Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:53:42 (1337): wrapper (7.7.26015): starting
01:53:42 (1337): wrapper: running run_atlas (--nthreads 8)
[2025-11-23 01:53:42] Arguments: --nthreads 8
[2025-11-23 01:53:42] Threads: 8
[2025-11-23 01:53:42] Checking for CVMFS
[2025-11-23 01:53:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 01:53:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 01:53:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 01:53:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 01:53:45] 2.11.2.0 10419 80249 119084 153191 3 239 15815094 25165825 4249 130560 2 25961136 99.872 13603879 1741 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-23 01:53:45] CVMFS is ok
[2025-11-23 01:53:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 01:53:45] Checking for apptainer binary...
[2025-11-23 01:53:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-23 01:53:45] Running /usr/bin/apptainer --version
[2025-11-23 01:53:45] apptainer version 1.3.2-1.el7
[2025-11-23 01:53:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 01:53:51] cg-vwn422.simple-grid.lan
[2025-11-23 01:53:51] apptainer works
[2025-11-23 01:53:51] Set ATHENA_PROC_NUMBER=8
[2025-11-23 01:53:51] Set ATHENA_CORE_NUMBER=8
[2025-11-23 01:53:51] Starting ATLAS job with PandaID=6891593163
[2025-11-23 01:53:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:47:30]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:47:30] 2025-11-24 02:46:42,251 | INFO     | time since job start (93018s) is within the limit (172800.0s)
[2025-11-24 03:47:30] 2025-11-24 02:46:43,211 | INFO     | monitor loop #6208: job 0:6891593163 is in state 'finished'
[2025-11-24 03:47:30] 2025-11-24 02:46:43,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:47:30] 2025-11-24 02:46:44,258 | INFO     | time since job start (93020s) is within the limit (172800.0s)
[2025-11-24 03:47:30] 2025-11-24 02:46:45,716 | INFO     | monitor loop #6209: job 0:6891593163 is in state 'finished'
[2025-11-24 03:47:30] 2025-11-24 02:46:45,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:47:30] 2025-11-24 02:46:46,266 | INFO     | time since job start (93022s) is within the limit (172800.0s)
[2025-11-24 03:47:30] 2025-11-24 02:46:48,221 | INFO     | monitor loop #6210: job 0:6891593163 is in state 'finished'
[2025-11-24 03:47:30] 2025-11-24 02:46:48,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:47:30] 2025-11-24 02:46:48,274 | INFO     | time since job start (93024s) is within the limit (172800.0s)
[2025-11-24 03:47:30] 2025-11-24 02:46:50,283 | INFO     | time since job start (93026s) is within the limit (172800.0s)
[2025-11-24 03:47:30] 2025-11-24 02:46:50,725 | INFO     | monitor loop #6211: job 0:6891593163 is in state 'finished'
[2025-11-24 03:47:30] 2025-11-24 02:46:50,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:47:30] 2025-11-24 02:46:51,504 | INFO     | PID=5191 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:47:30] 2025-11-24 02:46:51,505 | INFO     | .. there are 9 such processes running
[2025-11-24 03:47:30] 2025-11-24 02:46:52,506 | INFO     | time since job start (93028s) is within the limit (172800.0s)
[2025-11-24 03:47:30] 2025-11-24 02:46:52,700 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:47:30] 2025-11-24 02:46:52,701 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 03:47:30] 2025-11-24 02:46:52,703 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6891593163/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:47:30] 2025-11-24 02:46:52,703 | INFO     | extracted standard info from prmon json
