Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:56:44 (32461): wrapper (7.7.26015): starting
21:56:44 (32461): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 21:56:44] Arguments: --nthreads 8
[2025-11-22 21:56:44] Threads: 8
[2025-11-22 21:56:44] Checking for CVMFS
[2025-11-22 21:56:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 21:56:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 21:56:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 21:56:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 21:56:47] 2.11.2.0 17816 185100 136612 153184 2 85 15119605 25165825 4632 130560 3 64715018 99.880 31899438 2805 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 21:56:47] CVMFS is ok
[2025-11-22 21:56:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 21:56:47] Checking for apptainer binary...
[2025-11-22 21:56:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 21:56:47] Running /usr/bin/apptainer --version
[2025-11-22 21:56:47] apptainer version 1.3.2-1.el7
[2025-11-22 21:56:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 21:57:19] cg-vwn410.simple-grid.lan
[2025-11-22 21:57:19] apptainer works
[2025-11-22 21:57:19] Set ATHENA_PROC_NUMBER=8
[2025-11-22 21:57:19] Set ATHENA_CORE_NUMBER=8
[2025-11-22 21:57:19] Starting ATLAS job with PandaID=6891070878
[2025-11-22 21:57:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:03:56]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:03:56] 2025-11-23 22:02:40,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:03:56] 2025-11-23 22:02:40,937 | INFO     | time since job start (90093s) is within the limit (172800.0s)
[2025-11-23 23:03:56] 2025-11-23 22:02:42,938 | INFO     | monitor loop #6053: job 0:6891070878 is in state 'finished'
[2025-11-23 23:03:56] 2025-11-23 22:02:42,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:03:56] 2025-11-23 22:02:42,947 | INFO     | time since job start (90095s) is within the limit (172800.0s)
[2025-11-23 23:03:56] 2025-11-23 22:02:44,954 | INFO     | time since job start (90097s) is within the limit (172800.0s)
[2025-11-23 23:03:56] 2025-11-23 22:02:45,443 | INFO     | monitor loop #6054: job 0:6891070878 is in state 'finished'
[2025-11-23 23:03:56] 2025-11-23 22:02:45,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:03:56] 2025-11-23 22:02:46,960 | INFO     | time since job start (90099s) is within the limit (172800.0s)
[2025-11-23 23:03:56] 2025-11-23 22:02:47,957 | INFO     | monitor loop #6055: job 0:6891070878 is in state 'finished'
[2025-11-23 23:03:56] 2025-11-23 22:02:47,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:03:56] 2025-11-23 22:02:48,967 | INFO     | time since job start (90101s) is within the limit (172800.0s)
[2025-11-23 23:03:56] 2025-11-23 22:02:50,462 | INFO     | monitor loop #6056: job 0:6891070878 is in state 'finished'
[2025-11-23 23:03:56] 2025-11-23 22:02:50,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:03:56] 2025-11-23 22:02:50,974 | INFO     | time since job start (90103s) is within the limit (172800.0s)
[2025-11-23 23:03:56] 2025-11-23 22:02:50,975 | INFO     | 90113s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-23 23:03:56] 2025-11-23 22:02:51,522 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 23:03:56] 2025-11-23 22:02:51,524 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 23:03:56] 2025-11-23 22:02:51,525 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6891070878/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 23:03:56] 2025-11-23 22:02:51,526 | INFO     | extracted standard info from prmon json
[2025-11-23 23:03:56] 2025-11-23 22:02:51,526 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 23:03:56] 2025-11-23 22:02:51,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 23:03:56] 2025-11-23 22:02:51,573 | INFO     | fitting pss+swap vs Time
