Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:24:59 (4975): wrapper (7.7.26015): starting
20:24:59 (4975): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 20:24:59] Arguments: --nthreads 8
[2025-11-22 20:24:59] Threads: 8
[2025-11-22 20:24:59] Checking for CVMFS
[2025-11-22 20:25:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 20:25:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 20:25:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 20:25:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 20:25:01] 2.11.2.0 24996 279887 141316 153183 2 127 24313295 25165824 3288 130560 3 134879267 99.890 71352095 2988 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 20:25:01] CVMFS is ok
[2025-11-22 20:25:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 20:25:02] Checking for apptainer binary...
[2025-11-22 20:25:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 20:25:02] Running /usr/bin/apptainer --version
[2025-11-22 20:25:02] apptainer version 1.3.2-1.el7
[2025-11-22 20:25:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 20:25:05] cg-vwn259.simple-grid.lan
[2025-11-22 20:25:05] apptainer works
[2025-11-22 20:25:05] Set ATHENA_PROC_NUMBER=8
[2025-11-22 20:25:05] Set ATHENA_CORE_NUMBER=8
[2025-11-22 20:25:05] Starting ATLAS job with PandaID=6892537132
[2025-11-22 20:25:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 21:55:44]  *** The last 200 lines of the pilot log: ***
[2025-11-23 21:55:44] 2025-11-23 20:54:48,219 | INFO     | mean x: 1763885652.367224
[2025-11-23 21:55:44] 2025-11-23 20:54:48,219 | INFO     | mean y: 2870401.6508361204
[2025-11-23 21:55:44] 2025-11-23 20:54:48,220 | INFO     | intersect: -7277631921.605863
[2025-11-23 21:55:44] 2025-11-23 20:54:48,222 | INFO     | chi2: 10.107114951538486
[2025-11-23 21:55:44] 2025-11-23 20:54:48,224 | INFO     | sum of square deviations: 1025738479176.5159
[2025-11-23 21:55:44] 2025-11-23 20:54:48,312 | INFO     | sum of deviations: 4793530077133.632
[2025-11-23 21:55:44] 2025-11-23 20:54:48,312 | INFO     | mean x: 1763885499.871812
[2025-11-23 21:55:44] 2025-11-23 20:54:48,312 | INFO     | mean y: 2878011.134228188
[2025-11-23 21:55:44] 2025-11-23 20:54:48,313 | INFO     | intersect: -8240195996.427098
[2025-11-23 21:55:44] 2025-11-23 20:54:48,315 | INFO     | chi2: 6.812373080793995
[2025-11-23 21:55:44] 2025-11-23 20:54:48,315 | INFO     | current chi2=6.812373080793995 (change=32.59824278779943 %)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,317 | INFO     | sum of square deviations: 1015447386420.3271
[2025-11-23 21:55:44] 2025-11-23 20:54:48,394 | INFO     | sum of deviations: 4980981472738.83
[2025-11-23 21:55:44] 2025-11-23 20:54:48,394 | INFO     | mean x: 1763885347.3757577
[2025-11-23 21:55:44] 2025-11-23 20:54:48,394 | INFO     | mean y: 2880787.373063973
[2025-11-23 21:55:44] 2025-11-23 20:54:48,395 | INFO     | intersect: -8649345170.178791
[2025-11-23 21:55:44] 2025-11-23 20:54:48,397 | INFO     | chi2: 6.22637012849629
[2025-11-23 21:55:44] 2025-11-23 20:54:48,397 | INFO     | current chi2=6.22637012849629 (change=8.602038457785179 %)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,397 | INFO     | right removable region: 1484
[2025-11-23 21:55:44] 2025-11-23 20:54:48,399 | INFO     | sum of square deviations: 1025737232336.5161
[2025-11-23 21:55:44] 2025-11-23 20:54:48,467 | INFO     | sum of deviations: 3708950776625.3804
[2025-11-23 21:55:44] 2025-11-23 20:54:48,467 | INFO     | mean x: 1763885804.871812
