Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:24:03 (27211): wrapper (7.7.26015): starting
23:24:03 (27211): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 23:24:03] Arguments: --nthreads 8
[2025-11-22 23:24:03] Threads: 8
[2025-11-22 23:24:03] Checking for CVMFS
[2025-11-22 23:24:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 23:24:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 23:24:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 23:24:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 23:24:05] 2.11.2.0 20854 167011 136584 153187 0 117 18457527 25165824 4477 130560 2 56590961 99.883 27806140 2540 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 23:24:05] CVMFS is ok
[2025-11-22 23:24:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 23:24:06] Checking for apptainer binary...
[2025-11-22 23:24:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 23:24:06] Running /usr/bin/apptainer --version
[2025-11-22 23:24:06] apptainer version 1.3.2-1.el7
[2025-11-22 23:24:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 23:24:19] cg-vwn379.simple-grid.lan
[2025-11-22 23:24:19] apptainer works
[2025-11-22 23:24:19] Set ATHENA_PROC_NUMBER=8
[2025-11-22 23:24:19] Set ATHENA_CORE_NUMBER=8
[2025-11-22 23:24:19] Starting ATLAS job with PandaID=6892524056
[2025-11-22 23:24:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 02:04:13]  *** The last 200 lines of the pilot log: ***
[2025-11-24 02:04:13] 2025-11-24 01:02:57,059 | INFO     | time since job start (95680s) is within the limit (172800.0s)
[2025-11-24 02:04:13] 2025-11-24 01:02:57,770 | INFO     | monitor loop #6392: job 0:6892524056 is in state 'finished'
[2025-11-24 02:04:13] 2025-11-24 01:02:57,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:04:13] 2025-11-24 01:02:59,072 | INFO     | time since job start (95682s) is within the limit (172800.0s)
[2025-11-24 02:04:13] 2025-11-24 01:03:00,282 | INFO     | monitor loop #6393: job 0:6892524056 is in state 'finished'
[2025-11-24 02:04:13] 2025-11-24 01:03:00,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:04:13] 2025-11-24 01:03:01,081 | INFO     | time since job start (95684s) is within the limit (172800.0s)
[2025-11-24 02:04:13] 2025-11-24 01:03:02,788 | INFO     | monitor loop #6394: job 0:6892524056 is in state 'finished'
[2025-11-24 02:04:13] 2025-11-24 01:03:02,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:04:13] 2025-11-24 01:03:03,087 | INFO     | time since job start (95686s) is within the limit (172800.0s)
[2025-11-24 02:04:13] 2025-11-24 01:03:05,095 | INFO     | time since job start (95688s) is within the limit (172800.0s)
[2025-11-24 02:04:13] 2025-11-24 01:03:05,292 | INFO     | monitor loop #6395: job 0:6892524056 is in state 'finished'
[2025-11-24 02:04:13] 2025-11-24 01:03:05,293 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 02:04:13] 2025-11-24 01:03:07,102 | INFO     | time since job start (95690s) is within the limit (172800.0s)
[2025-11-24 02:04:13] 2025-11-24 01:03:07,137 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 02:04:13] 2025-11-24 01:03:07,138 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-24 02:04:13] 2025-11-24 01:03:07,140 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6892524056/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 02:04:13] 2025-11-24 01:03:07,141 | INFO     | extracted standard info from prmon json
[2025-11-24 02:04:13] 2025-11-24 01:03:07,141 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 02:04:13] 2025-11-24 01:03:07,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 02:04:13] 2025-11-24 01:03:07,185 | INFO     | fitting pss+swap vs Time