[2025-11-23 23:03:56] 2025-11-23 22:02:51,575 | INFO     | sum of square deviations: 978968747143.1171
[2025-11-23 23:03:56] 2025-11-23 22:02:51,685 | INFO     | sum of deviations: 3648789115554.98
[2025-11-23 23:03:56] 2025-11-23 22:02:51,685 | INFO     | mean x: 1763890505.3087935
[2025-11-23 23:03:56] 2025-11-23 22:02:51,685 | INFO     | mean y: 2827150.8698023176
[2025-11-23 23:03:56] 2025-11-23 22:02:51,686 | INFO     | intersect: -6571503741.289516
[2025-11-23 23:03:56] 2025-11-23 22:02:51,688 | INFO     | chi2: 26.43102350389285
[2025-11-23 23:03:56] 2025-11-23 22:02:51,690 | INFO     | sum of square deviations: 968993508482.0225
[2025-11-23 23:03:56] 2025-11-23 22:02:51,798 | INFO     | sum of deviations: 4121310593986.6
[2025-11-23 23:03:56] 2025-11-23 22:02:51,798 | INFO     | mean x: 1763890352.8132694
[2025-11-23 23:03:56] 2025-11-23 22:02:51,798 | INFO     | mean y: 2834373.5150478794
[2025-11-23 23:03:56] 2025-11-23 22:02:51,799 | INFO     | intersect: -7499321145.636151
[2025-11-23 23:03:56] 2025-11-23 22:02:51,800 | INFO     | chi2: 23.34558083183626
[2025-11-23 23:03:56] 2025-11-23 22:02:51,801 | INFO     | current chi2=23.34558083183626 (change=11.673564860634913 %)
[2025-11-23 23:03:56] 2025-11-23 22:02:51,801 | INFO     | right removable region: 1461
[2025-11-23 23:03:56] 2025-11-23 22:02:51,803 | INFO     | sum of square deviations: 968992337282.022
[2025-11-23 23:03:56] 2025-11-23 22:02:51,900 | INFO     | sum of deviations: 3026167383384.322
[2025-11-23 23:03:56] 2025-11-23 22:02:51,901 | INFO     | mean x: 1763890657.8132694
[2025-11-23 23:03:56] 2025-11-23 22:02:51,901 | INFO     | mean y: 2836668.2722298224
[2025-11-23 23:03:56] 2025-11-23 22:02:51,901 | INFO     | intersect: -5505801709.099452
[2025-11-23 23:03:56] 2025-11-23 22:02:51,903 | INFO     | chi2: 21.519146950771745
[2025-11-23 23:03:56] 2025-11-23 22:02:51,903 | INFO     | current chi2=21.519146950771745 (change=18.58375462606534 %)
[2025-11-23 23:03:56] 2025-11-23 22:02:51,903 | INFO     | left removable region: 10
[2025-11-23 23:03:56] 2025-11-23 22:02:51,913 | INFO     | sum of square deviations: 947284678067.4069
[2025-11-23 23:03:56] 2025-11-23 22:02:51,983 | INFO     | sum of deviations: 3061655386638.6714
[2025-11-23 23:03:56] 2025-11-23 22:02:51,984 | INFO     | mean x: 1763890627.3232253
[2025-11-23 23:03:56] 2025-11-23 22:02:51,984 | INFO     | mean y: 2853945.977257064
[2025-11-23 23:03:56] 2025-11-23 22:02:51,984 | INFO     | intersect: -5698098856.936478
[2025-11-23 23:03:56] 2025-11-23 22:02:51,986 | INFO     | chi2: 14.057967199960778
[2025-11-23 23:03:56] 2025-11-23 22:02:51,986 | INFO     | current memory leak: 3.23 B/s (using 1451 data points, chi2=14.06)
[2025-11-23 23:03:56] 2025-11-23 22:02:51,988 | INFO     | could have reported an average CPU frequency of 1999 MHz (49 samples)
[2025-11-23 23:03:56] 2025-11-23 22:02:51,988 | INFO     | ..............................
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . Timing measurements:
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . get job = 0 s
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . initial setup = 10 s
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . payload setup = 177 s
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . stage-in = 0 s
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . payload execution = 89623 s
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . stage-out = 5 s
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | . log creation = 2 s
[2025-11-23 23:03:56] 2025-11-23 22:02:51,989 | INFO     | ..............................
