Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:40:00 (26553): wrapper (7.7.26015): starting
14:40:00 (26553): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 14:40:00] Arguments: --nthreads 8
[2025-11-19 14:40:00] Threads: 8
[2025-11-19 14:40:00] Checking for CVMFS
[2025-11-19 14:40:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 14:40:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 14:40:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 14:40:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 14:40:01] 2.11.2.0 4362 168581 139368 153055 0 82 10495317 18432001 1885 130560 1 137257063 99.985 7211802 24315 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 14:40:01] CVMFS is ok
[2025-11-19 14:40:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 14:40:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 14:40:01] Further information can be found at the LHC@home message board.
[2025-11-19 14:40:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 14:40:01] Checking for apptainer binary...
[2025-11-19 14:40:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 14:40:01] Running /usr/bin/apptainer --version
[2025-11-19 14:40:01] apptainer version 1.3.2-1.el7
[2025-11-19 14:40:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 14:40:02] c-206-29.aglt2.org
[2025-11-19 14:40:02] apptainer works
[2025-11-19 14:40:02] Set ATHENA_PROC_NUMBER=8
[2025-11-19 14:40:02] Set ATHENA_CORE_NUMBER=8
[2025-11-19 14:40:02] Starting ATLAS job with PandaID=6892523278
[2025-11-19 14:40:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:20:03 (26553): BOINC client no longer exists - exiting
02:20:03 (26553): timer handler: client dead, exiting
02:29:42 (10862): wrapper (7.7.26015): starting
02:29:42 (10862): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 02:29:42] Arguments: --nthreads 8
[2025-11-20 02:29:42] Threads: 8
[2025-11-20 02:29:42] This job has been restarted, cleaning up previous attempt
[2025-11-20 02:29:42] Checking for CVMFS
[2025-11-20 02:29:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 02:29:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 02:29:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 02:29:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 02:29:43] 2.11.2.0 6491 8 27388 153074 3 1 10627528 18432000 1 130560 0 17 100.000 1 n/a http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 02:29:43] CVMFS is ok
[2025-11-20 02:29:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 02:29:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 02:29:43] Further information can be found at the LHC@home message board.
[2025-11-20 02:29:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 02:29:43] Checking for apptainer binary...
[2025-11-20 02:29:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 02:29:43] Running /usr/bin/apptainer --version
[2025-11-20 02:29:43] apptainer version 1.3.2-1.el7
[2025-11-20 02:29:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 02:29:44] c-206-29.aglt2.org
[2025-11-20 02:29:44] apptainer works
[2025-11-20 02:29:44] Set ATHENA_PROC_NUMBER=8
[2025-11-20 02:29:44] Set ATHENA_CORE_NUMBER=8
[2025-11-20 02:29:44] Starting ATLAS job with PandaID=6892523278
[2025-11-20 02:29:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 22:13:00]  *** The last 200 lines of the pilot log: ***
[2025-11-20 22:13:00] 2025-11-21 03:12:17,824 | INFO     | time since job start (70940s) is within the limit (172800.0s)
[2025-11-20 22:13:00] 2025-11-21 03:12:18,605 | INFO     | monitor loop #5049: job 0:6892523278 is in state 'finished'
[2025-11-20 22:13:00] 2025-11-21 03:12:18,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 22:13:00] 2025-11-21 03:12:18,852 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 22:13:00] 2025-11-21 03:12:18,863 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2045.1666666666667
[2025-11-20 22:13:00] 2025-11-21 03:12:18,868 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6892523278/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 22:13:00] 2025-11-21 03:12:18,869 | INFO     | extracted standard info from prmon json
