Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:31 (2671305): wrapper (7.7.26015): starting
00:00:31 (2671305): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 00:00:31] Arguments: --nthreads 12
[2025-11-20 00:00:31] Threads: 12
[2025-11-20 00:00:31] Checking for CVMFS
[2025-11-20 00:00:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:00:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:00:34] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:00:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:00:35] 2.13.2.0 9432 24753 172308 153069 0 64 27702373 39288832 9535 16776704 0 10808915 99.668 8603838 34780 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 00:00:35] CVMFS is ok
[2025-11-20 00:00:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:00:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:00:35] Further information can be found at the LHC@home message board.
[2025-11-20 00:00:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:00:35] Checking for apptainer binary...
[2025-11-20 00:00:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:00:35] Running /usr/bin/apptainer --version
[2025-11-20 00:00:36] apptainer version 1.4.4-1.el9
[2025-11-20 00:00:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:00:39] c-211-5.aglt2.org
[2025-11-20 00:00:39] apptainer works
[2025-11-20 00:00:39] Set ATHENA_PROC_NUMBER=12
[2025-11-20 00:00:39] Set ATHENA_CORE_NUMBER=12
[2025-11-20 00:00:39] Starting ATLAS job with PandaID=6892548718
[2025-11-20 00:00:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 00:24:55]  *** The last 200 lines of the pilot log: ***
[2025-11-21 00:24:55] 2025-11-21 05:24:08,338 | INFO     | monitor loop #5210: job 0:6892548718 is in state 'finished'
[2025-11-21 00:24:55] 2025-11-21 05:24:08,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 00:24:55] 2025-11-21 05:24:08,568 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-21 00:24:55] 2025-11-21 05:24:09,487 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 00:24:55] 2025-11-21 05:24:09,487 | INFO     | job 6892548718 has state=finished
[2025-11-21 00:24:55] 2025-11-21 05:24:09,488 | INFO     | preparing for final server update for job 6892548718 in state='finished'
[2025-11-21 00:24:55] 2025-11-21 05:24:09,488 | INFO     | this job has now completed (state=finished)
[2025-11-21 00:24:55] 2025-11-21 05:24:09,488 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-21 00:24:55] 2025-11-21 05:24:09,488 | INFO     | log transfer has been attempted: DONE
[2025-11-21 00:24:55] 2025-11-21 05:24:09,489 | INFO     | job 6892548718 has finished - writing final server update
[2025-11-21 00:24:55] 2025-11-21 05:24:09,489 | INFO     | total number of processed events: 1000 (read)
[2025-11-21 00:24:55] 2025-11-21 05:24:09,490 | INFO     | executing command: lscpu
[2025-11-21 00:24:55] 2025-11-21 05:24:09,528 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-21 00:24:55] 2025-11-21 05:24:09,708 | INFO     | time since job start (87668s) is within the limit (172800.0s)
[2025-11-21 00:24:55] 2025-11-21 05:24:10,858 | INFO     | monitor loop #5211: job 0:6892548718 is in state 'finished'
[2025-11-21 00:24:55] 2025-11-21 05:24:10,859 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 00:24:55] 2025-11-21 05:24:11,714 | INFO     | time since job start (87670s) is within the limit (172800.0s)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,054 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 00:24:55] 2025-11-21 05:24:13,061 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2640.222675
[2025-11-21 00:24:55] 2025-11-21 05:24:13,068 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6892548718/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,069 | INFO     | extracted standard info from prmon json
