Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:08:10 (23938): wrapper (7.7.26015): starting
18:08:10 (23938): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 18:08:10] Arguments: --nthreads 8
[2025-11-19 18:08:10] Threads: 8
[2025-11-19 18:08:10] Checking for CVMFS
[2025-11-19 18:08:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 18:08:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 18:08:10] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 18:08:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 18:08:10] 2.11.2.0 2873 50959 87932 153060 1 71 16034375 20275201 1 130560 0 12010711 99.842 2761251 33117 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 18:08:10] CVMFS is ok
[2025-11-19 18:08:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 18:08:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 18:08:10] Further information can be found at the LHC@home message board.
[2025-11-19 18:08:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 18:08:10] Checking for apptainer binary...
[2025-11-19 18:08:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 18:08:10] Running /usr/bin/apptainer --version
[2025-11-19 18:08:10] apptainer version 1.3.2-1.el7
[2025-11-19 18:08:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 18:08:12] c-115-13.aglt2.org
[2025-11-19 18:08:12] apptainer works
[2025-11-19 18:08:12] Set ATHENA_PROC_NUMBER=8
[2025-11-19 18:08:12] Set ATHENA_CORE_NUMBER=8
[2025-11-19 18:08:12] Starting ATLAS job with PandaID=6891584504
[2025-11-19 18:08:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 05:07:40]  *** The last 200 lines of the pilot log: ***
[2025-11-20 05:07:40] 2025-11-20 10:06:45,283 | INFO     | time since job start (39496s) is within the limit (172800.0s)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,340 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 05:07:40] 2025-11-20 10:06:46,342 | INFO     | monitor loop #2916: job 0:6891584504 is in state 'finished'
[2025-11-20 05:07:40] 2025-11-20 10:06:46,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,344 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-20 05:07:40] 2025-11-20 10:06:46,346 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891584504/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,347 | INFO     | extracted standard info from prmon json
[2025-11-20 05:07:40] 2025-11-20 10:06:46,347 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 05:07:40] 2025-11-20 10:06:46,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 05:07:40] 2025-11-20 10:06:46,360 | INFO     | fitting pss+swap vs Time
[2025-11-20 05:07:40] 2025-11-20 10:06:46,361 | INFO     | sum of square deviations: 83982884509.62608
[2025-11-20 05:07:40] 2025-11-20 10:06:46,369 | INFO     | sum of deviations: 715636344029.2604
[2025-11-20 05:07:40] 2025-11-20 10:06:46,369 | INFO     | mean x: 1763613443.6120555
[2025-11-20 05:07:40] 2025-11-20 10:06:46,369 | INFO     | mean y: 3287391.120556414
[2025-11-20 05:07:40] 2025-11-20 10:06:46,370 | INFO     | intersect: -15024844643.600441
[2025-11-20 05:07:40] 2025-11-20 10:06:46,370 | INFO     | chi2: 5.871575474865059
[2025-11-20 05:07:40] 2025-11-20 10:06:46,371 | INFO     | sum of square deviations: 82050959760.23825
[2025-11-20 05:07:40] 2025-11-20 10:06:46,379 | INFO     | sum of deviations: 949031899989.351
[2025-11-20 05:07:40] 2025-11-20 10:06:46,379 | INFO     | mean x: 1763613291.1168225
[2025-11-20 05:07:40] 2025-11-20 10:06:46,379 | INFO     | mean y: 3305805.328660436
[2025-11-20 05:07:40] 2025-11-20 10:06:46,380 | INFO     | intersect: -20395301077.58747
[2025-11-20 05:07:40] 2025-11-20 10:06:46,380 | INFO     | chi2: 2.983107114451829
[2025-11-20 05:07:40] 2025-11-20 10:06:46,380 | INFO     | current chi2=2.983107114451829 (change=49.194094034525094 %)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,381 | INFO     | sum of square deviations: 80148896035.82056