[2025-11-20 22:13:00] 2025-11-21 03:12:18,869 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 22:13:00] 2025-11-21 03:12:18,869 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 22:13:00] 2025-11-21 03:12:18,887 | INFO     | fitting pss+swap vs Time
[2025-11-20 22:13:00] 2025-11-21 03:12:18,888 | INFO     | sum of square deviations: 487771017619.959
[2025-11-20 22:13:00] 2025-11-21 03:12:18,916 | INFO     | sum of deviations: 2392960242847.9707
[2025-11-20 22:13:00] 2025-11-21 03:12:18,916 | INFO     | mean x: 1763659265.7824593
[2025-11-20 22:13:00] 2025-11-21 03:12:18,916 | INFO     | mean y: 2871930.5374032673
[2025-11-20 22:13:00] 2025-11-21 03:12:18,916 | INFO     | intersect: -8649479997.91628
[2025-11-20 22:13:00] 2025-11-21 03:12:18,918 | INFO     | chi2: 4.782858194806473
[2025-11-20 22:13:00] 2025-11-21 03:12:18,919 | INFO     | sum of square deviations: 481507168414.38776
[2025-11-20 22:13:00] 2025-11-21 03:12:18,946 | INFO     | sum of deviations: 2712929492436.0576
[2025-11-20 22:13:00] 2025-11-21 03:12:18,946 | INFO     | mean x: 1763659113.2858377
[2025-11-20 22:13:00] 2025-11-21 03:12:18,946 | INFO     | mean y: 2879713.6191709843
[2025-11-20 22:13:00] 2025-11-21 03:12:18,946 | INFO     | intersect: -9934008326.475489
[2025-11-20 22:13:00] 2025-11-21 03:12:18,947 | INFO     | chi2: 2.4025703955442608
[2025-11-20 22:13:00] 2025-11-21 03:12:18,947 | INFO     | current chi2=2.4025703955442608 (change=49.76705773645721 %)
[2025-11-20 22:13:00] 2025-11-21 03:12:18,948 | INFO     | sum of square deviations: 475297180683.7867
[2025-11-20 22:13:00] 2025-11-21 03:12:18,975 | INFO     | sum of deviations: 2752871682780.7256
[2025-11-20 22:13:00] 2025-11-21 03:12:18,975 | INFO     | mean x: 1763658960.7892454
[2025-11-20 22:13:00] 2025-11-21 03:12:18,975 | INFO     | mean y: 2880692.5585429315
[2025-11-20 22:13:00] 2025-11-21 03:12:18,975 | INFO     | intersect: -10212048005.849396
[2025-11-20 22:13:00] 2025-11-21 03:12:18,976 | INFO     | chi2: 2.286831300292905
[2025-11-20 22:13:00] 2025-11-21 03:12:18,976 | INFO     | current chi2=2.286831300292905 (change=4.817302979592282 %)
[2025-11-20 22:13:00] 2025-11-21 03:12:18,977 | INFO     | right removable region: 1152
[2025-11-20 22:13:00] 2025-11-21 03:12:18,978 | INFO     | sum of square deviations: 481506613314.3876
[2025-11-20 22:13:00] 2025-11-21 03:12:19,006 | INFO     | sum of deviations: 2109339259816.8774
[2025-11-20 22:13:00] 2025-11-21 03:12:19,006 | INFO     | mean x: 1763659418.2858377
[2025-11-20 22:13:00] 2025-11-21 03:12:19,006 | INFO     | mean y: 2878825.882556131
[2025-11-20 22:13:00] 2025-11-21 03:12:19,006 | INFO     | intersect: -7723195851.117013
[2025-11-20 22:13:00] 2025-11-21 03:12:19,007 | INFO     | chi2: 2.832535062759213
[2025-11-20 22:13:00] 2025-11-21 03:12:19,007 | INFO     | current chi2=2.832535062759213 (change=40.7773563967471 %)
[2025-11-20 22:13:00] 2025-11-21 03:12:19,009 | INFO     | sum of square deviations: 475296352916.0874
[2025-11-20 22:13:00] 2025-11-21 03:12:19,036 | INFO     | sum of deviations: 2017263203581.81
[2025-11-20 22:13:00] 2025-11-21 03:12:19,037 | INFO     | mean x: 1763659570.7857761
[2025-11-20 22:13:00] 2025-11-21 03:12:19,037 | INFO     | mean y: 2881086.634865568
[2025-11-20 22:13:00] 2025-11-21 03:12:19,037 | INFO     | intersect: -7482481538.10034
[2025-11-20 22:13:00] 2025-11-21 03:12:19,038 | INFO     | chi2: 2.746328375927547
[2025-11-20 22:13:00] 2025-11-21 03:12:19,038 | INFO     | current chi2=2.746328375927547 (change=3.0434464153707887 %)
[2025-11-20 22:13:00] 2025-11-21 03:12:19,038 | INFO     | left removable region: 20
[2025-11-20 22:13:00] 2025-11-21 03:12:19,039 | INFO     | sum of square deviations: 449796631547.4524
[2025-11-20 22:13:00] 2025-11-21 03:12:19,067 | INFO     | sum of deviations: 2242575713885.038
[2025-11-20 22:13:00] 2025-11-21 03:12:19,067 | INFO     | mean x: 1763659540.295053
[2025-11-20 22:13:00] 2025-11-21 03:12:19,067 | INFO     | mean y: 2893198.631625442