[2025-11-24 03:47:30] 2025-11-24 02:46:52,704 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:47:30] 2025-11-24 02:46:52,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:47:30] 2025-11-24 02:46:52,738 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:47:30] 2025-11-24 02:46:52,741 | INFO     | sum of square deviations: 1095414024238.4794
[2025-11-24 03:47:30] 2025-11-24 02:46:52,818 | INFO     | sum of deviations: 2462159684758.179
[2025-11-24 03:47:30] 2025-11-24 02:46:52,819 | INFO     | mean x: 1763905874.3637557
[2025-11-24 03:47:30] 2025-11-24 02:46:52,819 | INFO     | mean y: 2860766.003282994
[2025-11-24 03:47:30] 2025-11-24 02:46:52,819 | INFO     | intersect: -3961866574.9542027
[2025-11-24 03:47:30] 2025-11-24 02:46:52,821 | INFO     | chi2: 18.174436913994
[2025-11-24 03:47:30] 2025-11-24 02:46:52,823 | INFO     | sum of square deviations: 1084661330511.6505
[2025-11-24 03:47:30] 2025-11-24 02:46:52,889 | INFO     | sum of deviations: 2991199436839.7397
[2025-11-24 03:47:30] 2025-11-24 02:46:52,889 | INFO     | mean x: 1763905721.8682477
[2025-11-24 03:47:30] 2025-11-24 02:46:52,889 | INFO     | mean y: 2868267.1086956523
[2025-11-24 03:47:30] 2025-11-24 02:46:52,890 | INFO     | intersect: -4861501516.777524
[2025-11-24 03:47:30] 2025-11-24 02:46:52,892 | INFO     | chi2: 14.609650929477105
[2025-11-24 03:47:30] 2025-11-24 02:46:52,892 | INFO     | current chi2=14.609650929477105 (change=19.614285721127743 %)
[2025-11-24 03:47:30] 2025-11-24 02:46:52,892 | INFO     | right removable region: 1517
[2025-11-24 03:47:30] 2025-11-24 02:46:52,895 | INFO     | sum of square deviations: 1084660063541.6493
[2025-11-24 03:47:30] 2025-11-24 02:46:52,966 | INFO     | sum of deviations: 1993263719723.2349
[2025-11-24 03:47:30] 2025-11-24 02:46:52,967 | INFO     | mean x: 1763906026.8682477
[2025-11-24 03:47:30] 2025-11-24 02:46:52,967 | INFO     | mean y: 2867412.6811594204
[2025-11-24 03:47:30] 2025-11-24 02:46:52,967 | INFO     | intersect: -3238636544.6761026
[2025-11-24 03:47:30] 2025-11-24 02:46:52,969 | INFO     | chi2: 15.698495119394092
[2025-11-24 03:47:30] 2025-11-24 02:46:52,969 | INFO     | current chi2=15.698495119394092 (change=13.62321048138485 %)
[2025-11-24 03:47:30] 2025-11-24 02:46:52,969 | INFO     | left removable region: 10
[2025-11-24 03:47:30] 2025-11-24 02:46:52,971 | INFO     | sum of square deviations: 1061251628744.9209
[2025-11-24 03:47:30] 2025-11-24 02:46:53,040 | INFO     | sum of deviations: 2508466043288.8896
[2025-11-24 03:47:30] 2025-11-24 02:46:53,041 | INFO     | mean x: 1763905996.3742535
[2025-11-24 03:47:30] 2025-11-24 02:46:53,041 | INFO     | mean y: 2877952.2395487726
[2025-11-24 03:47:30] 2025-11-24 02:46:53,041 | INFO     | intersect: -4166442664.673235
[2025-11-24 03:47:30] 2025-11-24 02:46:53,043 | INFO     | chi2: 11.446638149297218
[2025-11-24 03:47:30] 2025-11-24 02:46:53,043 | INFO     | current memory leak: 2.36 B/s (using 1507 data points, chi2=11.45)
[2025-11-24 03:47:30] 2025-11-24 02:46:53,045 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-24 03:47:30] 2025-11-24 02:46:53,045 | INFO     | ..............................
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . Timing measurements:
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . get job = 0 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . initial setup = 3 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . payload setup = 12 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . stage-in = 0 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . payload execution = 92870 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . stage-out = 7 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | . log creation = 1 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,046 | INFO     | ..............................