[2025-11-24 02:04:13] 2025-11-24 01:03:07,188 | INFO     | sum of square deviations: 1186282829729.1936
[2025-11-24 02:04:13] 2025-11-24 01:03:07,278 | INFO     | sum of deviations: 2753159898581.9497
[2025-11-24 02:04:13] 2025-11-24 01:03:07,279 | INFO     | mean x: 1763898367.91688
[2025-11-24 02:04:13] 2025-11-24 01:03:07,279 | INFO     | mean y: 2867311.645780051
[2025-11-24 02:04:13] 2025-11-24 01:03:07,279 | INFO     | intersect: -4090839627.391267
[2025-11-24 02:04:13] 2025-11-24 01:03:07,284 | INFO     | chi2: 15.93520565109952
[2025-11-24 02:04:13] 2025-11-24 01:03:07,287 | INFO     | sum of square deviations: 1174942437144.1257
[2025-11-24 02:04:13] 2025-11-24 01:03:07,376 | INFO     | sum of deviations: 3274659114833.8643
[2025-11-24 02:04:13] 2025-11-24 01:03:07,376 | INFO     | mean x: 1763898215.421424
[2025-11-24 02:04:13] 2025-11-24 01:03:07,377 | INFO     | mean y: 2874323.6029506093
[2025-11-24 02:04:13] 2025-11-24 01:03:07,377 | INFO     | intersect: -4913251936.002406
[2025-11-24 02:04:13] 2025-11-24 01:03:07,379 | INFO     | chi2: 12.701617313829987
[2025-11-24 02:04:13] 2025-11-24 01:03:07,379 | INFO     | current chi2=12.701617313829987 (change=20.292102957870632 %)
[2025-11-24 02:04:13] 2025-11-24 01:03:07,379 | INFO     | right removable region: 1558
[2025-11-24 02:04:13] 2025-11-24 01:03:07,384 | INFO     | sum of square deviations: 1174941085384.125
[2025-11-24 02:04:13] 2025-11-24 01:03:07,460 | INFO     | sum of deviations: 2277358367345.109
[2025-11-24 02:04:13] 2025-11-24 01:03:07,460 | INFO     | mean x: 1763898520.421424
[2025-11-24 02:04:13] 2025-11-24 01:03:07,460 | INFO     | mean y: 2873706.7152020526
[2025-11-24 02:04:13] 2025-11-24 01:03:07,461 | INFO     | intersect: -3416045849.8480062
[2025-11-24 02:04:13] 2025-11-24 01:03:07,462 | INFO     | chi2: 13.514249069636932
[2025-11-24 02:04:13] 2025-11-24 01:03:07,463 | INFO     | current chi2=13.514249069636932 (change=15.19250290500985 %)
[2025-11-24 02:04:13] 2025-11-24 01:03:07,463 | INFO     | left removable region: 10
[2025-11-24 02:04:13] 2025-11-24 01:03:07,465 | INFO     | sum of square deviations: 1150246545711.606
[2025-11-24 02:04:13] 2025-11-24 01:03:07,539 | INFO     | sum of deviations: 2800993812836.989
[2025-11-24 02:04:13] 2025-11-24 01:03:07,539 | INFO     | mean x: 1763898489.9263566
[2025-11-24 02:04:13] 2025-11-24 01:03:07,539 | INFO     | mean y: 2883859.850775194
[2025-11-24 02:04:13] 2025-11-24 01:03:07,539 | INFO     | intersect: -4292428979.971458
[2025-11-24 02:04:13] 2025-11-24 01:03:07,541 | INFO     | chi2: 9.434782634363332
[2025-11-24 02:04:13] 2025-11-24 01:03:07,542 | INFO     | current memory leak: 2.44 B/s (using 1548 data points, chi2=9.43)
[2025-11-24 02:04:13] 2025-11-24 01:03:07,544 | INFO     | could have reported an average CPU frequency of 1999 MHz (53 samples)
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | ..............................
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | . Timing measurements:
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | . get job = 0 s
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | . initial setup = 13 s
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | . payload setup = 16 s
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | . stage-in = 0 s
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | . payload execution = 95410 s
[2025-11-24 02:04:13] 2025-11-24 01:03:07,545 | INFO     | . stage-out = 6 s
[2025-11-24 02:04:13] 2025-11-24 01:03:07,546 | INFO     | . log creation = 2 s
[2025-11-24 02:04:13] 2025-11-24 01:03:07,546 | INFO     | ..............................