[2025-11-23 21:55:44] 2025-11-23 20:54:48,467 | INFO     | mean y: 2878753.2637583893
[2025-11-23 21:55:44] 2025-11-23 20:54:48,467 | INFO     | intersect: -6375134464.561494
[2025-11-23 21:55:44] 2025-11-23 20:54:48,469 | INFO     | chi2: 6.291246288551149
[2025-11-23 21:55:44] 2025-11-23 20:54:48,470 | INFO     | current chi2=6.291246288551149 (change=37.75428182308833 %)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,472 | INFO     | sum of square deviations: 1015444983384.5751
[2025-11-23 21:55:44] 2025-11-23 20:54:48,539 | INFO     | sum of deviations: 3297542017238.136
[2025-11-23 21:55:44] 2025-11-23 20:54:48,540 | INFO     | mean x: 1763885957.376431
[2025-11-23 21:55:44] 2025-11-23 20:54:48,540 | INFO     | mean y: 2884846.701010101
[2025-11-23 21:55:44] 2025-11-23 20:54:48,540 | INFO     | intersect: -5725134054.606855
[2025-11-23 21:55:44] 2025-11-23 20:54:48,542 | INFO     | chi2: 4.353110835467023
[2025-11-23 21:55:44] 2025-11-23 20:54:48,542 | INFO     | current chi2=4.353110835467023 (change=30.806860265686275 %)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,545 | INFO     | sum of square deviations: 1005222439720.3727
[2025-11-23 21:55:44] 2025-11-23 20:54:48,614 | INFO     | sum of deviations: 3189315347572.847
[2025-11-23 21:55:44] 2025-11-23 20:54:48,614 | INFO     | mean x: 1763886109.8763514
[2025-11-23 21:55:44] 2025-11-23 20:54:48,615 | INFO     | mean y: 2886461.0756756756
[2025-11-23 21:55:44] 2025-11-23 20:54:48,615 | INFO     | intersect: -5593475915.359244
[2025-11-23 21:55:44] 2025-11-23 20:54:48,617 | INFO     | chi2: 4.285706305727867
[2025-11-23 21:55:44] 2025-11-23 20:54:48,617 | INFO     | current chi2=4.285706305727867 (change=1.548422089094912 %)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,617 | INFO     | left removable region: 30
[2025-11-23 21:55:44] 2025-11-23 20:54:48,619 | INFO     | sum of square deviations: 953170701077.0477
[2025-11-23 21:55:44] 2025-11-23 20:54:48,681 | INFO     | sum of deviations: 3704595345465.747
[2025-11-23 21:55:44] 2025-11-23 20:54:48,681 | INFO     | mean x: 1763886231.885832
[2025-11-23 21:55:44] 2025-11-23 20:54:48,681 | INFO     | mean y: 2900539.1430536453
[2025-11-23 21:55:44] 2025-11-23 20:54:48,681 | INFO     | intersect: -6852623573.370729
[2025-11-23 21:55:44] 2025-11-23 20:54:48,683 | INFO     | chi2: 0.2811430843722281
[2025-11-23 21:55:44] 2025-11-23 20:54:48,684 | INFO     | current memory leak: 3.89 B/s (using 1454 data points, chi2=0.28)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,686 | INFO     | could have reported an average CPU frequency of 1999 MHz (51 samples)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,686 | INFO     | ..............................
[2025-11-23 21:55:44] 2025-11-23 20:54:48,686 | INFO     | . Timing measurements:
[2025-11-23 21:55:44] 2025-11-23 20:54:48,686 | INFO     | . get job = 0 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,686 | INFO     | . initial setup = 8 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,687 | INFO     | . payload setup = 113 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,687 | INFO     | . stage-in = 0 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,687 | INFO     | . payload execution = 91313 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,687 | INFO     | . stage-out = 3 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,687 | INFO     | . log creation = 1 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,687 | INFO     | ..............................
