Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
09:18:38 (1499245): wrapper (7.7.26015): starting
09:18:38 (1499245): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 09:18:38] Arguments: --nthreads 12
[2025-11-21 09:18:38] Threads: 12
[2025-11-21 09:18:38] Checking for CVMFS
[2025-11-21 09:18:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 09:18:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 09:18:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 09:18:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 09:18:42] 2.13.0.0 2291514 3581 158720 153115 0 81 3600056 4096001 14619 130560 0 22712948 99.967 778278 565 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-21 09:18:42] CVMFS is ok
[2025-11-21 09:18:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 09:18:42] Checking for apptainer binary...
[2025-11-21 09:18:42] apptainer is not installed, using version from CVMFS
[2025-11-21 09:18:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 09:19:18] epyc7v12
[2025-11-21 09:19:18] apptainer works
[2025-11-21 09:19:18] Set ATHENA_PROC_NUMBER=12
[2025-11-21 09:19:18] Set ATHENA_CORE_NUMBER=12
[2025-11-21 09:19:18] Starting ATLAS job with PandaID=6892534798
[2025-11-21 09:19:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 19:32:15]  *** The last 200 lines of the pilot log: ***
[2025-11-21 19:32:15] 2025-11-21 19:30:46,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:32:15] 2025-11-21 19:30:48,595 | INFO     | time since job start (36342s) is within the limit (172800.0s)
[2025-11-21 19:32:15] 2025-11-21 19:30:49,251 | INFO     | monitor loop #2282: job 0:6892534798 is in state 'finished'
[2025-11-21 19:32:15] 2025-11-21 19:30:49,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:32:15] 2025-11-21 19:30:51,286 | INFO     | PID=1508309 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:32:15] 2025-11-21 19:30:51,286 | INFO     | .. there are 16 such processes running
[2025-11-21 19:32:15] 2025-11-21 19:30:51,773 | INFO     | monitor loop #2283: job 0:6892534798 is in state 'finished'
[2025-11-21 19:32:15] 2025-11-21 19:30:51,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:32:15] 2025-11-21 19:30:52,299 | INFO     | time since job start (36346s) is within the limit (172800.0s)
[2025-11-21 19:32:15] 2025-11-21 19:30:54,279 | INFO     | monitor loop #2284: job 0:6892534798 is in state 'finished'
[2025-11-21 19:32:15] 2025-11-21 19:30:54,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:32:15] 2025-11-21 19:30:54,311 | INFO     | time since job start (36348s) is within the limit (172800.0s)
[2025-11-21 19:32:15] 2025-11-21 19:30:56,323 | INFO     | time since job start (36350s) is within the limit (172800.0s)
[2025-11-21 19:32:15] 2025-11-21 19:30:56,791 | INFO     | monitor loop #2285: job 0:6892534798 is in state 'finished'
[2025-11-21 19:32:15] 2025-11-21 19:30:56,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 19:32:15] 2025-11-21 19:30:58,331 | INFO     | time since job start (36352s) is within the limit (172800.0s)
[2025-11-21 19:32:15] 2025-11-21 19:30:59,068 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 19:32:15] 2025-11-21 19:30:59,116 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2394.161804687499