[2025-11-20 22:13:00] 2025-11-21 03:12:19,067 | INFO     | intersect: -8790280816.523441
[2025-11-20 22:13:00] 2025-11-21 03:12:19,068 | INFO     | chi2: 0.18578978110509822
[2025-11-20 22:13:00] 2025-11-21 03:12:19,069 | INFO     | current memory leak: 4.99 B/s (using 1132 data points, chi2=0.19)
[2025-11-20 22:13:00] 2025-11-21 03:12:19,069 | INFO     | could have reported an average CPU frequency of 2570 MHz (42 samples)
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | ..............................
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . Timing measurements:
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . get job = 0 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . initial setup = 2 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . payload setup = 6 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . stage-in = 0 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . payload execution = 70903 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . stage-out = 3 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,070 | INFO     | . log creation = 0 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,071 | INFO     | ..............................
[2025-11-20 22:13:00] 2025-11-21 03:12:19,519 | INFO     | 
[2025-11-20 22:13:00] 2025-11-21 03:12:19,520 | INFO     | job summary report
[2025-11-20 22:13:00] 2025-11-21 03:12:19,520 | INFO     | --------------------------------------------------
[2025-11-20 22:13:00] 2025-11-21 03:12:19,520 | INFO     | PanDA job id: 6892523278
[2025-11-20 22:13:00] 2025-11-21 03:12:19,520 | INFO     | task id: 47493029
[2025-11-20 22:13:00] 2025-11-21 03:12:19,521 | INFO     | errors: (none)
[2025-11-20 22:13:00] 2025-11-21 03:12:19,521 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 22:13:00] 2025-11-21 03:12:19,521 | INFO     | pilot state: finished 
[2025-11-20 22:13:00] 2025-11-21 03:12:19,521 | INFO     | transexitcode: 0
[2025-11-20 22:13:00] 2025-11-21 03:12:19,521 | INFO     | exeerrorcode: 0
[2025-11-20 22:13:00] 2025-11-21 03:12:19,521 | INFO     | exeerrordiag: 
[2025-11-20 22:13:00] 2025-11-21 03:12:19,522 | INFO     | exitcode: 0
[2025-11-20 22:13:00] 2025-11-21 03:12:19,522 | INFO     | exitmsg: OK
[2025-11-20 22:13:00] 2025-11-21 03:12:19,522 | INFO     | cpuconsumptiontime: 549409 s
[2025-11-20 22:13:00] 2025-11-21 03:12:19,522 | INFO     | nevents: 1000
[2025-11-20 22:13:00] 2025-11-21 03:12:19,522 | INFO     | neventsw: 0
[2025-11-20 22:13:00] 2025-11-21 03:12:19,522 | INFO     | pid: 9140
[2025-11-20 22:13:00] 2025-11-21 03:12:19,523 | INFO     | pgrp: 9140
[2025-11-20 22:13:00] 2025-11-21 03:12:19,523 | INFO     | corecount: 8
[2025-11-20 22:13:00] 2025-11-21 03:12:19,523 | INFO     | event service: False
[2025-11-20 22:13:00] 2025-11-21 03:12:19,523 | INFO     | sizes: {0: 2297190, 5: 2297452, 11: 2297508, 70913: 2354202, 70914: 2354201, 70918: 2364847, 70921: 2365031, 70926: 2365277}
[2025-11-20 22:13:00] 2025-11-21 03:12:19,523 | INFO     | --------------------------------------------------
[2025-11-20 22:13:00] 2025-11-21 03:12:19,523 | INFO     | 
[2025-11-20 22:13:00] 2025-11-21 03:12:19,524 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-20 22:13:00] 2025-11-21 03:12:19,542 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,543 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,543 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,543 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,543 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,543 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,543 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,544 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,544 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,544 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,544 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,544 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,545 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,545 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,545 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,545 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,545 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,545 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 22:13:00] 2025-11-21 03:12:19,546 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,546 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 22:13:00] 2025-11-21 03:12:19,546 | INFO     | job 6892523278 has completed (purged errors)
