Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
13:39:52 (2922080): wrapper (7.7.26015): starting
13:39:52 (2922080): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 13:39:52] Arguments: --nthreads 12
[2025-11-23 13:39:52] Threads: 12
[2025-11-23 13:39:52] Checking for CVMFS
[2025-11-23 13:39:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 13:39:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 13:39:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 13:39:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 13:39:56] 2.13.0.0 2291514 6722 166552 153210 2 81 4007170 4096000 13933 130560 0 39895219 99.981 897305 593 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-23 13:39:56] CVMFS is ok
[2025-11-23 13:39:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 13:39:56] Checking for apptainer binary...
[2025-11-23 13:39:56] apptainer is not installed, using version from CVMFS
[2025-11-23 13:39:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 13:40:22] epyc7v12
[2025-11-23 13:40:22] apptainer works
[2025-11-23 13:40:22] Set ATHENA_PROC_NUMBER=12
[2025-11-23 13:40:22] Set ATHENA_CORE_NUMBER=12
[2025-11-23 13:40:22] Starting ATLAS job with PandaID=6890934197
[2025-11-23 13:40:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:31:45]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:31:45] 2025-11-23 23:30:29,771 | INFO     | time since job start (35094s) is within the limit (172800.0s)
[2025-11-23 23:31:45] 2025-11-23 23:30:30,469 | INFO     | monitor loop #2214: job 0:6890934197 is in state 'finished'
[2025-11-23 23:31:45] 2025-11-23 23:30:30,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:31:45] 2025-11-23 23:30:31,779 | INFO     | time since job start (35096s) is within the limit (172800.0s)
[2025-11-23 23:31:45] 2025-11-23 23:30:32,979 | INFO     | monitor loop #2215: job 0:6890934197 is in state 'finished'
[2025-11-23 23:31:45] 2025-11-23 23:30:32,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:31:45] 2025-11-23 23:30:33,791 | INFO     | time since job start (35098s) is within the limit (172800.0s)
[2025-11-23 23:31:45] 2025-11-23 23:30:35,491 | INFO     | monitor loop #2216: job 0:6890934197 is in state 'finished'
[2025-11-23 23:31:45] 2025-11-23 23:30:35,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:31:45] 2025-11-23 23:30:35,799 | INFO     | time since job start (35100s) is within the limit (172800.0s)
[2025-11-23 23:31:45] 2025-11-23 23:30:37,807 | INFO     | time since job start (35102s) is within the limit (172800.0s)
[2025-11-23 23:31:45] 2025-11-23 23:30:38,001 | INFO     | monitor loop #2217: job 0:6890934197 is in state 'finished'
[2025-11-23 23:31:45] 2025-11-23 23:30:38,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:31:45] 2025-11-23 23:30:38,975 [wrapper] supervise_pilot (15 min periods counter: 40)
[2025-11-23 23:31:45] 2025-11-23 23:30:39,819 | INFO     | time since job start (35104s) is within the limit (172800.0s)
[2025-11-23 23:31:45] 2025-11-23 23:30:39,896 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 23:31:45] 2025-11-23 23:30:39,968 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2391.6588671875
[2025-11-23 23:31:45] 2025-11-23 23:30:40,028 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/1/PanDA_Pilot-6890934197/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,029 | INFO     | extracted standard info from prmon json
[2025-11-23 23:31:45] 2025-11-23 23:30:40,029 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 23:31:45] 2025-11-23 23:30:40,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 23:31:45] 2025-11-23 23:30:40,052 | INFO     | fitting pss+swap vs Time