[2025-11-21 00:24:55] 2025-11-21 05:24:13,069 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 00:24:55] 2025-11-21 05:24:13,069 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 00:24:55] 2025-11-21 05:24:13,095 | INFO     | fitting pss+swap vs Time
[2025-11-21 00:24:55] 2025-11-21 05:24:13,097 | INFO     | sum of square deviations: 914370876007.4857
[2025-11-21 00:24:55] 2025-11-21 05:24:13,148 | INFO     | sum of deviations: 9611318977650.314
[2025-11-21 00:24:55] 2025-11-21 05:24:13,149 | INFO     | mean x: 1763658932.049512
[2025-11-21 00:24:55] 2025-11-21 05:24:13,149 | INFO     | mean y: 3463251.9951185496
[2025-11-21 00:24:55] 2025-11-21 05:24:13,149 | INFO     | intersect: -18535063081.78893
[2025-11-21 00:24:55] 2025-11-21 05:24:13,151 | INFO     | chi2: 24.699357159287036
[2025-11-21 00:24:55] 2025-11-21 05:24:13,153 | INFO     | sum of square deviations: 904842864059.012
[2025-11-21 00:24:55] 2025-11-21 05:24:13,204 | INFO     | sum of deviations: 10156365687944.438
[2025-11-21 00:24:55] 2025-11-21 05:24:13,204 | INFO     | mean x: 1763658779.5759273
[2025-11-21 00:24:55] 2025-11-21 05:24:13,204 | INFO     | mean y: 3471970.89013296
[2025-11-21 00:24:55] 2025-11-21 05:24:13,204 | INFO     | intersect: -19792632110.402264
[2025-11-21 00:24:55] 2025-11-21 05:24:13,206 | INFO     | chi2: 21.847082193901098
[2025-11-21 00:24:55] 2025-11-21 05:24:13,206 | INFO     | current chi2=21.847082193901098 (change=11.547972471475735 %)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,206 | INFO     | right removable region: 1428
[2025-11-21 00:24:55] 2025-11-21 05:24:13,208 | INFO     | sum of square deviations: 904836260199.0114
[2025-11-21 00:24:55] 2025-11-21 05:24:13,259 | INFO     | sum of deviations: 8886771885821.982
[2025-11-21 00:24:55] 2025-11-21 05:24:13,259 | INFO     | mean x: 1763659084.5759273
[2025-11-21 00:24:55] 2025-11-21 05:24:13,259 | INFO     | mean y: 3474841.8712386284
[2025-11-21 00:24:55] 2025-11-21 05:24:13,259 | INFO     | intersect: -17318151908.074306
[2025-11-21 00:24:55] 2025-11-21 05:24:13,261 | INFO     | chi2: 19.877590964959193
[2025-11-21 00:24:55] 2025-11-21 05:24:13,261 | INFO     | current chi2=19.877590964959193 (change=19.521828698747505 %)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,262 | INFO     | left removable region: 10
[2025-11-21 00:24:55] 2025-11-21 05:24:13,263 | INFO     | sum of square deviations: 884101751132.5416
[2025-11-21 00:24:55] 2025-11-21 05:24:13,313 | INFO     | sum of deviations: 8852516691636.795
[2025-11-21 00:24:55] 2025-11-21 05:24:13,313 | INFO     | mean x: 1763659054.1339915
[2025-11-21 00:24:55] 2025-11-21 05:24:13,313 | INFO     | mean y: 3494686.369534556
[2025-11-21 00:24:55] 2025-11-21 05:24:13,314 | INFO     | intersect: -17656035107.65855
[2025-11-21 00:24:55] 2025-11-21 05:24:13,316 | INFO     | chi2: 13.338525087437286
[2025-11-21 00:24:55] 2025-11-21 05:24:13,316 | INFO     | current memory leak: 10.01 B/s (using 1418 data points, chi2=13.34)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,317 | INFO     | could have reported an average CPU frequency of 2600 MHz (51 samples)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,317 | INFO     | ..............................
[2025-11-21 00:24:55] 2025-11-21 05:24:13,317 | INFO     | . Timing measurements:
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | . get job = 1 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | . initial setup = 17 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | . payload setup = 60 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | . stage-in = 1 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | . payload execution = 87466 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | . stage-out = 3 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | . log creation = 1 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,318 | INFO     | ..............................