[2025-11-20 22:13:00] 2025-11-21 03:12:19,546 | INFO     | overall cleanup function is called
[2025-11-20 22:13:00] 2025-11-21 03:12:20,561 | INFO     | --- collectZombieJob: --- 10, [9140]
[2025-11-20 22:13:00] 2025-11-21 03:12:20,561 | INFO     | zombie collector waiting for pid 9140
[2025-11-20 22:13:00] 2025-11-21 03:12:20,561 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 22:13:00] 2025-11-21 03:12:20,561 | INFO     | collected zombie processes
[2025-11-20 22:13:00] 2025-11-21 03:12:20,561 | INFO     | will attempt to kill all subprocesses of pid=9140
[2025-11-20 22:13:00] 2025-11-21 03:12:20,690 | INFO     | process IDs to be killed: [9140] (in reverse order)
[2025-11-20 22:13:00] 2025-11-21 03:12:20,734 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 22:13:00] 2025-11-21 03:12:20,735 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 22:13:00] 2025-11-21 03:12:20,739 | INFO     | did not find any defunct processes belonging to 9140
[2025-11-20 22:13:00] 2025-11-21 03:12:20,742 | INFO     | did not find any defunct processes belonging to 9140
[2025-11-20 22:13:00] 2025-11-21 03:12:20,744 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 22:13:00] 2025-11-21 03:12:20,745 | INFO     | ready for new job
[2025-11-20 22:13:00] 2025-11-21 03:12:20,745 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 22:13:00] 2025-11-21 03:12:20,749 | INFO     | ***************************************
[2025-11-20 22:13:00] 2025-11-21 03:12:20,749 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 22:13:00] 2025-11-21 03:12:20,749 | INFO     | ***************************************
[2025-11-20 22:13:00] 2025-11-21 03:12:20,749 | INFO     | 
[2025-11-20 22:13:00] 2025-11-21 03:12:20,750 | INFO     | architecture information:
[2025-11-20 22:13:00] 2025-11-21 03:12:20,750 | INFO     | executing command: cat /etc/os-release
[2025-11-20 22:13:00] 2025-11-21 03:12:20,765 | INFO     | cat /etc/os-release:
[2025-11-20 22:13:00] NAME="CentOS Linux"
[2025-11-20 22:13:00] VERSION="7 (Core)"
[2025-11-20 22:13:00] ID="centos"
[2025-11-20 22:13:00] ID_LIKE="rhel fedora"
[2025-11-20 22:13:00] VERSION_ID="7"
[2025-11-20 22:13:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 22:13:00] ANSI_COLOR="0;31"
[2025-11-20 22:13:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 22:13:00] HOME_URL="https://www.centos.org/"
[2025-11-20 22:13:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 22:13:00] 
[2025-11-20 22:13:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 22:13:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 22:13:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 22:13:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 22:13:00] 
[2025-11-20 22:13:00] 2025-11-21 03:12:20,766 | INFO     | ***************************************
[2025-11-20 22:13:00] 2025-11-21 03:12:21,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-20 22:13:00] 2025-11-21 03:12:21,281 | INFO     | sufficient remaining disk space (24649924608 B)
[2025-11-20 22:13:00] 2025-11-21 03:12:21,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 22:13:00] 2025-11-21 03:12:21,282 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 22:13:00] 2025-11-21 03:12:21,282 | INFO     | update_server=False
[2025-11-20 22:13:00] 2025-11-21 03:12:21,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 22:13:00] 2025-11-21 03:12:21,488 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 22:13:00] 2025-11-21 03:12:22,042 | INFO     | all data control threads have been joined
[2025-11-20 22:13:00] 2025-11-21 03:12:22,075 | INFO     | all job control threads have been joined