[2025-11-23 23:31:45] 2025-11-23 23:30:40,053 | INFO     | sum of square deviations: 55630713539.91464
[2025-11-23 23:31:45] 2025-11-23 23:30:40,073 | INFO     | sum of deviations: -29062534925.085648
[2025-11-23 23:31:45] 2025-11-23 23:30:40,073 | INFO     | mean x: 1763923303.9148936
[2025-11-23 23:31:45] 2025-11-23 23:30:40,073 | INFO     | mean y: 3121459.831560284
[2025-11-23 23:31:45] 2025-11-23 23:30:40,074 | INFO     | intersect: 924628292.3552425
[2025-11-23 23:31:45] 2025-11-23 23:30:40,074 | INFO     | chi2: 56.36917705475573
[2025-11-23 23:31:45] 2025-11-23 23:30:40,075 | INFO     | sum of square deviations: 54164492214.815636
[2025-11-23 23:31:45] 2025-11-23 23:30:40,092 | INFO     | sum of deviations: 183193071950.85236
[2025-11-23 23:31:45] 2025-11-23 23:30:40,092 | INFO     | mean x: 1763923151.4275491
[2025-11-23 23:31:45] 2025-11-23 23:30:40,092 | INFO     | mean y: 3143529.7370304116
[2025-11-23 23:31:45] 2025-11-23 23:30:40,092 | INFO     | intersect: -5962729823.486302
[2025-11-23 23:31:45] 2025-11-23 23:30:40,093 | INFO     | chi2: 52.033558023423275
[2025-11-23 23:31:45] 2025-11-23 23:30:40,093 | INFO     | current chi2=52.033558023423275 (change=7.691471222155568 %)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,093 | INFO     | right removable region: 558
[2025-11-23 23:31:45] 2025-11-23 23:30:40,094 | INFO     | sum of square deviations: 54164005434.81568
[2025-11-23 23:31:45] 2025-11-23 23:30:40,118 | INFO     | sum of deviations: -294429984536.9324
[2025-11-23 23:31:45] 2025-11-23 23:30:40,119 | INFO     | mean x: 1763923456.4275491
[2025-11-23 23:31:45] 2025-11-23 23:30:40,119 | INFO     | mean y: 3149052.3720930233
[2025-11-23 23:31:45] 2025-11-23 23:30:40,119 | INFO     | intersect: 9591656250.668495
[2025-11-23 23:31:45] 2025-11-23 23:30:40,120 | INFO     | chi2: 51.18222713894444
[2025-11-23 23:31:45] 2025-11-23 23:30:40,120 | INFO     | current chi2=51.18222713894444 (change=9.201748520779017 %)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,120 | INFO     | left removable region: 10
[2025-11-23 23:31:45] 2025-11-23 23:30:40,121 | INFO     | sum of square deviations: 51029026006.94886
[2025-11-23 23:31:45] 2025-11-23 23:30:40,137 | INFO     | sum of deviations: -282551081850.8178
[2025-11-23 23:31:45] 2025-11-23 23:30:40,137 | INFO     | mean x: 1763923425.9562044
[2025-11-23 23:31:45] 2025-11-23 23:30:40,137 | INFO     | mean y: 3203212.299270073
[2025-11-23 23:31:45] 2025-11-23 23:30:40,137 | INFO     | intersect: 9770163534.803904
[2025-11-23 23:31:45] 2025-11-23 23:30:40,138 | INFO     | chi2: 41.4793004088911
[2025-11-23 23:31:45] 2025-11-23 23:30:40,138 | INFO     | current memory leak: -5.54 B/s (using 548 data points, chi2=41.48)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | could have reported an average CPU frequency of 2393 MHz (22 samples)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | ..............................
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | . Timing measurements:
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | . get job = 0 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | . initial setup = 8 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | . payload setup = 176 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | . stage-in = 0 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | . payload execution = 34534 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,144 | INFO     | . stage-out = 7 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,145 | INFO     | . log creation = 2 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,145 | INFO     | ..............................