[2025-11-24 03:47:30] 2025-11-24 02:46:53,170 | INFO     | 
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | job summary report
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | --------------------------------------------------
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | PanDA job id: 6891593163
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | task id: 47493068
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | errors: (none)
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | pilot state: finished 
[2025-11-24 03:47:30] 2025-11-24 02:46:53,171 | INFO     | transexitcode: 0
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | exeerrorcode: 0
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | exeerrordiag: 
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | exitcode: 0
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | exitmsg: OK
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | cpuconsumptiontime: 342934 s
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | nevents: 1000
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | neventsw: 0
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | pid: 11774
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | pgrp: 11774
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | corecount: 8
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | event service: False
[2025-11-24 03:47:30] 2025-11-24 02:46:53,172 | INFO     | sizes: {0: 2298796, 1: 2298796, 12: 2298824, 14: 2299114, 22: 2299142, 92884: 2363863, 92893: 2372857, 92897: 2372913, 92997: 2373159}
[2025-11-24 03:47:30] 2025-11-24 02:46:53,173 | INFO     | --------------------------------------------------
[2025-11-24 03:47:30] 2025-11-24 02:46:53,173 | INFO     | 
[2025-11-24 03:47:30] 2025-11-24 02:46:53,173 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-24 03:47:30] 2025-11-24 02:46:53,573 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,573 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,573 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,573 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,574 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,575 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,575 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,575 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:47:30] 2025-11-24 02:46:53,575 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,575 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:47:30] 2025-11-24 02:46:53,575 | INFO     | job 6891593163 has completed (purged errors)
[2025-11-24 03:47:30] 2025-11-24 02:46:53,575 | INFO     | overall cleanup function is called
[2025-11-24 03:47:30] 2025-11-24 02:46:54,610 | INFO     | --- collectZombieJob: --- 10, [11774]
[2025-11-24 03:47:30] 2025-11-24 02:46:54,610 | INFO     | zombie collector waiting for pid 11774
[2025-11-24 03:47:30] 2025-11-24 02:46:54,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:47:30] 2025-11-24 02:46:54,611 | INFO     | collected zombie processes
[2025-11-24 03:47:30] 2025-11-24 02:46:54,611 | INFO     | will attempt to kill all subprocesses of pid=11774
[2025-11-24 03:47:30] 2025-11-24 02:46:54,743 | INFO     | process IDs to be killed: [11774] (in reverse order)
[2025-11-24 03:47:30] 2025-11-24 02:46:56,048 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:47:30] 2025-11-24 02:46:56,048 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:47:30] 2025-11-24 02:46:56,052 | INFO     | did not find any defunct processes belonging to 11774
[2025-11-24 03:47:30] 2025-11-24 02:46:56,056 | INFO     | did not find any defunct processes belonging to 11774
[2025-11-24 03:47:30] 2025-11-24 02:46:56,125 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:47:30] 2025-11-24 02:46:56,126 | INFO     | ready for new job
[2025-11-24 03:47:30] 2025-11-24 02:46:56,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:47:30] 2025-11-24 02:46:56,133 | INFO     | ***************************************
[2025-11-24 03:47:30] 2025-11-24 02:46:56,134 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:47:30] 2025-11-24 02:46:56,134 | INFO     | ***************************************
[2025-11-24 03:47:30] 2025-11-24 02:46:56,134 | INFO     | 
[2025-11-24 03:47:30] 2025-11-24 02:46:56,135 | INFO     | pilot is running in a VM
[2025-11-24 03:47:30] 2025-11-24 02:46:56,135 | INFO     | architecture information:
[2025-11-24 03:47:30] 2025-11-24 02:46:56,155 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:47:30] 2025-11-24 02:46:56,458 | INFO     | cat /etc/os-release:
[2025-11-24 03:47:30] NAME="CentOS Linux"
[2025-11-24 03:47:30] VERSION="7 (Core)"