[2025-11-20 05:07:40] 2025-11-20 10:06:46,389 | INFO     | sum of deviations: 998276786064.091
[2025-11-20 05:07:40] 2025-11-20 10:06:46,389 | INFO     | mean x: 1763613138.621664
[2025-11-20 05:07:40] 2025-11-20 10:06:46,389 | INFO     | mean y: 3309746.6310832025
[2025-11-20 05:07:40] 2025-11-20 10:06:46,390 | INFO     | intersect: -21962982279.360065
[2025-11-20 05:07:40] 2025-11-20 10:06:46,390 | INFO     | chi2: 2.7548460687377307
[2025-11-20 05:07:40] 2025-11-20 10:06:46,390 | INFO     | current chi2=2.7548460687377307 (change=7.651788452659804 %)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,390 | INFO     | right removable region: 636
[2025-11-20 05:07:40] 2025-11-20 10:06:46,391 | INFO     | sum of square deviations: 82050718200.23819
[2025-11-20 05:07:40] 2025-11-20 10:06:46,400 | INFO     | sum of deviations: 501872279821.8033
[2025-11-20 05:07:40] 2025-11-20 10:06:46,400 | INFO     | mean x: 1763613596.1168225
[2025-11-20 05:07:40] 2025-11-20 10:06:46,400 | INFO     | mean y: 3304231.962616822
[2025-11-20 05:07:40] 2025-11-20 10:06:46,400 | INFO     | intersect: -10784033107.947582
[2025-11-20 05:07:40] 2025-11-20 10:06:46,401 | INFO     | chi2: 3.3471090301199635
[2025-11-20 05:07:40] 2025-11-20 10:06:46,401 | INFO     | current chi2=3.3471090301199635 (change=42.9947031346491 %)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,402 | INFO     | sum of square deviations: 80148491362.30148
[2025-11-20 05:07:40] 2025-11-20 10:06:46,410 | INFO     | sum of deviations: 444337811812.0361
[2025-11-20 05:07:40] 2025-11-20 10:06:46,410 | INFO     | mean x: 1763613748.6185243
[2025-11-20 05:07:40] 2025-11-20 10:06:46,410 | INFO     | mean y: 3308842.251177394
[2025-11-20 05:07:40] 2025-11-20 10:06:46,410 | INFO     | intersect: -9774046421.997366
[2025-11-20 05:07:40] 2025-11-20 10:06:46,411 | INFO     | chi2: 3.247619999723959
[2025-11-20 05:07:40] 2025-11-20 10:06:46,411 | INFO     | current chi2=3.247619999723959 (change=2.9723869016731364 %)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,411 | INFO     | left removable region: 20
[2025-11-20 05:07:40] 2025-11-20 10:06:46,412 | INFO     | sum of square deviations: 72480327389.61044
[2025-11-20 05:07:40] 2025-11-20 10:06:46,420 | INFO     | sum of deviations: 654794974678.8693
[2025-11-20 05:07:40] 2025-11-20 10:06:46,420 | INFO     | mean x: 1763613718.1298702
[2025-11-20 05:07:40] 2025-11-20 10:06:46,420 | INFO     | mean y: 3337605.3766233767
[2025-11-20 05:07:40] 2025-11-20 10:06:46,420 | INFO     | intersect: -15929336010.991287
[2025-11-20 05:07:40] 2025-11-20 10:06:46,421 | INFO     | chi2: 0.06552001595359876
[2025-11-20 05:07:40] 2025-11-20 10:06:46,421 | INFO     | current memory leak: 9.03 B/s (using 616 data points, chi2=0.07)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,421 | INFO     | could have reported an average CPU frequency of 2396 MHz (25 samples)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,421 | INFO     | ..............................
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . Timing measurements:
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . get job = 0 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . initial setup = 2 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . payload setup = 8 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . stage-in = 0 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . payload execution = 39457 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . stage-out = 3 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | . log creation = 0 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,422 | INFO     | ..............................