[2025-11-23 23:31:45] 2025-11-23 23:30:40,755 | INFO     | 
[2025-11-23 23:31:45] 2025-11-23 23:30:40,755 | INFO     | job summary report
[2025-11-23 23:31:45] 2025-11-23 23:30:40,755 | INFO     | --------------------------------------------------
[2025-11-23 23:31:45] 2025-11-23 23:30:40,755 | INFO     | PanDA job id: 6890934197
[2025-11-23 23:31:45] 2025-11-23 23:30:40,755 | INFO     | task id: 47483661
[2025-11-23 23:31:45] 2025-11-23 23:30:40,755 | INFO     | errors: (none)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,755 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 23:31:45] 2025-11-23 23:30:40,756 | INFO     | pilot state: finished 
[2025-11-23 23:31:45] 2025-11-23 23:30:40,756 | INFO     | transexitcode: 0
[2025-11-23 23:31:45] 2025-11-23 23:30:40,756 | INFO     | exeerrorcode: 0
[2025-11-23 23:31:45] 2025-11-23 23:30:40,756 | INFO     | exeerrordiag: 
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | exitcode: 0
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | exitmsg: OK
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | cpuconsumptiontime: 260432 s
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | nevents: 1000
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | neventsw: 0
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | pid: 2952289
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | pgrp: 2952289
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | corecount: 12
[2025-11-23 23:31:45] 2025-11-23 23:30:40,763 | INFO     | event service: False
[2025-11-23 23:31:45] 2025-11-23 23:30:40,764 | INFO     | sizes: {0: 2298588, 1: 2298843, 2: 2298843, 12: 2298871, 23: 2298899, 34: 2298927, 45: 2299083, 55: 2299111, 66: 2299139, 77: 2299167, 88: 2299223, 98: 2299531, 10
[2025-11-23 23:31:45] 2025-11-23 23:30:40,764 | INFO     | --------------------------------------------------
[2025-11-23 23:31:45] 2025-11-23 23:30:40,764 | INFO     | 
[2025-11-23 23:31:45] 2025-11-23 23:30:40,764 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/1
[2025-11-23 23:31:45] 2025-11-23 23:30:40,971 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,971 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,972 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 23:31:45] 2025-11-23 23:30:40,973 | INFO     | job 6890934197 has completed (purged errors)
[2025-11-23 23:31:45] 2025-11-23 23:30:40,974 | INFO     | overall cleanup function is called
[2025-11-23 23:31:45] 2025-11-23 23:30:41,667 | INFO     | PID=2929564 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 23:31:45] 2025-11-23 23:30:41,667 | INFO     | .. there are 15 such processes running
[2025-11-23 23:31:45] 2025-11-23 23:30:42,055 | INFO     | --- collectZombieJob: --- 10, [2952289]
[2025-11-23 23:31:45] 2025-11-23 23:30:42,055 | INFO     | zombie collector waiting for pid 2952289
[2025-11-23 23:31:45] 2025-11-23 23:30:42,055 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 23:31:45] 2025-11-23 23:30:42,055 | INFO     | collected zombie processes
[2025-11-23 23:31:45] 2025-11-23 23:30:42,055 | INFO     | will attempt to kill all subprocesses of pid=2952289
[2025-11-23 23:31:45] 2025-11-23 23:30:43,201 | INFO     | process IDs to be killed: [2952289] (in reverse order)
[2025-11-23 23:31:45] 2025-11-23 23:30:49,879 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 23:31:45] 2025-11-23 23:30:49,879 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 23:31:45] 2025-11-23 23:30:49,899 | INFO     | did not find any defunct processes belonging to 2952289
[2025-11-23 23:31:45] 2025-11-23 23:30:49,917 | INFO     | did not find any defunct processes belonging to 2952289
[2025-11-23 23:31:45] 2025-11-23 23:30:49,919 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 23:31:45] 2025-11-23 23:30:49,920 | INFO     | ready for new job
[2025-11-23 23:31:45] 2025-11-23 23:30:49,920 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 23:31:45] 2025-11-23 23:30:49,924 | INFO     | ***************************************
[2025-11-23 23:31:45] 2025-11-23 23:30:49,924 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 23:31:45] 2025-11-23 23:30:49,925 | INFO     | ***************************************
[2025-11-23 23:31:45] 2025-11-23 23:30:49,925 | INFO     | 
[2025-11-23 23:31:45] 2025-11-23 23:30:49,957 | INFO     | architecture information:
[2025-11-23 23:31:45] 2025-11-23 23:30:49,959 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:31:45] 2025-11-23 23:30:50,019 | INFO     | cat /etc/os-release:
[2025-11-23 23:31:45] NAME="CentOS Linux"
[2025-11-23 23:31:45] VERSION="7 (Core)"
[2025-11-23 23:31:45] ID="centos"
[2025-11-23 23:31:45] ID_LIKE="rhel fedora"
[2025-11-23 23:31:45] VERSION_ID="7"