[2025-11-20 22:13:00] 2025-11-21 03:12:22,112 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:13:00] 2025-11-21 03:12:22,112 | INFO     | aborting loop
[2025-11-20 22:13:00] 2025-11-21 03:12:22,128 | INFO     | all payload control threads have been joined
[2025-11-20 22:13:00] 2025-11-21 03:12:22,287 | INFO     | [job] retrieve thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:22,396 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:22,443 | INFO     | [data] copytool_in thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:22,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,028 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,028 | INFO     | [job] validate thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,046 | INFO     | [data] control thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,080 | INFO     | [job] control thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,085 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,117 | INFO     | [job] job monitor thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,133 | INFO     | [payload] control thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,462 | INFO     | [payload] validate_post thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,493 | INFO     | [data] copytool_out thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:23,710 | INFO     | [payload] failed_post thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:24,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 22:13:00] 2025-11-21 03:12:24,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 22:13:00] 2025-11-21 03:12:25,177 | INFO     | [job] queue monitor thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:28,568 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 22:13:00] 2025-11-21 03:12:51,036 | INFO     | PID=21986 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 22:13:00] 2025-11-21 03:12:51,036 | INFO     | .. there are 3 such processes running
[2025-11-20 22:13:00] 2025-11-21 03:12:51,037 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 22:13:00] 2025-11-21 03:12:51,037 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 22:13:00] 2025-11-21 03:12:51,037 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 22:13:00] 2025-11-21 03:12:54,726 | INFO     | [monitor] cgroup control has ended
[2025-11-20 22:13:00] 2025-11-21 03:12:55,305 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140661322151744)>', '<ExcThread(monitor, started 140660866782976)>']
[2025-11-20 22:13:00] 2025-11-21 03:12:56,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 22:13:00] 2025-11-21 03:12:56,058 | INFO     | [monitor] control thread has ended
[2025-11-20 22:13:00] 2025-11-21 03:13:00,330 | INFO     | all workflow threads have been joined
[2025-11-20 22:13:00] 2025-11-21 03:13:00,331 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 22:13:00] 2025-11-21 03:13:00,331 | INFO     | traces error code: 0
[2025-11-20 22:13:00] 2025-11-21 03:13:00,331 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 22:13:00] 2025-11-21 03:13:00,423 [wrapper] ==== pilot stdout END ====
[2025-11-20 22:13:00] 2025-11-21 03:13:00,426 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 22:13:00] 2025-11-21 03:13:00,428 [wrapper] pilotpid: 21986
[2025-11-20 22:13:00] 2025-11-21 03:13:00,431 [wrapper] Pilot exit status: 0
[2025-11-20 22:13:00] 2025-11-21 03:13:00,438 [wrapper] pandaids: 6892523278 6892523278
[2025-11-20 22:13:00] 2025-11-21 03:13:00,466 [wrapper] cleanup supervisor_pilot 16806 21988
[2025-11-20 22:13:00] 2025-11-21 03:13:00,469 [wrapper] Test setup, not cleaning
[2025-11-20 22:13:00] 2025-11-21 03:13:00,471 [wrapper] apfmon messages muted
[2025-11-20 22:13:00] 2025-11-21 03:13:00,475 [wrapper] ==== wrapper stdout END ====
[2025-11-20 22:13:00] 2025-11-21 03:13:00,477 [wrapper] ==== wrapper stderr END ====
[2025-11-20 22:13:00]  *** Error codes and diagnostics ***
[2025-11-20 22:13:00]     "exeErrorCode": 0,
[2025-11-20 22:13:00]     "exeErrorDiag": "",
[2025-11-20 22:13:00]     "pilotErrorCode": 0,