[2025-11-24 02:04:13] 2025-11-24 01:03:08,026 | INFO     | 
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | job summary report
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | --------------------------------------------------
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | PanDA job id: 6892524056
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | task id: 47493029
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | errors: (none)
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | pilot state: finished 
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | transexitcode: 0
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | exeerrorcode: 0
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | exeerrordiag: 
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | exitcode: 0
[2025-11-24 02:04:13] 2025-11-24 01:03:08,027 | INFO     | exitmsg: OK
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | cpuconsumptiontime: 345778 s
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | nevents: 1000
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | neventsw: 0
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | pid: 5267
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | pgrp: 5267
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | corecount: 8
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | event service: False
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | sizes: {0: 2298565, 1: 2298820, 12: 2298820, 23: 2298848, 34: 2298876, 44: 2298904, 55: 2299060, 66: 2299088, 77: 2299116, 88: 2299172, 98: 2299200, 103: 2299770, 
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | --------------------------------------------------
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | 
[2025-11-24 02:04:13] 2025-11-24 01:03:08,028 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-11-24 02:04:13] 2025-11-24 01:03:08,287 | INFO     | PID=31063 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 02:04:13] 2025-11-24 01:03:08,287 | INFO     | .. there are 9 such processes running
[2025-11-24 02:04:13] 2025-11-24 01:03:08,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,598 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,599 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,599 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 02:04:13] 2025-11-24 01:03:08,599 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,599 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 02:04:13] 2025-11-24 01:03:08,599 | INFO     | job 6892524056 has completed (purged errors)
[2025-11-24 02:04:13] 2025-11-24 01:03:08,599 | INFO     | overall cleanup function is called
[2025-11-24 02:04:13] 2025-11-24 01:03:09,625 | INFO     | --- collectZombieJob: --- 10, [5267]
[2025-11-24 02:04:13] 2025-11-24 01:03:09,626 | INFO     | zombie collector waiting for pid 5267
[2025-11-24 02:04:13] 2025-11-24 01:03:09,626 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 02:04:13] 2025-11-24 01:03:09,626 | INFO     | collected zombie processes
[2025-11-24 02:04:13] 2025-11-24 01:03:09,626 | INFO     | will attempt to kill all subprocesses of pid=5267
[2025-11-24 02:04:13] 2025-11-24 01:03:09,745 | INFO     | process IDs to be killed: [5267] (in reverse order)
[2025-11-24 02:04:13] 2025-11-24 01:03:10,181 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 02:04:13] 2025-11-24 01:03:10,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 02:04:13] 2025-11-24 01:03:10,185 | INFO     | did not find any defunct processes belonging to 5267
[2025-11-24 02:04:13] 2025-11-24 01:03:10,194 | INFO     | did not find any defunct processes belonging to 5267
[2025-11-24 02:04:13] 2025-11-24 01:03:10,259 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 02:04:13] 2025-11-24 01:03:10,259 | INFO     | ready for new job
[2025-11-24 02:04:13] 2025-11-24 01:03:10,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 02:04:13] 2025-11-24 01:03:10,266 | INFO     | ***************************************
[2025-11-24 02:04:13] 2025-11-24 01:03:10,266 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 02:04:13] 2025-11-24 01:03:10,267 | INFO     | ***************************************
[2025-11-24 02:04:13] 2025-11-24 01:03:10,267 | INFO     | 
[2025-11-24 02:04:13] 2025-11-24 01:03:10,267 | INFO     | pilot is running in a VM
[2025-11-24 02:04:13] 2025-11-24 01:03:10,268 | INFO     | architecture information:
[2025-11-24 02:04:13] 2025-11-24 01:03:10,272 | INFO     | executing command: cat /etc/os-release
[2025-11-24 02:04:13] 2025-11-24 01:03:10,381 | INFO     | cat /etc/os-release:
[2025-11-24 02:04:13] NAME="CentOS Linux"
[2025-11-24 02:04:13] VERSION="7 (Core)"
[2025-11-24 02:04:13] ID="centos"
[2025-11-24 02:04:13] ID_LIKE="rhel fedora"