[2025-11-23 23:03:56] 2025-11-23 22:02:52,112 | INFO     | 
[2025-11-23 23:03:56] 2025-11-23 22:02:52,112 | INFO     | job summary report
[2025-11-23 23:03:56] 2025-11-23 22:02:52,112 | INFO     | --------------------------------------------------
[2025-11-23 23:03:56] 2025-11-23 22:02:52,112 | INFO     | PanDA job id: 6891070878
[2025-11-23 23:03:56] 2025-11-23 22:02:52,112 | INFO     | task id: 47483661
[2025-11-23 23:03:56] 2025-11-23 22:02:52,112 | INFO     | errors: (none)
[2025-11-23 23:03:56] 2025-11-23 22:02:52,112 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | pilot state: finished 
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | transexitcode: 0
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | exeerrorcode: 0
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | exeerrordiag: 
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | exitcode: 0
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | exitmsg: OK
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | cpuconsumptiontime: 332069 s
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | nevents: 1000
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | neventsw: 0
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | pid: 10469
[2025-11-23 23:03:56] 2025-11-23 22:02:52,113 | INFO     | pgrp: 10469
[2025-11-23 23:03:56] 2025-11-23 22:02:52,114 | INFO     | corecount: 8
[2025-11-23 23:03:56] 2025-11-23 22:02:52,114 | INFO     | event service: False
[2025-11-23 23:03:56] 2025-11-23 22:02:52,114 | INFO     | sizes: {0: 2297968, 1: 2298653, 2: 2298852, 13: 2298852, 23: 2298908, 34: 2298936, 45: 2299092, 56: 2299120, 66: 2299148, 77: 2299176, 88: 2299232, 96: 2299802, 98
[2025-11-23 23:03:56] 2025-11-23 22:02:52,114 | INFO     | --------------------------------------------------
[2025-11-23 23:03:56] 2025-11-23 22:02:52,114 | INFO     | 
[2025-11-23 23:03:56] 2025-11-23 22:02:52,114 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-11-23 23:03:56] 2025-11-23 22:02:52,653 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,653 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 23:03:56] 2025-11-23 22:02:52,655 | INFO     | job 6891070878 has completed (purged errors)
[2025-11-23 23:03:56] 2025-11-23 22:02:52,656 | INFO     | overall cleanup function is called
[2025-11-23 23:03:56] 2025-11-23 22:02:53,677 | INFO     | --- collectZombieJob: --- 10, [10469]
[2025-11-23 23:03:56] 2025-11-23 22:02:53,677 | INFO     | zombie collector waiting for pid 10469
[2025-11-23 23:03:56] 2025-11-23 22:02:53,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 23:03:56] 2025-11-23 22:02:53,678 | INFO     | collected zombie processes
[2025-11-23 23:03:56] 2025-11-23 22:02:53,678 | INFO     | will attempt to kill all subprocesses of pid=10469
[2025-11-23 23:03:56] 2025-11-23 22:02:53,801 | INFO     | process IDs to be killed: [10469] (in reverse order)
[2025-11-23 23:03:56] 2025-11-23 22:02:54,814 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 23:03:56] 2025-11-23 22:02:54,814 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 23:03:56] 2025-11-23 22:02:54,818 | INFO     | did not find any defunct processes belonging to 10469
[2025-11-23 23:03:56] 2025-11-23 22:02:54,821 | INFO     | did not find any defunct processes belonging to 10469
[2025-11-23 23:03:56] 2025-11-23 22:02:54,908 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 23:03:56] 2025-11-23 22:02:54,909 | INFO     | ready for new job
[2025-11-23 23:03:56] 2025-11-23 22:02:54,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 23:03:56] 2025-11-23 22:02:54,916 | INFO     | ***************************************
[2025-11-23 23:03:56] 2025-11-23 22:02:54,916 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 23:03:56] 2025-11-23 22:02:54,916 | INFO     | ***************************************
[2025-11-23 23:03:56] 2025-11-23 22:02:54,917 | INFO     | 
[2025-11-23 23:03:56] 2025-11-23 22:02:54,917 | INFO     | pilot is running in a VM
[2025-11-23 23:03:56] 2025-11-23 22:02:54,917 | INFO     | architecture information:
[2025-11-23 23:03:56] 2025-11-23 22:02:54,930 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:03:56] 2025-11-23 22:02:55,176 | INFO     | cat /etc/os-release:
[2025-11-23 23:03:56] NAME="CentOS Linux"
[2025-11-23 23:03:56] VERSION="7 (Core)"
[2025-11-23 23:03:56] ID="centos"
[2025-11-23 23:03:56] ID_LIKE="rhel fedora"
[2025-11-23 23:03:56] VERSION_ID="7"
[2025-11-23 23:03:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:03:56] ANSI_COLOR="0;31"