[2025-11-23 21:55:44] 2025-11-23 20:54:48,815 | INFO     | 
[2025-11-23 21:55:44] 2025-11-23 20:54:48,815 | INFO     | job summary report
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | --------------------------------------------------
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | PanDA job id: 6892537132
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | task id: 47493029
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | errors: (none)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | pilot state: finished 
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | transexitcode: 0
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | exeerrorcode: 0
[2025-11-23 21:55:44] 2025-11-23 20:54:48,816 | INFO     | exeerrordiag: 
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | exitcode: 0
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | exitmsg: OK
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | cpuconsumptiontime: 338297 s
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | nevents: 1000
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | neventsw: 0
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | pid: 15683
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | pgrp: 15683
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | corecount: 8
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | event service: False
[2025-11-23 21:55:44] 2025-11-23 20:54:48,817 | INFO     | sizes: {0: 2298626, 1: 2298825, 2: 2298853, 13: 2298853, 23: 2298909, 34: 2298937, 45: 2299093, 56: 2299121, 66: 2299149, 67: 2299439, 77: 2299467, 91430: 2363841,
[2025-11-23 21:55:44] 2025-11-23 20:54:48,818 | INFO     | --------------------------------------------------
[2025-11-23 21:55:44] 2025-11-23 20:54:48,818 | INFO     | 
[2025-11-23 21:55:44] 2025-11-23 20:54:48,818 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2025-11-23 21:55:44] 2025-11-23 20:54:48,863 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,863 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,863 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,864 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 21:55:44] 2025-11-23 20:54:48,865 | INFO     | job 6892537132 has completed (purged errors)
[2025-11-23 21:55:44] 2025-11-23 20:54:48,866 | INFO     | overall cleanup function is called
[2025-11-23 21:55:44] 2025-11-23 20:54:49,204 | INFO     | PID=8894 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 21:55:44] 2025-11-23 20:54:49,204 | INFO     | .. there are 9 such processes running
[2025-11-23 21:55:44] 2025-11-23 20:54:49,883 | INFO     | --- collectZombieJob: --- 10, [15683]
[2025-11-23 21:55:44] 2025-11-23 20:54:49,884 | INFO     | zombie collector waiting for pid 15683
[2025-11-23 21:55:44] 2025-11-23 20:54:49,884 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 21:55:44] 2025-11-23 20:54:49,884 | INFO     | collected zombie processes
[2025-11-23 21:55:44] 2025-11-23 20:54:49,884 | INFO     | will attempt to kill all subprocesses of pid=15683
[2025-11-23 21:55:44] 2025-11-23 20:54:49,986 | INFO     | process IDs to be killed: [15683] (in reverse order)
[2025-11-23 21:55:44] 2025-11-23 20:54:50,052 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 21:55:44] 2025-11-23 20:54:50,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 21:55:44] 2025-11-23 20:54:50,057 | INFO     | did not find any defunct processes belonging to 15683
[2025-11-23 21:55:44] 2025-11-23 20:54:50,061 | INFO     | did not find any defunct processes belonging to 15683
[2025-11-23 21:55:44] 2025-11-23 20:54:50,062 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 21:55:44] 2025-11-23 20:54:50,063 | INFO     | ready for new job
[2025-11-23 21:55:44] 2025-11-23 20:54:50,063 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 21:55:44] 2025-11-23 20:54:50,071 | INFO     | ***************************************
[2025-11-23 21:55:44] 2025-11-23 20:54:50,071 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 21:55:44] 2025-11-23 20:54:50,071 | INFO     | ***************************************
[2025-11-23 21:55:44] 2025-11-23 20:54:50,071 | INFO     | 
[2025-11-23 21:55:44] 2025-11-23 20:54:50,072 | INFO     | pilot is running in a VM
[2025-11-23 21:55:44] 2025-11-23 20:54:50,072 | INFO     | architecture information:
[2025-11-23 21:55:44] 2025-11-23 20:54:50,073 | INFO     | executing command: cat /etc/os-release
[2025-11-23 21:55:44] 2025-11-23 20:54:50,094 | INFO     | cat /etc/os-release:
[2025-11-23 21:55:44] NAME="CentOS Linux"
[2025-11-23 21:55:44] VERSION="7 (Core)"
[2025-11-23 21:55:44] ID="centos"
[2025-11-23 21:55:44] ID_LIKE="rhel fedora"
[2025-11-23 21:55:44] VERSION_ID="7"
[2025-11-23 21:55:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 21:55:44] ANSI_COLOR="0;31"
[2025-11-23 21:55:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 21:55:44] HOME_URL="https://www.centos.org/"