[2025-11-21 19:32:15] 2025-11-21 19:30:59,176 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/0/PanDA_Pilot-6892534798/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 19:32:15] 2025-11-21 19:30:59,177 | INFO     | extracted standard info from prmon json
[2025-11-21 19:32:15] 2025-11-21 19:30:59,177 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 19:32:15] 2025-11-21 19:30:59,177 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 19:32:15] 2025-11-21 19:30:59,200 | INFO     | fitting pss+swap vs Time
[2025-11-21 19:32:15] 2025-11-21 19:30:59,201 | INFO     | sum of square deviations: 62079021378.331535
[2025-11-21 19:32:15] 2025-11-21 19:30:59,218 | INFO     | sum of deviations: 439475783785.57025
[2025-11-21 19:32:15] 2025-11-21 19:30:59,223 | INFO     | mean x: 1763735442.3350427
[2025-11-21 19:32:15] 2025-11-21 19:30:59,223 | INFO     | mean y: 3046457.4307692307
[2025-11-21 19:32:15] 2025-11-21 19:30:59,223 | INFO     | intersect: -12482959260.776878
[2025-11-21 19:32:15] 2025-11-21 19:30:59,224 | INFO     | chi2: 70.5846500271607
[2025-11-21 19:32:15] 2025-11-21 19:30:59,225 | INFO     | sum of square deviations: 60501053239.34315
[2025-11-21 19:32:15] 2025-11-21 19:30:59,242 | INFO     | sum of deviations: 653976978819.2725
[2025-11-21 19:32:15] 2025-11-21 19:30:59,242 | INFO     | mean x: 1763735289.8465517
[2025-11-21 19:32:15] 2025-11-21 19:30:59,242 | INFO     | mean y: 3067182.4862068966
[2025-11-21 19:32:15] 2025-11-21 19:30:59,242 | INFO     | intersect: -19061762511.10186
[2025-11-21 19:32:15] 2025-11-21 19:30:59,251 | INFO     | chi2: 66.15868983440791
[2025-11-21 19:32:15] 2025-11-21 19:30:59,251 | INFO     | current chi2=66.15868983440791 (change=6.270428756180989 %)
[2025-11-21 19:32:15] 2025-11-21 19:30:59,251 | INFO     | right removable region: 579
[2025-11-21 19:32:15] 2025-11-21 19:30:59,252 | INFO     | sum of square deviations: 60500576829.34316
[2025-11-21 19:32:15] 2025-11-21 19:30:59,269 | INFO     | sum of deviations: 168301062934.8926
[2025-11-21 19:32:15] 2025-11-21 19:30:59,269 | INFO     | mean x: 1763735594.8465517
[2025-11-21 19:32:15] 2025-11-21 19:30:59,269 | INFO     | mean y: 3072659.122413793
[2025-11-21 19:32:15] 2025-11-21 19:30:59,269 | INFO     | intersect: -4903303294.714957
[2025-11-21 19:32:15] 2025-11-21 19:30:59,270 | INFO     | chi2: 64.89016111817575
[2025-11-21 19:32:15] 2025-11-21 19:30:59,270 | INFO     | current chi2=64.89016111817575 (change=8.067602384928923 %)
[2025-11-21 19:32:15] 2025-11-21 19:30:59,270 | INFO     | left removable region: 10
[2025-11-21 19:32:15] 2025-11-21 19:30:59,271 | INFO     | sum of square deviations: 57123202985.01179
[2025-11-21 19:32:15] 2025-11-21 19:30:59,285 | INFO     | sum of deviations: 170679340567.60892
[2025-11-21 19:32:15] 2025-11-21 19:30:59,285 | INFO     | mean x: 1763735564.3725834
[2025-11-21 19:32:15] 2025-11-21 19:30:59,285 | INFO     | mean y: 3124343.898066784
[2025-11-21 19:32:15] 2025-11-21 19:30:59,285 | INFO     | intersect: -5266769627.939234
[2025-11-21 19:32:15] 2025-11-21 19:30:59,286 | INFO     | chi2: 54.416008172582934
[2025-11-21 19:32:15] 2025-11-21 19:30:59,286 | INFO     | current memory leak: 2.99 B/s (using 569 data points, chi2=54.42)
[2025-11-21 19:32:15] 2025-11-21 19:30:59,300 | INFO     | could have reported an average CPU frequency of 2393 MHz (22 samples)
[2025-11-21 19:32:15] 2025-11-21 19:30:59,300 | INFO     | ..............................