[2025-11-24 02:04:13] VERSION_ID="7"
[2025-11-24 02:04:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 02:04:13] ANSI_COLOR="0;31"
[2025-11-24 02:04:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 02:04:13] HOME_URL="https://www.centos.org/"
[2025-11-24 02:04:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 02:04:13] 
[2025-11-24 02:04:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 02:04:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 02:04:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 02:04:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 02:04:13] 
[2025-11-24 02:04:13] 2025-11-24 01:03:10,382 | INFO     | ***************************************
[2025-11-24 02:04:13] 2025-11-24 01:03:10,886 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-11-24 02:04:13] 2025-11-24 01:03:11,061 | INFO     | sufficient remaining disk space (494924726272 B)
[2025-11-24 02:04:13] 2025-11-24 01:03:11,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 02:04:13] 2025-11-24 01:03:11,062 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 02:04:13] 2025-11-24 01:03:11,062 | INFO     | update_server=False
[2025-11-24 02:04:13] 2025-11-24 01:03:11,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 02:04:13] 2025-11-24 01:03:11,064 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 02:04:13] 2025-11-24 01:03:11,176 | INFO     | all job control threads have been joined
[2025-11-24 02:04:13] 2025-11-24 01:03:11,236 | INFO     | all data control threads have been joined
[2025-11-24 02:04:13] 2025-11-24 01:03:11,323 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:04:13] 2025-11-24 01:03:11,324 | INFO     | aborting loop
[2025-11-24 02:04:13] 2025-11-24 01:03:11,414 | INFO     | all payload control threads have been joined
[2025-11-24 02:04:13] 2025-11-24 01:03:12,069 | INFO     | [job] retrieve thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,176 | INFO     | [payload] failed_post thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,182 | INFO     | [job] control thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,248 | INFO     | [data] control thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,290 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,330 | INFO     | [job] job monitor thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,334 | INFO     | [data] copytool_in thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 02:04:13] 2025-11-24 01:03:12,420 | INFO     | [payload] control thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,436 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 02:04:13] 2025-11-24 01:03:12,731 | INFO     | [job] validate thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:12,826 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:13,018 | INFO     | [payload] validate_post thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:13,072 | INFO     | [data] copytool_out thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:13,424 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:13,693 | INFO     | [job] queue monitor thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:16,346 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 02:04:13] 2025-11-24 01:03:40,463 | INFO     | PID=31063 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-24 02:04:13] 2025-11-24 01:03:40,463 | INFO     | .. there are 9 such processes running
[2025-11-24 02:04:13] 2025-11-24 01:03:40,464 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 02:04:13] 2025-11-24 01:03:40,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 02:04:13] 2025-11-24 01:03:40,464 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 02:04:13] 2025-11-24 01:04:04,025 | INFO     | [monitor] cgroup control has ended
[2025-11-24 02:04:13] 2025-11-24 01:04:04,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140102236186432)>', '<ExcThread(monitor, started 140101917054720)>']
[2025-11-24 02:04:13] 2025-11-24 01:04:04,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 02:04:13] 2025-11-24 01:04:04,608 | INFO     | [monitor] control thread has ended
[2025-11-24 02:04:13] 2025-11-24 01:04:09,569 | INFO     | all workflow threads have been joined
[2025-11-24 02:04:13] 2025-11-24 01:04:09,570 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 02:04:13] 2025-11-24 01:04:09,570 | INFO     | traces error code: 0
[2025-11-24 02:04:13] 2025-11-24 01:04:09,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 02:04:13] 2025-11-24 01:04:10,155 [wrapper] ==== pilot stdout END ====
[2025-11-24 02:04:13] 2025-11-24 01:04:10,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 02:04:13] 2025-11-24 01:04:10,334 [wrapper] pilotpid: 31063
[2025-11-24 02:04:13] 2025-11-24 01:04:10,450 [wrapper] Pilot exit status: 0
