38,852 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:19:42,714 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 23:20:23] 2025-11-19 22:20:16,845 | INFO     | [monitor] cgroup control has ended
[2025-11-19 23:20:23] 2025-11-19 22:20:18,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528093906752)>', '<ExcThread(monitor, started 140527739582208)>']
[2025-11-19 23:20:23] 2025-11-19 22:20:18,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 23:20:23] 2025-11-19 22:20:18,686 | INFO     | [monitor] control thread has ended
[2025-11-19 23:20:23] 2025-11-19 22:20:23,559 | INFO     | all workflow threads have been joined
[2025-11-19 23:20:23] 2025-11-19 22:20:23,559 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 23:20:23] 2025-11-19 22:20:23,560 | INFO     | traces error code: 0
[2025-11-19 23:20:23] 2025-11-19 22:20:23,560 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 23:20:23] 2025-11-19 22:20:23,607 [wrapper] ==== pilot stdout END ====
[2025-11-19 23:20:23] 2025-11-19 22:20:23,610 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 23:20:23] 2025-11-19 22:20:23,613 [wrapper] pilotpid: 4181698
[2025-11-19 23:20:23] 2025-11-19 22:20:23,616 [wrapper] Pilot exit status: 0
[2025-11-19 23:20:23] 2025-11-19 22:20:23,623 [wrapper] pandaids: 6891601682
[2025-11-19 23:20:23] 2025-11-19 22:20:23,640 [wrapper] cleanup supervisor_pilot 4181704 4181699
[2025-11-19 23:20:23] 2025-11-19 22:20:23,642 [wrapper] Test setup, not cleaning
[2025-11-19 23:20:23] 2025-11-19 22:20:23,645 [wrapper] apfmon messages muted
[2025-11-19 23:20:23] 2025-11-19 22:20:23,648 [wrapper] ==== wrapper stdout END ====
[2025-11-19 23:20:23] 2025-11-19 22:20:23,651 [wrapper] ==== wrapper stderr END ====
[2025-11-19 23:20:23]  *** Error codes and diagnostics ***
[2025-11-19 23:20:23]     "exeErrorCode": 65,
[2025-11-19 23:20:23]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 23:20:23]     "pilotErrorCode": 1305,
[2025-11-19 23:20:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 23:20:23]  *** Listing of results directory ***
[2025-11-19 23:20:23] total 403480
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc      5112 Nov 18 20:15 queuedata.json
[2025-11-19 23:20:23] -rwx------ 1 boinc boinc     36292 Nov 18 20:17 runpilot2-wrapper.sh
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc       100 Nov 19 23:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 23:20:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 23:15 run_atlas
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc       105 Nov 19 23:15 job.xml
[2025-11-19 23:20:23] -rw-r--r-- 2 boinc boinc 408957850 Nov 19 23:15 EVNT.47493065._000844.pool.root.1
[2025-11-19 23:20:23] -rw-r--r-- 2 boinc boinc    590099 Nov 19 23:15 input.tar.gz
[2025-11-19 23:20:23] -rw-r--r-- 2 boinc boinc     15120 Nov 19 23:15 start_atlas.sh
[2025-11-19 23:20:23] drwxrwx--x 2 boinc boinc      4096 Nov 19 23:15 shared
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc         0 Nov 19 23:15 boinc_setup_complete
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc      6194 Nov 19 23:15 init_data.xml
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc         0 Nov 19 23:15 boinc_lockfile
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc      2773 Nov 19 23:16 pandaJob.out
[2025-11-19 23:20:23] -rw------- 1 boinc boinc    989435 Nov 19 23:16 agis_schedconf.cvmfs.json
[2025-11-19 23:20:23] -rw------- 1 boinc boinc   1525063 Nov 19 23:16 agis_ddmendpoints.agis.ALL.json
[2025-11-19 23:20:23] drwx------ 5 boinc boinc      4096 Nov 19 23:16 pilot3
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc       523 Nov 19 23:17 boinc_task_state.xml
[2025-11-19 23:20:23] -rw------- 1 boinc boinc       956 Nov 19 23:17 memory_monitor_summary.json
[2025-11-19 23:20:23] -rw------- 1 boinc boinc     55688 Nov 19 23:17 log.47493068._007086.job.log.tgz.1
[2025-11-19 23:20:23] -rw------- 1 boinc boinc        95 Nov 19 23:19 pilot_heartbeat.json
[2025-11-19 23:20:23] -rw------- 1 boinc boinc      8402 Nov 19 23:19 heartbeat.json
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc      8192 Nov 19 23:20 boinc_mmap_file
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc        23 Nov 19 23:20 wrapper_checkpoint.txt
[2025-11-19 23:20:23] -rw------- 1 boinc boinc      4742 Nov 19 23:20 pilotlog.txt
[2025-11-19 23:20:23] -rw------- 1 boinc boinc     94062 Nov 19 23:20 log.47493068._007086.job.log.1
[2025-11-19 23:20:23] -rw------- 1 boinc boinc       186 Nov 19 23:20 output.list
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc       620 Nov 19 23:20 runtime_log
[2025-11-19 23:20:23] -rw------- 1 boinc boinc    174080 Nov 19 23:20 result.tar.gz
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc      8624 Nov 19 23:20 runtime_log.err
[2025-11-19 23:20:23] -rw------- 1 boinc boinc       648 Nov 19 23:20 TOBODmdNgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm9QGKDmmuYyEo.diag
[2025-11-19 23:20:23] -rw-r--r-- 1 boinc boinc      7348 Nov 19 23:20 stderr.txt
[2025-11-19 23:20:23] No HITS result produced
[2025-11-19 23:20:23]  *** Contents of shared directory: ***
[2025-11-19 23:20:23] total 400148
[2025-11-19 23:20:23] -rw-r--r-- 2 boinc boinc 408957850 Nov 19 23:15 ATLAS.root_0
[2025-11-19 23:20:23] -rw-r--r-- 2 boinc boinc    590099 Nov 19 23:15 input.tar.gz
[2025-11-19 23:20:23] -rw-r--r-- 2 boinc boinc     15120 Nov 19 23:15 start_atlas.sh
[2025-11-19 23:20:23] -rw------- 1 boinc boinc    174080 Nov 19 23:20 result.tar.gz
23:20:25 (4177417): run_atlas exited; CPU time 31.987175
23:20:25 (4177417): called boinc_finish(0)

</stderr_txt>
]]>

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