[2025-11-20 22:13:00]     "pilotErrorDiag": "",
[2025-11-20 22:13:00]  *** Listing of results directory ***
[2025-11-20 22:13:00] total 1729012
[2025-11-20 22:13:00] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:03 queuedata.json
[2025-11-20 22:13:00] -rwx------ 1 boincer umatlas     36292 Nov 19 02:03 runpilot2-wrapper.sh
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas       100 Nov 19 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 22:13:00] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 14:39 run_atlas
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas       105 Nov 19 14:39 job.xml
[2025-11-20 22:13:00] -rw-r--r-- 3 boincer umatlas 411719535 Nov 19 14:40 EVNT.47493027._000072.pool.root.1
[2025-11-20 22:13:00] -rw-r--r-- 3 boincer umatlas 411719535 Nov 19 14:40 ATLAS.root_0
[2025-11-20 22:13:00] drwxrwx--x 2 boincer umatlas      4096 Nov 19 14:40 shared
[2025-11-20 22:13:00] -rw-r--r-- 2 boincer umatlas    590098 Nov 19 14:40 input.tar.gz
[2025-11-20 22:13:00] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 14:40 start_atlas.sh
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas         0 Nov 19 14:40 boinc_lockfile
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas      2768 Nov 20 02:29 pandaJob.out
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas    989443 Nov 20 02:29 agis_schedconf.cvmfs.json
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas       534 Nov 20 22:02 boinc_task_state.xml
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas 918920999 Nov 20 22:11 HITS.47493029._000671.pool.root.1
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas        96 Nov 20 22:11 pilot_heartbeat.json
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas      1078 Nov 20 22:12 memory_monitor_summary.json
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas   1526164 Nov 20 22:12 agis_ddmendpoints.agis.ALL.json
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas   2317773 Nov 20 22:12 log.47493029._000671.job.log.tgz.1
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas      8646 Nov 20 22:12 heartbeat.json
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas      5954 Nov 20 22:12 init_data.xml
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 22:12 boinc_mmap_file
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas        30 Nov 20 22:12 wrapper_checkpoint.txt
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas      4821 Nov 20 22:13 pilotlog.txt
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas   9794603 Nov 20 22:13 log.47493029._000671.job.log.1
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas       353 Nov 20 22:13 output.list
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas       620 Nov 20 22:13 runtime_log
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas  12134400 Nov 20 22:13 result.tar.gz
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas      8789 Nov 20 22:13 runtime_log.err
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas       793 Nov 20 22:13 JKtNDmMPrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdaGKDm6fxglm.diag
[2025-11-20 22:13:00] -rw-r--r-- 1 boincer umatlas     23544 Nov 20 22:13 stderr.txt
[2025-11-20 22:13:00] HITS file was successfully produced:
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas 918920999 Nov 20 22:11 shared/HITS.pool.root.1
[2025-11-20 22:13:00]  *** Contents of shared directory: ***
[2025-11-20 22:13:00] total 1311908
[2025-11-20 22:13:00] -rw-r--r-- 3 boincer umatlas 411719535 Nov 19 14:40 ATLAS.root_0
[2025-11-20 22:13:00] -rw-r--r-- 2 boincer umatlas    590098 Nov 19 14:40 input.tar.gz
[2025-11-20 22:13:00] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 14:40 start_atlas.sh
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas 918920999 Nov 20 22:11 HITS.pool.root.1
[2025-11-20 22:13:00] -rw------- 1 boincer umatlas  12134400 Nov 20 22:13 result.tar.gz
22:13:02 (10862): run_atlas exited; CPU time 548229.132909
22:13:02 (10862): called boinc_finish(0)

</stderr_txt>
]]>

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