[2025-11-24 02:04:13] 2025-11-24 01:04:10,839 [wrapper] pandaids: 6892524056
[2025-11-24 02:04:13] 2025-11-24 01:04:11,517 [wrapper] cleanup supervisor_pilot 15177 31064
[2025-11-24 02:04:13] 2025-11-24 01:04:11,596 [wrapper] Test setup, not cleaning
[2025-11-24 02:04:13] 2025-11-24 01:04:11,639 [wrapper] apfmon messages muted
[2025-11-24 02:04:13] 2025-11-24 01:04:11,718 [wrapper] ==== wrapper stdout END ====
[2025-11-24 02:04:13] 2025-11-24 01:04:11,822 [wrapper] ==== wrapper stderr END ====
[2025-11-24 02:04:13]  *** Error codes and diagnostics ***
[2025-11-24 02:04:13]     "exeErrorCode": 0,
[2025-11-24 02:04:13]     "exeErrorDiag": "",
[2025-11-24 02:04:13]     "pilotErrorCode": 0,
[2025-11-24 02:04:13]     "pilotErrorDiag": "",
[2025-11-24 02:04:13]  *** Listing of results directory ***
[2025-11-24 02:04:13] total 1346452
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc      5112 Nov 19 08:07 queuedata.json
[2025-11-24 02:04:13] -rwx------. 1 boinc boinc     36292 Nov 19 08:08 runpilot2-wrapper.sh
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc       100 Nov 22 23:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 02:04:13] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 23:24 run_atlas
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc       105 Nov 22 23:24 job.xml
[2025-11-24 02:04:13] -rw-r--r--. 2 boinc boinc 409616547 Nov 22 23:24 EVNT.47493027._000086.pool.root.1
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc      6391 Nov 22 23:24 init_data.xml
[2025-11-24 02:04:13] -rw-r--r--. 2 boinc boinc     15120 Nov 22 23:24 start_atlas.sh
[2025-11-24 02:04:13] drwxrwx--x. 2 boinc boinc        68 Nov 22 23:24 shared
[2025-11-24 02:04:13] -rw-r--r--. 2 boinc boinc    590098 Nov 22 23:24 input.tar.gz
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc         0 Nov 22 23:24 boinc_lockfile
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc      2771 Nov 22 23:24 pandaJob.out
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc    989784 Nov 22 23:28 agis_schedconf.cvmfs.json
[2025-11-24 02:04:13] drwx------. 5 boinc boinc      4096 Nov 22 23:28 pilot3
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc       533 Nov 24 01:36 boinc_task_state.xml
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc 934617152 Nov 24 02:00 HITS.47493029._000816.pool.root.1
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc      1030 Nov 24 02:01 memory_monitor_summary.json
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc   1526164 Nov 24 02:01 agis_ddmendpoints.agis.ALL.json
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc   2605251 Nov 24 02:01 log.47493029._000816.job.log.tgz.1
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc        95 Nov 24 02:02 pilot_heartbeat.json
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc      7947 Nov 24 02:03 heartbeat.json
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc        29 Nov 24 02:03 wrapper_checkpoint.txt
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc      8192 Nov 24 02:03 boinc_mmap_file
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc      4884 Nov 24 02:04 pilotlog.txt
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc  12709474 Nov 24 02:04 log.47493029._000816.job.log.1
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc       353 Nov 24 02:04 output.list
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc       620 Nov 24 02:04 runtime_log
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc  15329280 Nov 24 02:04 result.tar.gz
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc      8703 Nov 24 02:04 runtime_log.err
[2025-11-24 02:04:13] -rw-------. 1 boinc boinc       662 Nov 24 02:04 5fANDmJUrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmstFKDmg7kd5m.diag
[2025-11-24 02:04:13] -rw-r--r--. 1 boinc boinc     21494 Nov 24 02:04 stderr.txt
[2025-11-24 02:04:14] HITS file was successfully produced:
[2025-11-24 02:04:14] -rw-------. 1 boinc boinc 934617152 Nov 24 02:00 shared/HITS.pool.root.1
[2025-11-24 02:04:14]  *** Contents of shared directory: ***
[2025-11-24 02:04:14] total 1328304
[2025-11-24 02:04:14] -rw-r--r--. 2 boinc boinc 409616547 Nov 22 23:24 ATLAS.root_0
[2025-11-24 02:04:14] -rw-r--r--. 2 boinc boinc     15120 Nov 22 23:24 start_atlas.sh
[2025-11-24 02:04:14] -rw-r--r--. 2 boinc boinc    590098 Nov 22 23:24 input.tar.gz
[2025-11-24 02:04:14] -rw-------. 1 boinc boinc 934617152 Nov 24 02:00 HITS.pool.root.1
[2025-11-24 02:04:14] -rw-------. 1 boinc boinc  15329280 Nov 24 02:04 result.tar.gz
02:04:15 (27211): run_atlas exited; CPU time 346297.801373
02:04:15 (27211): called boinc_finish(0)

</stderr_txt>
]]>

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