[2025-11-24 03:47:30] ID="centos"
[2025-11-24 03:47:30] ID_LIKE="rhel fedora"
[2025-11-24 03:47:30] VERSION_ID="7"
[2025-11-24 03:47:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:47:30] ANSI_COLOR="0;31"
[2025-11-24 03:47:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:47:30] HOME_URL="https://www.centos.org/"
[2025-11-24 03:47:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:47:30] 
[2025-11-24 03:47:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:47:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:47:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:47:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:47:30] 
[2025-11-24 03:47:30] 2025-11-24 02:46:56,458 | INFO     | ***************************************
[2025-11-24 03:47:30] 2025-11-24 02:46:56,966 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-24 03:47:30] 2025-11-24 02:46:57,211 | INFO     | sufficient remaining disk space (494791557120 B)
[2025-11-24 03:47:30] 2025-11-24 02:46:57,211 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:47:30] 2025-11-24 02:46:57,211 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:47:30] 2025-11-24 02:46:57,211 | INFO     | update_server=False
[2025-11-24 03:47:30] 2025-11-24 02:46:57,211 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:47:30] 2025-11-24 02:46:57,216 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:47:30] 2025-11-24 02:46:57,224 | INFO     | aborting loop
[2025-11-24 03:47:30] 2025-11-24 02:46:57,759 | INFO     | all data control threads have been joined
[2025-11-24 03:47:30] 2025-11-24 02:46:58,076 | INFO     | all payload control threads have been joined
[2025-11-24 03:47:30] 2025-11-24 02:46:58,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:47:30] 2025-11-24 02:46:58,223 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:58,230 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:58,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:47:30] 2025-11-24 02:46:58,477 | INFO     | [job] validate thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:58,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:47:30] 2025-11-24 02:46:58,577 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:58,592 | INFO     | all job control threads have been joined
[2025-11-24 03:47:30] 2025-11-24 02:46:58,738 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:58,765 | INFO     | [data] control thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,052 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,082 | INFO     | [payload] control thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,185 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,192 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,224 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,306 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,598 | INFO     | [job] control thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:46:59,698 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:47:00,304 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:47:02,491 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:47:30] 2025-11-24 02:47:05,832 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:47:30] 2025-11-24 02:47:06,052 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931706865472)>', '<ExcThread(monitor, started 139931284391680)>']
[2025-11-24 03:47:30] 2025-11-24 02:47:11,078 | INFO     | all workflow threads have been joined
[2025-11-24 03:47:30] 2025-11-24 02:47:11,078 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:47:30] 2025-11-24 02:47:11,079 | INFO     | traces error code: 0
[2025-11-24 03:47:30] 2025-11-24 02:47:11,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:47:30] 2025-11-24 02:47:25,715 | INFO     | PID=5191 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-24 03:47:30] 2025-11-24 02:47:25,715 | INFO     | .. there are 9 such processes running
[2025-11-24 03:47:30] 2025-11-24 02:47:25,716 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:47:30] 2025-11-24 02:47:25,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:47:30] 2025-11-24 02:47:25,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:47:30] 2025-11-24 02:47:25,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:47:30] 2025-11-24 02:47:25,716 | INFO     | [monitor] control thread has ended
[2025-11-24 03:47:30] 2025-11-24 02:47:26,281 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:47:30] 2025-11-24 02:47:26,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:47:30] 2025-11-24 02:47:26,457 [wrapper] pilotpid: 5191
[2025-11-24 03:47:30] 2025-11-24 02:47:26,519 [wrapper] Pilot exit status: 0