[2025-11-23 21:55:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 21:55:44] 
[2025-11-23 21:55:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 21:55:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 21:55:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 21:55:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 21:55:44] 
[2025-11-23 21:55:44] 2025-11-23 20:54:50,095 | INFO     | ***************************************
[2025-11-23 21:55:44] 2025-11-23 20:54:50,598 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2025-11-23 21:55:44] 2025-11-23 20:54:50,641 | INFO     | sufficient remaining disk space (495149121536 B)
[2025-11-23 21:55:44] 2025-11-23 20:54:50,642 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 21:55:44] 2025-11-23 20:54:50,642 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 21:55:44] 2025-11-23 20:54:50,642 | INFO     | update_server=False
[2025-11-23 21:55:44] 2025-11-23 20:54:50,642 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 21:55:44] 2025-11-23 20:54:50,642 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:55:44] 2025-11-23 20:54:50,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 21:55:44] 2025-11-23 20:54:50,688 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 21:55:44] 2025-11-23 20:54:50,688 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 21:55:44] 2025-11-23 20:54:50,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 21:55:44] 2025-11-23 20:54:50,688 | INFO     | will abort loop
[2025-11-23 21:55:44] 2025-11-23 20:54:50,961 | INFO     | all data control threads have been joined
[2025-11-23 21:55:44] 2025-11-23 20:54:51,603 | INFO     | all payload control threads have been joined
[2025-11-23 21:55:44] 2025-11-23 20:54:51,647 | INFO     | [job] retrieve thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:51,648 | INFO     | [job] queue monitor thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:51,693 | INFO     | [job] job monitor thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:51,711 | INFO     | [payload] validate_post thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:51,796 | INFO     | [data] copytool_in thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:51,854 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:51,917 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:51,967 | INFO     | [data] control thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:52,187 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:52,321 | INFO     | all job control threads have been joined
[2025-11-23 21:55:44] 2025-11-23 20:54:52,366 | INFO     | [job] validate thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:52,419 | INFO     | [payload] failed_post thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:52,609 | INFO     | [payload] control thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:52,650 | INFO     | [data] copytool_out thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:52,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 21:55:44] 2025-11-23 20:54:52,767 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:53,327 | INFO     | [job] control thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:54:56,771 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 21:55:44] 2025-11-23 20:55:21,367 | INFO     | PID=8894 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 21:55:44] 2025-11-23 20:55:21,367 | INFO     | .. there are 9 such processes running
[2025-11-23 21:55:44] 2025-11-23 20:55:21,367 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 21:55:44] 2025-11-23 20:55:21,368 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 21:55:44] 2025-11-23 20:55:21,368 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 21:55:44] 2025-11-23 20:55:33,666 | INFO     | [monitor] cgroup control has ended
[2025-11-23 21:55:44] 2025-11-23 20:55:34,672 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495379642176)>', '<ExcThread(monitor, started 140494923347712)>']
[2025-11-23 21:55:44] 2025-11-23 20:55:35,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 21:55:44] 2025-11-23 20:55:35,448 | INFO     | [monitor] control thread has ended
[2025-11-23 21:55:44] 2025-11-23 20:55:39,698 | INFO     | all workflow threads have been joined
[2025-11-23 21:55:44] 2025-11-23 20:55:39,698 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 21:55:44] 2025-11-23 20:55:39,699 | INFO     | traces error code: 0
[2025-11-23 21:55:44] 2025-11-23 20:55:39,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 21:55:44] 2025-11-23 20:55:39,989 [wrapper] ==== pilot stdout END ====
[2025-11-23 21:55:44] 2025-11-23 20:55:40,011 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 21:55:44] 2025-11-23 20:55:40,020 [wrapper] pilotpid: 8894