[2025-11-23 23:31:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:31:45] ANSI_COLOR="0;31"
[2025-11-23 23:31:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:31:45] HOME_URL="https://www.centos.org/"
[2025-11-23 23:31:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:31:45] 
[2025-11-23 23:31:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:31:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:31:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:31:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:31:45] 
[2025-11-23 23:31:45] 2025-11-23 23:30:50,019 | INFO     | ***************************************
[2025-11-23 23:31:45] 2025-11-23 23:30:50,523 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/1
[2025-11-23 23:31:45] 2025-11-23 23:30:50,583 | INFO     | sufficient remaining disk space (324630740992 B)
[2025-11-23 23:31:45] 2025-11-23 23:30:50,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:31:45] 2025-11-23 23:30:50,584 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:31:45] 2025-11-23 23:30:50,584 | INFO     | update_server=False
[2025-11-23 23:31:45] 2025-11-23 23:30:50,584 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:31:45] 2025-11-23 23:30:50,933 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:31:45] 2025-11-23 23:30:51,147 | INFO     | all job control threads have been joined
[2025-11-23 23:31:45] 2025-11-23 23:30:51,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:31:45] 2025-11-23 23:30:51,575 | INFO     | aborting loop
[2025-11-23 23:31:45] 2025-11-23 23:30:51,591 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:51,659 | INFO     | all data control threads have been joined
[2025-11-23 23:31:45] 2025-11-23 23:30:51,663 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:51,923 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:51,997 | INFO     | all payload control threads have been joined
[2025-11-23 23:31:45] 2025-11-23 23:30:52,023 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,103 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,155 | INFO     | [job] control thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,167 | INFO     | [job] validate thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,359 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,579 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,663 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,667 | INFO     | [data] control thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,731 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,939 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:52,999 | INFO     | [payload] control thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:53,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:31:45] 2025-11-23 23:30:53,543 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:31:45] 2025-11-23 23:30:54,367 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:30:57,559 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:31:45] 2025-11-23 23:31:14,830 | INFO     | PID=2929564 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 23:31:45] 2025-11-23 23:31:14,830 | INFO     | .. there are 15 such processes running
[2025-11-23 23:31:45] 2025-11-23 23:31:14,830 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:31:45] 2025-11-23 23:31:14,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:31:45] 2025-11-23 23:31:14,830 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:31:45] 2025-11-23 23:31:34,851 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:31:45] 2025-11-23 23:31:35,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140480883042112)>', '<ExcThread(monitor, started 140480427833088)>']
[2025-11-23 23:31:45] 2025-11-23 23:31:35,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:31:45] 2025-11-23 23:31:35,971 | INFO     | [monitor] control thread has ended
[2025-11-23 23:31:45] 2025-11-23 23:31:40,635 | INFO     | all workflow threads have been joined
[2025-11-23 23:31:45] 2025-11-23 23:31:40,635 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:31:45] 2025-11-23 23:31:40,635 | INFO     | traces error code: 0
[2025-11-23 23:31:45] 2025-11-23 23:31:40,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:31:45] 2025-11-23 23:31:41,007 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:31:45] 2025-11-23 23:31:41,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:31:45] 2025-11-23 23:31:41,163 [wrapper] pilotpid: 2929564
[2025-11-23 23:31:45] 2025-11-23 23:31:41,271 [wrapper] Pilot exit status: 0
[2025-11-23 23:31:45] 2025-11-23 23:31:41,699 [wrapper] pandaids: 6890934197