[2025-11-21 00:24:55] 2025-11-21 05:24:13,425 | INFO     | 
[2025-11-21 00:24:55] 2025-11-21 05:24:13,425 | INFO     | job summary report
[2025-11-21 00:24:55] 2025-11-21 05:24:13,425 | INFO     | --------------------------------------------------
[2025-11-21 00:24:55] 2025-11-21 05:24:13,425 | INFO     | PanDA job id: 6892548718
[2025-11-21 00:24:55] 2025-11-21 05:24:13,425 | INFO     | task id: 47493029
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | errors: (none)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | pilot state: finished 
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | transexitcode: 0
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | exeerrorcode: 0
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | exeerrordiag: 
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | exitcode: 0
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | exitmsg: OK
[2025-11-21 00:24:55] 2025-11-21 05:24:13,426 | INFO     | cpuconsumptiontime: 301384 s
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | nevents: 1000
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | neventsw: 0
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | pid: 2688746
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | pgrp: 2688746
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | corecount: 12
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | event service: False
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | sizes: {0: 2296372, 1: 2296973, 2: 2297057, 3: 2297085, 5: 2297169, 7: 2297169, 8: 2297468, 19: 2297496, 32: 2297524, 43: 2297552, 55: 2297580, 68: 2298150, 69: 22
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | --------------------------------------------------
[2025-11-21 00:24:55] 2025-11-21 05:24:13,427 | INFO     | 
[2025-11-21 00:24:55] 2025-11-21 05:24:13,428 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 00:24:55] 2025-11-21 05:24:13,444 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,445 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,445 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,445 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,446 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,447 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,447 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,447 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,447 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 00:24:55] 2025-11-21 05:24:13,447 | INFO     | job 6892548718 has completed (purged errors)
[2025-11-21 00:24:55] 2025-11-21 05:24:13,447 | INFO     | overall cleanup function is called
[2025-11-21 00:24:55] 2025-11-21 05:24:14,464 | INFO     | --- collectZombieJob: --- 10, [2688746]
[2025-11-21 00:24:55] 2025-11-21 05:24:14,465 | INFO     | zombie collector waiting for pid 2688746
[2025-11-21 00:24:55] 2025-11-21 05:24:14,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 00:24:55] 2025-11-21 05:24:14,465 | INFO     | collected zombie processes
[2025-11-21 00:24:55] 2025-11-21 05:24:14,465 | INFO     | will attempt to kill all subprocesses of pid=2688746
[2025-11-21 00:24:55] 2025-11-21 05:24:14,706 | INFO     | process IDs to be killed: [2688746] (in reverse order)
[2025-11-21 00:24:55] 2025-11-21 05:24:14,775 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 00:24:55] 2025-11-21 05:24:14,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 00:24:55] 2025-11-21 05:24:14,783 | INFO     | did not find any defunct processes belonging to 2688746
[2025-11-21 00:24:55] 2025-11-21 05:24:14,789 | INFO     | did not find any defunct processes belonging to 2688746
[2025-11-21 00:24:55] 2025-11-21 05:24:14,790 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 00:24:55] 2025-11-21 05:24:14,791 | INFO     | ready for new job
[2025-11-21 00:24:55] 2025-11-21 05:24:14,791 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 00:24:55] 2025-11-21 05:24:14,797 | INFO     | ***************************************
[2025-11-21 00:24:55] 2025-11-21 05:24:14,798 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 00:24:55] 2025-11-21 05:24:14,798 | INFO     | ***************************************
[2025-11-21 00:24:55] 2025-11-21 05:24:14,798 | INFO     | 
[2025-11-21 00:24:55] 2025-11-21 05:24:14,800 | INFO     | architecture information:
[2025-11-21 00:24:55] 2025-11-21 05:24:14,800 | INFO     | executing command: cat /etc/os-release
[2025-11-21 00:24:55] 2025-11-21 05:24:14,814 | INFO     | cat /etc/os-release:
[2025-11-21 00:24:55] NAME="CentOS Linux"
[2025-11-21 00:24:55] VERSION="7 (Core)"
[2025-11-21 00:24:55] ID="centos"
[2025-11-21 00:24:55] ID_LIKE="rhel fedora"
[2025-11-21 00:24:55] VERSION_ID="7"
[2025-11-21 00:24:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 00:24:55] ANSI_COLOR="0;31"