[2025-11-20 05:07:40] 2025-11-20 10:06:46,508 | INFO     | 
[2025-11-20 05:07:40] 2025-11-20 10:06:46,508 | INFO     | job summary report
[2025-11-20 05:07:40] 2025-11-20 10:06:46,508 | INFO     | --------------------------------------------------
[2025-11-20 05:07:40] 2025-11-20 10:06:46,508 | INFO     | PanDA job id: 6891584504
[2025-11-20 05:07:40] 2025-11-20 10:06:46,508 | INFO     | task id: 47493068
[2025-11-20 05:07:40] 2025-11-20 10:06:46,508 | INFO     | errors: (none)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,508 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | pilot state: finished 
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | transexitcode: 0
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | exeerrorcode: 0
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | exeerrordiag: 
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | exitcode: 0
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | exitmsg: OK
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | cpuconsumptiontime: 306779 s
[2025-11-20 05:07:40] 2025-11-20 10:06:46,509 | INFO     | nevents: 1000
[2025-11-20 05:07:40] 2025-11-20 10:06:46,510 | INFO     | neventsw: 0
[2025-11-20 05:07:40] 2025-11-20 10:06:46,510 | INFO     | pid: 2635
[2025-11-20 05:07:40] 2025-11-20 10:06:46,510 | INFO     | pgrp: 2635
[2025-11-20 05:07:40] 2025-11-20 10:06:46,510 | INFO     | corecount: 8
[2025-11-20 05:07:40] 2025-11-20 10:06:46,510 | INFO     | event service: False
[2025-11-20 05:07:40] 2025-11-20 10:06:46,510 | INFO     | sizes: {0: 2296371, 1: 2297227, 7: 2297489, 12: 2297517, 39470: 2340899, 39474: 2350077, 39481: 2350331}
[2025-11-20 05:07:40] 2025-11-20 10:06:46,511 | INFO     | --------------------------------------------------
[2025-11-20 05:07:40] 2025-11-20 10:06:46,511 | INFO     | 
[2025-11-20 05:07:40] 2025-11-20 10:06:46,511 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 05:07:40] 2025-11-20 10:06:46,539 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,539 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,540 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,540 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,540 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,540 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,541 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,541 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,542 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,543 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,543 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,543 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,543 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,543 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,544 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 05:07:40] 2025-11-20 10:06:46,544 | INFO     | job 6891584504 has completed (purged errors)
[2025-11-20 05:07:40] 2025-11-20 10:06:46,544 | INFO     | overall cleanup function is called
[2025-11-20 05:07:40] 2025-11-20 10:06:47,560 | INFO     | --- collectZombieJob: --- 10, [2635]
[2025-11-20 05:07:40] 2025-11-20 10:06:47,560 | INFO     | zombie collector waiting for pid 2635
[2025-11-20 05:07:40] 2025-11-20 10:06:47,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 05:07:40] 2025-11-20 10:06:47,561 | INFO     | collected zombie processes
[2025-11-20 05:07:40] 2025-11-20 10:06:47,561 | INFO     | will attempt to kill all subprocesses of pid=2635
[2025-11-20 05:07:40] 2025-11-20 10:06:47,648 | INFO     | process IDs to be killed: [2635] (in reverse order)
[2025-11-20 05:07:40] 2025-11-20 10:06:47,704 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 05:07:40] 2025-11-20 10:06:47,705 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 05:07:40] 2025-11-20 10:06:47,711 | INFO     | did not find any defunct processes belonging to 2635
[2025-11-20 05:07:40] 2025-11-20 10:06:47,714 | INFO     | did not find any defunct processes belonging to 2635
[2025-11-20 05:07:40] 2025-11-20 10:06:47,717 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 05:07:40] 2025-11-20 10:06:47,717 | INFO     | ready for new job
[2025-11-20 05:07:40] 2025-11-20 10:06:47,717 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 05:07:40] 2025-11-20 10:06:47,720 | INFO     | ***************************************
[2025-11-20 05:07:40] 2025-11-20 10:06:47,721 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 05:07:40] 2025-11-20 10:06:47,721 | INFO     | ***************************************
[2025-11-20 05:07:40] 2025-11-20 10:06:47,721 | INFO     | 
[2025-11-20 05:07:40] 2025-11-20 10:06:47,722 | INFO     | architecture information:
[2025-11-20 05:07:40] 2025-11-20 10:06:47,722 | INFO     | executing command: cat /etc/os-release
[2025-11-20 05:07:40] 2025-11-20 10:06:47,739 | INFO     | cat /etc/os-release:
[2025-11-20 05:07:40] NAME="CentOS Linux"