[2025-11-23 23:03:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:03:56] HOME_URL="https://www.centos.org/"
[2025-11-23 23:03:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:03:56] 
[2025-11-23 23:03:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:03:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:03:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:03:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:03:56] 
[2025-11-23 23:03:56] 2025-11-23 22:02:55,176 | INFO     | ***************************************
[2025-11-23 23:03:56] 2025-11-23 22:02:55,680 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-11-23 23:03:56] 2025-11-23 22:02:55,909 | INFO     | sufficient remaining disk space (494963523584 B)
[2025-11-23 23:03:56] 2025-11-23 22:02:55,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:03:56] 2025-11-23 22:02:55,910 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:03:56] 2025-11-23 22:02:55,910 | INFO     | update_server=False
[2025-11-23 23:03:56] 2025-11-23 22:02:55,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:03:56] 2025-11-23 22:02:55,933 | INFO     | all data control threads have been joined
[2025-11-23 23:03:56] 2025-11-23 22:02:56,484 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:03:56] 2025-11-23 22:02:56,485 | INFO     | aborting loop
[2025-11-23 23:03:56] 2025-11-23 22:02:56,515 | INFO     | all job control threads have been joined
[2025-11-23 23:03:56] 2025-11-23 22:02:56,517 | INFO     | all payload control threads have been joined
[2025-11-23 23:03:56] 2025-11-23 22:02:56,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:03:56] 2025-11-23 22:02:56,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:03:56] 2025-11-23 22:02:56,918 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:56,939 | INFO     | [data] control thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:03:56] 2025-11-23 22:02:57,154 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,294 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,334 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,490 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,521 | INFO     | [job] control thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,523 | INFO     | [payload] control thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,713 | INFO     | [job] validate thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:57,999 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:58,115 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:58,132 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:58,337 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:02:58,837 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:03:00,811 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:03:56] 2025-11-23 22:03:24,161 | INFO     | PID=3854 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 23:03:56] 2025-11-23 22:03:24,161 | INFO     | .. there are 9 such processes running
[2025-11-23 23:03:56] 2025-11-23 22:03:24,163 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:03:56] 2025-11-23 22:03:24,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:03:56] 2025-11-23 22:03:24,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:03:56] 2025-11-23 22:03:44,661 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:03:56] 2025-11-23 22:03:46,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139772373440320)>', '<ExcThread(monitor, started 139771707905792)>']
[2025-11-23 23:03:56] 2025-11-23 22:03:47,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:03:56] 2025-11-23 22:03:47,300 | INFO     | [monitor] control thread has ended
[2025-11-23 23:03:56] 2025-11-23 22:03:51,609 | INFO     | all workflow threads have been joined
[2025-11-23 23:03:56] 2025-11-23 22:03:51,609 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:03:56] 2025-11-23 22:03:51,610 | INFO     | traces error code: 0
[2025-11-23 23:03:56] 2025-11-23 22:03:51,610 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:03:56] 2025-11-23 22:03:52,059 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:03:56] 2025-11-23 22:03:52,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:03:56] 2025-11-23 22:03:52,134 [wrapper] pilotpid: 3854
[2025-11-23 23:03:56] 2025-11-23 22:03:52,182 [wrapper] Pilot exit status: 0
[2025-11-23 23:03:56] 2025-11-23 22:03:52,474 [wrapper] pandaids: 6891070878
[2025-11-23 23:03:56] 2025-11-23 22:03:53,463 [wrapper] cleanup supervisor_pilot 23916 3855
[2025-11-23 23:03:56] 2025-11-23 22:03:53,523 [wrapper] Test setup, not cleaning