[2025-11-24 03:47:30] 2025-11-24 02:47:26,959 [wrapper] pandaids: 6891593163
[2025-11-24 03:47:30] 2025-11-24 02:47:27,728 [wrapper] cleanup supervisor_pilot 12126 5192
[2025-11-24 03:47:30] 2025-11-24 02:47:27,781 [wrapper] Test setup, not cleaning
[2025-11-24 03:47:30] 2025-11-24 02:47:27,864 [wrapper] apfmon messages muted
[2025-11-24 03:47:30] 2025-11-24 02:47:27,932 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:47:30] 2025-11-24 02:47:28,019 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:47:30]  *** Error codes and diagnostics ***
[2025-11-24 03:47:30]     "exeErrorCode": 0,
[2025-11-24 03:47:30]     "exeErrorDiag": "",
[2025-11-24 03:47:30]     "pilotErrorCode": 0,
[2025-11-24 03:47:30]     "pilotErrorDiag": "",
[2025-11-24 03:47:30]  *** Listing of results directory ***
[2025-11-24 03:47:30] total 1346636
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc      5112 Nov 18 19:37 queuedata.json
[2025-11-24 03:47:30] -rwx------. 1 boinc boinc     36292 Nov 18 19:38 runpilot2-wrapper.sh
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc       100 Nov 23 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:47:30] -rwxr-xr-x. 1 boinc boinc      7986 Nov 23 01:53 run_atlas
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc       105 Nov 23 01:53 job.xml
[2025-11-24 03:47:30] -rw-r--r--. 2 boinc boinc 411673617 Nov 23 01:53 EVNT.47493065._000752.pool.root.1
[2025-11-24 03:47:30] -rw-r--r--. 2 boinc boinc    590100 Nov 23 01:53 input.tar.gz
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc      6391 Nov 23 01:53 init_data.xml
[2025-11-24 03:47:30] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:53 start_atlas.sh
[2025-11-24 03:47:30] drwxrwx--x. 2 boinc boinc        68 Nov 23 01:53 shared
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc         0 Nov 23 01:53 boinc_lockfile
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc      2773 Nov 23 01:53 pandaJob.out
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc    989784 Nov 23 01:56 agis_schedconf.cvmfs.json
[2025-11-24 03:47:30] drwx------. 5 boinc boinc      4096 Nov 23 01:56 pilot3
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc       533 Nov 24 03:19 boinc_task_state.xml
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc 933530225 Nov 24 03:43 HITS.47493068._006163.pool.root.1
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc      1030 Nov 24 03:44 memory_monitor_summary.json
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc   1526164 Nov 24 03:45 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc   2569815 Nov 24 03:45 log.47493068._006163.job.log.tgz.1
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc        95 Nov 24 03:46 pilot_heartbeat.json
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc      8625 Nov 24 03:46 heartbeat.json
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc       819 Nov 24 03:47 pilotlog.txt
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc  12354816 Nov 24 03:47 log.47493068._006163.job.log.1
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc       353 Nov 24 03:47 output.list
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc       620 Nov 24 03:47 runtime_log
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc  14940160 Nov 24 03:47 result.tar.gz
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc      8703 Nov 24 03:47 runtime_log.err
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc       662 Nov 24 03:47 BLOMDm3lff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmHGKDmsmznqm.diag
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc        29 Nov 24 03:47 wrapper_checkpoint.txt
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc      8192 Nov 24 03:47 boinc_mmap_file
[2025-11-24 03:47:30] -rw-r--r--. 1 boinc boinc     21476 Nov 24 03:47 stderr.txt
[2025-11-24 03:47:30] HITS file was successfully produced:
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc 933530225 Nov 24 03:43 shared/HITS.pool.root.1
[2025-11-24 03:47:30]  *** Contents of shared directory: ***
[2025-11-24 03:47:30] total 1328868
[2025-11-24 03:47:30] -rw-r--r--. 2 boinc boinc 411673617 Nov 23 01:53 ATLAS.root_0
[2025-11-24 03:47:30] -rw-r--r--. 2 boinc boinc    590100 Nov 23 01:53 input.tar.gz
[2025-11-24 03:47:30] -rw-r--r--. 2 boinc boinc     15120 Nov 23 01:53 start_atlas.sh
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc 933530225 Nov 24 03:43 HITS.pool.root.1
[2025-11-24 03:47:30] -rw-------. 1 boinc boinc  14940160 Nov 24 03:47 result.tar.gz
03:47:32 (1337): run_atlas exited; CPU time 343465.175476
03:47:32 (1337): called boinc_finish(0)

</stderr_txt>
]]>

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