[2025-11-20 05:07:40] VERSION="7 (Core)"
[2025-11-20 05:07:40] ID="centos"
[2025-11-20 05:07:40] ID_LIKE="rhel fedora"
[2025-11-20 05:07:40] VERSION_ID="7"
[2025-11-20 05:07:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 05:07:40] ANSI_COLOR="0;31"
[2025-11-20 05:07:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 05:07:40] HOME_URL="https://www.centos.org/"
[2025-11-20 05:07:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 05:07:40] 
[2025-11-20 05:07:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 05:07:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 05:07:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 05:07:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 05:07:40] 
[2025-11-20 05:07:40] 2025-11-20 10:06:47,740 | INFO     | ***************************************
[2025-11-20 05:07:40] 2025-11-20 10:06:48,243 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 05:07:40] 2025-11-20 10:06:48,263 | INFO     | sufficient remaining disk space (17474519040 B)
[2025-11-20 05:07:40] 2025-11-20 10:06:48,264 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 05:07:40] 2025-11-20 10:06:48,264 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 05:07:40] 2025-11-20 10:06:48,264 | INFO     | update_server=False
[2025-11-20 05:07:40] 2025-11-20 10:06:48,265 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 05:07:40] 2025-11-20 10:06:48,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:07:40] 2025-11-20 10:06:48,265 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 05:07:40] 2025-11-20 10:06:48,266 | INFO     | aborting loop
[2025-11-20 05:07:40] 2025-11-20 10:06:48,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 05:07:40] 2025-11-20 10:06:48,612 | INFO     | all job control threads have been joined
[2025-11-20 05:07:40] 2025-11-20 10:06:48,932 | INFO     | all payload control threads have been joined
[2025-11-20 05:07:40] 2025-11-20 10:06:49,270 | INFO     | [job] retrieve thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,271 | INFO     | [job] queue monitor thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,272 | INFO     | [job] job monitor thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,312 | INFO     | all data control threads have been joined
[2025-11-20 05:07:40] 2025-11-20 10:06:49,564 | INFO     | [job] validate thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,617 | INFO     | [job] control thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,666 | INFO     | [payload] failed_post thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,877 | INFO     | [data] copytool_in thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,883 | INFO     | [payload] validate_post thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:49,937 | INFO     | [payload] control thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:50,229 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:50,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 05:07:40] 2025-11-20 10:06:50,272 | INFO     | [data] copytool_out thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:50,318 | INFO     | [data] control thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:50,353 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:50,563 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:54,276 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:06:58,355 | INFO     | job.realtimelogging is not enabled
[2025-11-20 05:07:40] 2025-11-20 10:06:59,360 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 05:07:40] 2025-11-20 10:07:18,500 | INFO     | PID=28022 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 05:07:40] 2025-11-20 10:07:18,500 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 05:07:40] 2025-11-20 10:07:18,500 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 05:07:40] 2025-11-20 10:07:18,500 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 05:07:40] 2025-11-20 10:07:34,226 | INFO     | [monitor] cgroup control has ended
[2025-11-20 05:07:40] 2025-11-20 10:07:35,568 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151675692864)>', '<ExcThread(monitor, started 140150998812416)>']
[2025-11-20 05:07:40] 2025-11-20 10:07:35,584 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 05:07:40] 2025-11-20 10:07:35,584 | INFO     | [monitor] control thread has ended
[2025-11-20 05:07:40] 2025-11-20 10:07:40,586 | INFO     | all workflow threads have been joined
[2025-11-20 05:07:40] 2025-11-20 10:07:40,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 05:07:40] 2025-11-20 10:07:40,587 | INFO     | traces error code: 0
[2025-11-20 05:07:40] 2025-11-20 10:07:40,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 05:07:40] 2025-11-20 10:07:40,696 [wrapper] ==== pilot stdout END ====
[2025-11-20 05:07:40] 2025-11-20 10:07:40,701 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 05:07:40] 2025-11-20 10:07:40,705 [wrapper] pilotpid: 28022