[2025-11-21 00:24:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 00:24:55] HOME_URL="https://www.centos.org/"
[2025-11-21 00:24:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 00:24:55] 
[2025-11-21 00:24:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 00:24:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 00:24:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 00:24:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 00:24:55] 
[2025-11-21 00:24:55] 2025-11-21 05:24:14,814 | INFO     | ***************************************
[2025-11-21 00:24:55] 2025-11-21 05:24:15,318 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 00:24:55] 2025-11-21 05:24:15,334 | INFO     | sufficient remaining disk space (48495591424 B)
[2025-11-21 00:24:55] 2025-11-21 05:24:15,334 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 00:24:55] 2025-11-21 05:24:15,335 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 00:24:55] 2025-11-21 05:24:15,335 | INFO     | update_server=False
[2025-11-21 00:24:55] 2025-11-21 05:24:15,335 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 00:24:55] 2025-11-21 05:24:15,335 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:24:55] 2025-11-21 05:24:15,335 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 00:24:55] 2025-11-21 05:24:15,335 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 00:24:55] 2025-11-21 05:24:15,336 | INFO     | aborting loop
[2025-11-21 00:24:55] 2025-11-21 05:24:15,671 | INFO     | all data control threads have been joined
[2025-11-21 00:24:55] 2025-11-21 05:24:15,825 | INFO     | all job control threads have been joined
[2025-11-21 00:24:55] 2025-11-21 05:24:16,340 | INFO     | [job] retrieve thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:16,341 | INFO     | [job] queue monitor thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:16,341 | INFO     | [job] job monitor thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:16,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 00:24:55] 2025-11-21 05:24:16,457 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:16,572 | INFO     | all payload control threads have been joined
[2025-11-21 00:24:55] 2025-11-21 05:24:16,576 | INFO     | [data] copytool_in thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:16,675 | INFO     | [data] control thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:16,763 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:16,827 | INFO     | [job] control thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:17,255 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:17,470 | INFO     | [payload] validate_post thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:17,554 | INFO     | [job] validate thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:17,577 | INFO     | [payload] control thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:17,740 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:17,847 | INFO     | [payload] failed_post thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:18,377 | INFO     | [data] copytool_out thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:19,342 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 00:24:55] 2025-11-21 05:24:45,089 | INFO     | PID=2677287 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 00:24:55] 2025-11-21 05:24:45,090 | INFO     | .. there are 6 such processes running
[2025-11-21 00:24:55] 2025-11-21 05:24:45,090 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 00:24:55] 2025-11-21 05:24:45,091 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 00:24:55] 2025-11-21 05:24:45,091 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 00:24:55] 2025-11-21 05:24:48,148 | INFO     | [monitor] cgroup control has ended
[2025-11-21 00:24:55] 2025-11-21 05:24:50,075 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140113253906240)>', '<ExcThread(monitor, started 140112612542208)>']
[2025-11-21 00:24:55] 2025-11-21 05:24:50,112 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 00:24:55] 2025-11-21 05:24:50,113 | INFO     | [monitor] control thread has ended
[2025-11-21 00:24:55] 2025-11-21 05:24:55,087 | INFO     | all workflow threads have been joined
[2025-11-21 00:24:55] 2025-11-21 05:24:55,087 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 00:24:55] 2025-11-21 05:24:55,088 | INFO     | traces error code: 0
[2025-11-21 00:24:55] 2025-11-21 05:24:55,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 00:24:55] 2025-11-21 05:24:55,217 [wrapper] ==== pilot stdout END ====
[2025-11-21 00:24:55] 2025-11-21 05:24:55,219 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 00:24:55] 2025-11-21 05:24:55,222 [wrapper] pilotpid: 2677287