[2025-11-23 23:31:45] 2025-11-23 23:31:42,820 [wrapper] cleanup supervisor_pilot 3979670 2929565
[2025-11-23 23:31:45] 2025-11-23 23:31:42,901 [wrapper] Test setup, not cleaning
[2025-11-23 23:31:45] 2025-11-23 23:31:42,995 [wrapper] apfmon messages muted
[2025-11-23 23:31:45] 2025-11-23 23:31:43,127 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:31:45] 2025-11-23 23:31:43,212 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:31:45]  *** Error codes and diagnostics ***
[2025-11-23 23:31:45]     "exeErrorCode": 0,
[2025-11-23 23:31:45]     "exeErrorDiag": "",
[2025-11-23 23:31:45]     "pilotErrorCode": 0,
[2025-11-23 23:31:45]     "pilotErrorDiag": "",
[2025-11-23 23:31:45]  *** Listing of results directory ***
[2025-11-23 23:31:45] total 1322240
[2025-11-23 23:31:45] -rw-r--r-- 1 boinc boinc    576529 Nov 18 02:22 pilot3.tar.gz
[2025-11-23 23:31:45] -rw-r--r-- 1 boinc boinc      5112 Nov 18 02:56 queuedata.json
[2025-11-23 23:31:45] -rwx------ 1 boinc boinc     36292 Nov 18 02:59 runpilot2-wrapper.sh
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc       100 Nov 23 13:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:31:45] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 13:39 run_atlas
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc       105 Nov 23 13:39 job.xml
[2025-11-23 23:31:45] -rw-r--r-- 2 boinc boinc     15120 Nov 23 13:39 start_atlas.sh
[2025-11-23 23:31:45] drwxrwx--x 2 boinc boinc      4096 Nov 23 13:39 shared
[2025-11-23 23:31:45] -rw-r--r-- 2 boinc boinc    590104 Nov 23 13:39 input.tar.gz
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc      6546 Nov 23 13:39 init_data.xml
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc         0 Nov 23 13:39 boinc_setup_complete
[2025-11-23 23:31:45] -rw-r--r-- 2 boinc boinc 410442917 Nov 23 13:39 EVNT.47483658._000079.pool.root.1
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc         0 Nov 23 13:39 boinc_lockfile
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc      2771 Nov 23 13:40 pandaJob.out
[2025-11-23 23:31:45] -rw------- 1 boinc boinc    989785 Nov 23 13:45 agis_schedconf.cvmfs.json
[2025-11-23 23:31:45] drwx------ 5 boinc boinc      4096 Nov 23 13:45 pilot3
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc       533 Nov 23 22:40 boinc_task_state.xml
[2025-11-23 23:31:45] -rw------- 1 boinc boinc 925802229 Nov 23 23:27 HITS.47483661._000463.pool.root.1
[2025-11-23 23:31:45] -rw------- 1 boinc boinc      1038 Nov 23 23:28 memory_monitor_summary.json
[2025-11-23 23:31:45] -rw------- 1 boinc boinc   1526164 Nov 23 23:28 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:31:45] -rw------- 1 boinc boinc   2266653 Nov 23 23:28 log.47483661._000463.job.log.tgz.1
[2025-11-23 23:31:45] -rw------- 1 boinc boinc        95 Nov 23 23:30 pilot_heartbeat.json
[2025-11-23 23:31:45] -rw------- 1 boinc boinc      8554 Nov 23 23:30 heartbeat.json
[2025-11-23 23:31:45] -rw------- 1 boinc boinc      4848 Nov 23 23:31 pilotlog.txt
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc      8192 Nov 23 23:31 boinc_mmap_file
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc        29 Nov 23 23:31 wrapper_checkpoint.txt
[2025-11-23 23:31:45] -rw------- 1 boinc boinc   4638845 Nov 23 23:31 log.47483661._000463.job.log.1
[2025-11-23 23:31:45] -rw------- 1 boinc boinc       353 Nov 23 23:31 output.list
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc       620 Nov 23 23:31 runtime_log
[2025-11-23 23:31:45] -rw------- 1 boinc boinc   6922240 Nov 23 23:31 result.tar.gz
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc      9008 Nov 23 23:31 runtime_log.err
[2025-11-23 23:31:45] -rw------- 1 boinc boinc       660 Nov 23 23:31 WLjNDmW7Qf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmI0qMDmfw5r7m.diag
[2025-11-23 23:31:45] -rw-rw-r-- 1 boinc boinc     21649 Nov 23 23:31 stderr.txt
[2025-11-23 23:31:45] HITS file was successfully produced:
[2025-11-23 23:31:45] -rw------- 1 boinc boinc 925802229 Nov 23 23:27 shared/HITS.pool.root.1
[2025-11-23 23:31:45]  *** Contents of shared directory: ***
[2025-11-23 23:31:45] total 1312292
[2025-11-23 23:31:45] -rw-r--r-- 2 boinc boinc     15120 Nov 23 13:39 start_atlas.sh
[2025-11-23 23:31:45] -rw-r--r-- 2 boinc boinc    590104 Nov 23 13:39 input.tar.gz
[2025-11-23 23:31:45] -rw-r--r-- 2 boinc boinc 410442917 Nov 23 13:39 ATLAS.root_0
[2025-11-23 23:31:45] -rw------- 1 boinc boinc 925802229 Nov 23 23:27 HITS.pool.root.1
[2025-11-23 23:31:45] -rw------- 1 boinc boinc   6922240 Nov 23 23:31 result.tar.gz
23:31:47 (2922080): run_atlas exited; CPU time 261551.266794
23:31:47 (2922080): called boinc_finish(0)

</stderr_txt>
]]>

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