[2025-11-20 05:07:40] 2025-11-20 10:07:40,710 [wrapper] Pilot exit status: 0
[2025-11-20 05:07:40] 2025-11-20 10:07:40,728 [wrapper] pandaids: 6891584504
[2025-11-20 05:07:40] 2025-11-20 10:07:40,779 [wrapper] cleanup supervisor_pilot 12470 28023
[2025-11-20 05:07:40] 2025-11-20 10:07:40,784 [wrapper] Test setup, not cleaning
[2025-11-20 05:07:40] 2025-11-20 10:07:40,788 [wrapper] apfmon messages muted
[2025-11-20 05:07:40] 2025-11-20 10:07:40,793 [wrapper] ==== wrapper stdout END ====
[2025-11-20 05:07:40] 2025-11-20 10:07:40,798 [wrapper] ==== wrapper stderr END ====
[2025-11-20 05:07:40]  *** Error codes and diagnostics ***
[2025-11-20 05:07:40]     "exeErrorCode": 0,
[2025-11-20 05:07:40]     "exeErrorDiag": "",
[2025-11-20 05:07:40]     "pilotErrorCode": 0,
[2025-11-20 05:07:40]     "pilotErrorDiag": "",
[2025-11-20 05:07:40]  *** Listing of results directory ***
[2025-11-20 05:07:40] total 1312960
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 11:45 pilot3.tar.gz
[2025-11-20 05:07:40] -rwx------ 1 boincer umatlas     36292 Nov 18 12:18 runpilot2-wrapper.sh
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 12:18 queuedata.json
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas       100 Nov 19 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 05:07:40] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 18:08 run_atlas
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas       105 Nov 19 18:08 job.xml
[2025-11-20 05:07:40] -rw-r--r-- 2 boincer umatlas 408872931 Nov 19 18:08 EVNT.47493065._000463.pool.root.1
[2025-11-20 05:07:40] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 18:08 start_atlas.sh
[2025-11-20 05:07:40] drwxrwx--x 2 boincer umatlas      4096 Nov 19 18:08 shared
[2025-11-20 05:07:40] -rw-r--r-- 2 boincer umatlas    590095 Nov 19 18:08 input.tar.gz
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas         0 Nov 19 18:08 boinc_lockfile
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas      2772 Nov 19 18:08 pandaJob.out
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas    989435 Nov 19 18:08 agis_schedconf.cvmfs.json
[2025-11-20 05:07:40] drwx------ 5 boincer umatlas      4096 Nov 19 18:08 pilot3
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas       533 Nov 20 04:56 boinc_task_state.xml
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas      5912 Nov 20 05:04 init_data.xml
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas 916923835 Nov 20 05:06 HITS.47493068._004627.pool.root.1
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas      1064 Nov 20 05:06 memory_monitor_summary.json
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas        95 Nov 20 05:06 pilot_heartbeat.json
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas   1525063 Nov 20 05:06 agis_ddmendpoints.agis.ALL.json
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas   1913287 Nov 20 05:06 log.47493068._004627.job.log.tgz.1
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas      8659 Nov 20 05:06 heartbeat.json
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 05:07 boinc_mmap_file
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas        29 Nov 20 05:07 wrapper_checkpoint.txt
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas      4818 Nov 20 05:07 pilotlog.txt
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas   5463418 Nov 20 05:07 log.47493068._004627.job.log.1
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas       353 Nov 20 05:07 output.list
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas       620 Nov 20 05:07 runtime_log
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas   7393280 Nov 20 05:07 result.tar.gz
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas       668 Nov 20 05:07 UcrNDmYWef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5zFKDm7JTgXn.diag
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas      8704 Nov 20 05:07 runtime_log.err
[2025-11-20 05:07:40] -rw-r--r-- 1 boincer umatlas     21255 Nov 20 05:07 stderr.txt
[2025-11-20 05:07:40] HITS file was successfully produced:
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas 916923835 Nov 20 05:06 shared/HITS.pool.root.1
[2025-11-20 05:07:40]  *** Contents of shared directory: ***
[2025-11-20 05:07:40] total 1302552
[2025-11-20 05:07:40] -rw-r--r-- 2 boincer umatlas 408872931 Nov 19 18:08 ATLAS.root_0
[2025-11-20 05:07:40] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 18:08 start_atlas.sh
[2025-11-20 05:07:40] -rw-r--r-- 2 boincer umatlas    590095 Nov 19 18:08 input.tar.gz
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas 916923835 Nov 20 05:06 HITS.pool.root.1
[2025-11-20 05:07:40] -rw------- 1 boincer umatlas   7393280 Nov 20 05:07 result.tar.gz
05:07:42 (23938): run_atlas exited; CPU time 304929.644356
05:07:42 (23938): called boinc_finish(0)

</stderr_txt>
]]>

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