[2025-11-21 00:24:55] 2025-11-21 05:24:55,225 [wrapper] Pilot exit status: 0
[2025-11-21 00:24:55] 2025-11-21 05:24:55,233 [wrapper] pandaids: 6892548718
[2025-11-21 00:24:55] 2025-11-21 05:24:55,276 [wrapper] cleanup supervisor_pilot  654330 2677288
[2025-11-21 00:24:55] 2025-11-21 05:24:55,279 [wrapper] Test setup, not cleaning
[2025-11-21 00:24:55] 2025-11-21 05:24:55,282 [wrapper] apfmon messages muted
[2025-11-21 00:24:55] 2025-11-21 05:24:55,285 [wrapper] ==== wrapper stdout END ====
[2025-11-21 00:24:55] 2025-11-21 05:24:55,288 [wrapper] ==== wrapper stderr END ====
[2025-11-21 00:24:55]  *** Error codes and diagnostics ***
[2025-11-21 00:24:55]     "exeErrorCode": 0,
[2025-11-21 00:24:55]     "exeErrorDiag": "",
[2025-11-21 00:24:55]     "pilotErrorCode": 0,
[2025-11-21 00:24:55]     "pilotErrorDiag": "",
[2025-11-21 00:24:55]  *** Listing of results directory ***
[2025-11-21 00:24:55] total 1337140
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 19 03:32 pilot3.tar.gz
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 19 03:45 queuedata.json
[2025-11-21 00:24:55] -rwx------. 1 boincer umatlas     36292 Nov 19 03:45 runpilot2-wrapper.sh
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 00:24:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:00 run_atlas
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:00 job.xml
[2025-11-21 00:24:55] -rw-r--r--. 2 boincer umatlas 408329601 Nov 20 00:00 EVNT.47493027._000340.pool.root.1
[2025-11-21 00:24:55] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 00:00 input.tar.gz
[2025-11-21 00:24:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:00 start_atlas.sh
[2025-11-21 00:24:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:00 shared
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:00 boinc_lockfile
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 00:00 pandaJob.out
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas    989427 Nov 20 00:02 agis_schedconf.cvmfs.json
[2025-11-21 00:24:55] drwx------. 5 boincer umatlas      4096 Nov 20 00:03 pilot3
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas       533 Nov 21 00:16 boinc_task_state.xml
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas      6662 Nov 21 00:22 init_data.xml
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas 929502278 Nov 21 00:23 HITS.47493029._003352.pool.root.1
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas      1057 Nov 21 00:24 memory_monitor_summary.json
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas   1526164 Nov 21 00:24 agis_ddmendpoints.agis.ALL.json
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas   2861856 Nov 21 00:24 log.47493029._003352.job.log.tgz.1
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas        95 Nov 21 00:24 pilot_heartbeat.json
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas      8639 Nov 21 00:24 heartbeat.json
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas        29 Nov 21 00:24 wrapper_checkpoint.txt
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 00:24 boinc_mmap_file
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas      4823 Nov 21 00:24 pilotlog.txt
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas  10877808 Nov 21 00:24 log.47493029._003352.job.log.1
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas       353 Nov 21 00:24 output.list
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas       620 Nov 21 00:24 runtime_log
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas  13762560 Nov 21 00:24 result.tar.gz
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas       660 Nov 21 00:24 YaVMDmF0sf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmY8FKDmsjUAdm.diag
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas      8701 Nov 21 00:24 runtime_log.err
[2025-11-21 00:24:55] -rw-r--r--. 1 boincer umatlas     21881 Nov 21 00:24 stderr.txt
[2025-11-21 00:24:55] HITS file was successfully produced:
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas 929502278 Nov 21 00:23 shared/HITS.pool.root.1
[2025-11-21 00:24:55]  *** Contents of shared directory: ***
[2025-11-21 00:24:55] total 1320520
[2025-11-21 00:24:55] -rw-r--r--. 2 boincer umatlas 408329601 Nov 20 00:00 ATLAS.root_0
[2025-11-21 00:24:55] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 00:00 input.tar.gz
[2025-11-21 00:24:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:00 start_atlas.sh
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas 929502278 Nov 21 00:23 HITS.pool.root.1
[2025-11-21 00:24:55] -rw-------. 1 boincer umatlas  13762560 Nov 21 00:24 result.tar.gz
00:24:57 (2671305): run_atlas exited; CPU time 302055.385751
00:24:57 (2671305): called boinc_finish(0)

</stderr_txt>
]]>

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