[2025-11-23 21:55:44] 2025-11-23 20:55:40,142 [wrapper] Pilot exit status: 0
[2025-11-23 21:55:44] 2025-11-23 20:55:40,590 [wrapper] pandaids: 6892537132
[2025-11-23 21:55:44] 2025-11-23 20:55:41,760 [wrapper] cleanup supervisor_pilot 14423 8895
[2025-11-23 21:55:44] 2025-11-23 20:55:41,828 [wrapper] Test setup, not cleaning
[2025-11-23 21:55:44] 2025-11-23 20:55:41,896 [wrapper] apfmon messages muted
[2025-11-23 21:55:44] 2025-11-23 20:55:42,013 [wrapper] ==== wrapper stdout END ====
[2025-11-23 21:55:44] 2025-11-23 20:55:42,123 [wrapper] ==== wrapper stderr END ====
[2025-11-23 21:55:44]  *** Error codes and diagnostics ***
[2025-11-23 21:55:44]     "exeErrorCode": 0,
[2025-11-23 21:55:44]     "exeErrorDiag": "",
[2025-11-23 21:55:44]     "pilotErrorCode": 0,
[2025-11-23 21:55:44]     "pilotErrorDiag": "",
[2025-11-23 21:55:44]  *** Listing of results directory ***
[2025-11-23 21:55:44] total 1334860
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc    598293 Nov  6 09:41 pilot3.tar.gz
[2025-11-23 21:55:44] -rwx------. 1 boinc boinc     36292 Nov 19 08:30 runpilot2-wrapper.sh
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:30 queuedata.json
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc       100 Nov 22 20:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 21:55:44] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 20:24 run_atlas
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc       105 Nov 22 20:24 job.xml
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc      6392 Nov 22 20:24 init_data.xml
[2025-11-23 21:55:44] -rw-r--r--. 2 boinc boinc 409920514 Nov 22 20:24 EVNT.47493027._000208.pool.root.1
[2025-11-23 21:55:44] drwxrwx--x. 2 boinc boinc        68 Nov 22 20:24 shared
[2025-11-23 21:55:44] -rw-r--r--. 2 boinc boinc    611272 Nov 22 20:24 input.tar.gz
[2025-11-23 21:55:44] -rw-r--r--. 2 boinc boinc     15120 Nov 22 20:24 start_atlas.sh
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc         0 Nov 22 20:24 boinc_lockfile
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc      2773 Nov 22 20:25 pandaJob.out
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc    989768 Nov 22 20:27 agis_schedconf.cvmfs.json
[2025-11-23 21:55:44] drwx------. 7 boinc boinc      4096 Nov 22 20:27 pilot3
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc       533 Nov 23 21:39 boinc_task_state.xml
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc 923482700 Nov 23 21:53 HITS.47493029._002040.pool.root.1
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc      1030 Nov 23 21:54 memory_monitor_summary.json
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc   1526164 Nov 23 21:54 agis_ddmendpoints.agis.ALL.json
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc   2561759 Nov 23 21:54 log.47493029._002040.job.log.tgz.1
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc        95 Nov 23 21:54 pilot_heartbeat.json
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc      8626 Nov 23 21:54 heartbeat.json
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc        29 Nov 23 21:55 wrapper_checkpoint.txt
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc      8192 Nov 23 21:55 boinc_mmap_file
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc      5070 Nov 23 21:55 pilotlog.txt
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc  12208052 Nov 23 21:55 log.47493029._002040.job.log.1
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc       353 Nov 23 21:55 output.list
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc       620 Nov 23 21:55 runtime_log
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc  14786560 Nov 23 21:55 result.tar.gz
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc      8717 Nov 23 21:55 runtime_log.err
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc       662 Nov 23 21:55 oIjNDmAprf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrrGKDmMkpgcn.diag
[2025-11-23 21:55:44] -rw-r--r--. 1 boinc boinc     20984 Nov 23 21:55 stderr.txt
[2025-11-23 21:55:44] HITS file was successfully produced:
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc 923482700 Nov 23 21:53 shared/HITS.pool.root.1
[2025-11-23 21:55:44]  *** Contents of shared directory: ***
[2025-11-23 21:55:44] total 1317212
[2025-11-23 21:55:44] -rw-r--r--. 2 boinc boinc 409920514 Nov 22 20:24 ATLAS.root_0
[2025-11-23 21:55:44] -rw-r--r--. 2 boinc boinc    611272 Nov 22 20:24 input.tar.gz
[2025-11-23 21:55:44] -rw-r--r--. 2 boinc boinc     15120 Nov 22 20:24 start_atlas.sh
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc 923482700 Nov 23 21:53 HITS.pool.root.1
[2025-11-23 21:55:44] -rw-------. 1 boinc boinc  14786560 Nov 23 21:55 result.tar.gz
21:55:46 (4975): run_atlas exited; CPU time 338809.612823
21:55:46 (4975): called boinc_finish(0)

</stderr_txt>
]]>

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