[2025-11-23 23:03:56] 2025-11-23 22:03:53,593 [wrapper] apfmon messages muted
[2025-11-23 23:03:56] 2025-11-23 22:03:53,690 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:03:56] 2025-11-23 22:03:53,752 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:03:56]  *** Error codes and diagnostics ***
[2025-11-23 23:03:56]     "exeErrorCode": 0,
[2025-11-23 23:03:56]     "exeErrorDiag": "",
[2025-11-23 23:03:56]     "pilotErrorCode": 0,
[2025-11-23 23:03:56]     "pilotErrorDiag": "",
[2025-11-23 23:03:56]  *** Listing of results directory ***
[2025-11-23 23:03:56] total 1303708
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc    576529 Nov 18 06:55 pilot3.tar.gz
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc      5112 Nov 18 06:58 queuedata.json
[2025-11-23 23:03:56] -rwx------. 1 boinc boinc     36292 Nov 18 06:59 runpilot2-wrapper.sh
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc       100 Nov 22 21:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:03:56] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 21:56 run_atlas
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc       105 Nov 22 21:56 job.xml
[2025-11-23 23:03:56] -rw-r--r--. 2 boinc boinc 408932266 Nov 22 21:56 EVNT.47483658._000151.pool.root.1
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc      6392 Nov 22 21:56 init_data.xml
[2025-11-23 23:03:56] -rw-r--r--. 2 boinc boinc     15120 Nov 22 21:56 start_atlas.sh
[2025-11-23 23:03:56] drwxrwx--x. 2 boinc boinc        68 Nov 22 21:56 shared
[2025-11-23 23:03:56] -rw-r--r--. 2 boinc boinc    590100 Nov 22 21:56 input.tar.gz
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc         0 Nov 22 21:56 boinc_lockfile
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc      2773 Nov 22 21:57 pandaJob.out
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc    989768 Nov 22 22:00 agis_schedconf.cvmfs.json
[2025-11-23 23:03:56] drwx------. 5 boinc boinc      4096 Nov 22 22:01 pilot3
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc       533 Nov 23 22:35 boinc_task_state.xml
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc 893058127 Nov 23 22:59 HITS.47483661._001505.pool.root.1
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc      1031 Nov 23 23:00 memory_monitor_summary.json
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc   1526164 Nov 23 23:01 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc   2551703 Nov 23 23:01 log.47483661._001505.job.log.tgz.1
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc      7953 Nov 23 23:02 heartbeat.json
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc        95 Nov 23 23:03 pilot_heartbeat.json
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc      8192 Nov 23 23:03 boinc_mmap_file
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc        29 Nov 23 23:03 wrapper_checkpoint.txt
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc      4883 Nov 23 23:03 pilotlog.txt
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc  12001047 Nov 23 23:03 log.47483661._001505.job.log.1
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc       353 Nov 23 23:03 output.list
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc       620 Nov 23 23:03 runtime_log
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc  14571520 Nov 23 23:03 result.tar.gz
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc      8703 Nov 23 23:03 runtime_log.err
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc       662 Nov 23 23:03 2ZANDmEvTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzHKODm9DR8Qo.diag
[2025-11-23 23:03:56] -rw-r--r--. 1 boinc boinc     21454 Nov 23 23:03 stderr.txt
[2025-11-23 23:03:56] HITS file was successfully produced:
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc 893058127 Nov 23 22:59 shared/HITS.pool.root.1
[2025-11-23 23:03:56]  *** Contents of shared directory: ***
[2025-11-23 23:03:56] total 1286304
[2025-11-23 23:03:56] -rw-r--r--. 2 boinc boinc 408932266 Nov 22 21:56 ATLAS.root_0
[2025-11-23 23:03:56] -rw-r--r--. 2 boinc boinc     15120 Nov 22 21:56 start_atlas.sh
[2025-11-23 23:03:56] -rw-r--r--. 2 boinc boinc    590100 Nov 22 21:56 input.tar.gz
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc 893058127 Nov 23 22:59 HITS.pool.root.1
[2025-11-23 23:03:56] -rw-------. 1 boinc boinc  14571520 Nov 23 23:03 result.tar.gz
23:03:57 (32461): run_atlas exited; CPU time 332541.601769
23:03:57 (32461): called boinc_finish(0)

</stderr_txt>
]]>

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