[2025-11-21 19:32:15] 2025-11-21 19:30:59,300 | INFO     | . Timing measurements:
[2025-11-21 19:32:15] 2025-11-21 19:30:59,300 | INFO     | . get job = 0 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,300 | INFO     | . initial setup = 12 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,301 | INFO     | . payload setup = 117 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,301 | INFO     | . stage-in = 0 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,301 | INFO     | . payload execution = 35802 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,301 | INFO     | . stage-out = 9 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,301 | INFO     | . log creation = 3 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,301 | INFO     | ..............................
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | 
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | job summary report
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | --------------------------------------------------
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | PanDA job id: 6892534798
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | task id: 47493029
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | errors: (none)
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 19:32:15] 2025-11-21 19:30:59,583 | INFO     | pilot state: finished 
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | transexitcode: 0
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | exeerrorcode: 0
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | exeerrordiag: 
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | exitcode: 0
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | exitmsg: OK
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | cpuconsumptiontime: 261922 s
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | nevents: 1000
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | neventsw: 0
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | pid: 1516347
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | pgrp: 1516347
[2025-11-21 19:32:15] 2025-11-21 19:30:59,584 | INFO     | corecount: 12
[2025-11-21 19:32:15] 2025-11-21 19:30:59,585 | INFO     | event service: False
[2025-11-21 19:32:15] 2025-11-21 19:30:59,585 | INFO     | sizes: {0: 2298592, 1: 2298847, 2: 2298847, 13: 2298875, 23: 2298931, 34: 2298959, 45: 2299115, 56: 2299143, 66: 2299171, 77: 2299199, 88: 2299255, 99: 2299563, 11
[2025-11-21 19:32:15] 2025-11-21 19:30:59,585 | INFO     | --------------------------------------------------
[2025-11-21 19:32:15] 2025-11-21 19:30:59,585 | INFO     | 
[2025-11-21 19:32:15] 2025-11-21 19:30:59,585 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/0
[2025-11-21 19:32:15] 2025-11-21 19:31:00,351 | INFO     | time since job start (36354s) is within the limit (172800.0s)
[2025-11-21 19:32:15] 2025-11-21 19:31:00,795 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,795 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,796 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | job 6892534798 has completed (purged errors)
[2025-11-21 19:32:15] 2025-11-21 19:31:00,797 | INFO     | overall cleanup function is called
[2025-11-21 19:32:15] 2025-11-21 19:31:01,851 | INFO     | --- collectZombieJob: --- 10, [1516347]
[2025-11-21 19:32:15] 2025-11-21 19:31:01,851 | INFO     | zombie collector waiting for pid 1516347
[2025-11-21 19:32:15] 2025-11-21 19:31:01,851 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 19:32:15] 2025-11-21 19:31:01,851 | INFO     | collected zombie processes
[2025-11-21 19:32:15] 2025-11-21 19:31:01,851 | INFO     | will attempt to kill all subprocesses of pid=1516347
[2025-11-21 19:32:15] 2025-11-21 19:31:03,051 | INFO     | process IDs to be killed: [1516347] (in reverse order)
[2025-11-21 19:32:15] 2025-11-21 19:31:14,042 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 19:32:15] 2025-11-21 19:31:14,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 19:32:15] 2025-11-21 19:31:14,081 | INFO     | did not find any defunct processes belonging to 1516347
[2025-11-21 19:32:15] 2025-11-21 19:31:14,123 | INFO     | did not find any defunct processes belonging to 1516347
[2025-11-21 19:32:15] 2025-11-21 19:31:14,211 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 19:32:15] 2025-11-21 19:31:14,211 | INFO     | ready for new job
[2025-11-21 19:32:15] 2025-11-21 19:31:14,211 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 19:32:15] 2025-11-21 19:31:14,220 | INFO     | ***************************************
[2025-11-21 19:32:15] 2025-11-21 19:31:14,220 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 19:32:15] 2025-11-21 19:31:14,220 | INFO     | ***************************************
[2025-11-21 19:32:15] 2025-11-21 19:31:14,220 | INFO     | 
[2025-11-21 19:32:15] 2025-11-21 19:31:14,265 | INFO     | architecture information:
[2025-11-21 19:32:15] 2025-11-21 19:31:14,327 | INFO     | executing command: cat /etc/os-release
[2025-11-21 19:32:15] 2025-11-21 19:31:14,832 | INFO     | cat /etc/os-release:
[2025-11-21 19:32:15] NAME="CentOS Linux"
[2025-11-21 19:32:15] VERSION="7 (Core)"
[2025-11-21 19:32:15] ID="centos"
[2025-11-21 19:32:15] ID_LIKE="rhel fedora"
[2025-11-21 19:32:15] VERSION_ID="7"
[2025-11-21 19:32:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 19:32:15] ANSI_COLOR="0;31"
[2025-11-21 19:32:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 19:32:15] HOME_URL="https://www.centos.org/"
[2025-11-21 19:32:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 19:32:15] 
[2025-11-21 19:32:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 19:32:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 19:32:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 19:32:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 19:32:15] 
[2025-11-21 19:32:15] 2025-11-21 19:31:14,832 | INFO     | ***************************************
[2025-11-21 19:32:15] 2025-11-21 19:31:15,339 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/0
[2025-11-21 19:32:15] 2025-11-21 19:31:15,873 | INFO     | sufficient remaining disk space (327983038464 B)
[2025-11-21 19:32:15] 2025-11-21 19:31:15,873 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 19:32:15] 2025-11-21 19:31:15,873 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 19:32:15] 2025-11-21 19:31:15,873 | INFO     | update_server=False
[2025-11-21 19:32:15] 2025-11-21 19:31:15,873 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 19:32:15] 2025-11-21 19:31:15,874 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:32:15] 2025-11-21 19:31:15,874 | INFO     | aborting loop
[2025-11-21 19:32:15] 2025-11-21 19:31:15,874 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 19:32:15] 2025-11-21 19:31:16,102 | INFO     | all job control threads have been joined
[2025-11-21 19:32:15] 2025-11-21 19:31:16,247 | INFO     | all data control threads have been joined
[2025-11-21 19:32:15] 2025-11-21 19:31:16,519 | INFO     | all payload control threads have been joined
[2025-11-21 19:32:15] 2025-11-21 19:31:16,675 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 19:32:15] 2025-11-21 19:31:16,883 | INFO     | [job] retrieve thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:16,883 | INFO     | [job] job monitor thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:16,931 | INFO     | [payload] failed_post thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:16,987 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:17,107 | INFO     | [job] control thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:17,251 | INFO     | [data] control thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:17,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 19:32:15] 2025-11-21 19:31:17,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:17,527 | INFO     | [payload] control thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:17,679 | INFO     | [job] queue monitor thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:17,799 | INFO     | [job] validate thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:17,887 | INFO     | [payload] validate_post thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:18,151 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:18,155 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:18,183 | INFO     | [data] copytool_in thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:19,275 | INFO     | [data] copytool_out thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:19,887 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 19:32:15] 2025-11-21 19:31:34,170 | INFO     | PID=1508309 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 19:32:15] 2025-11-21 19:31:34,170 | INFO     | .. there are 16 such processes running
[2025-11-21 19:32:15] 2025-11-21 19:31:34,170 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 19:32:15] 2025-11-21 19:31:34,170 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 19:32:15] 2025-11-21 19:31:34,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 19:32:15] 2025-11-21 19:32:06,883 | INFO     | [monitor] cgroup control has ended
[2025-11-21 19:32:15] 2025-11-21 19:32:07,379 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848368666432)>', '<ExcThread(monitor, started 139847926789888)>']
[2025-11-21 19:32:15] 2025-11-21 19:32:08,371 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 19:32:15] 2025-11-21 19:32:08,371 | INFO     | [monitor] control thread has ended
[2025-11-21 19:32:15] 2025-11-21 19:32:12,407 | INFO     | all workflow threads have been joined
[2025-11-21 19:32:15] 2025-11-21 19:32:12,407 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 19:32:15] 2025-11-21 19:32:12,407 | INFO     | traces error code: 0
[2025-11-21 19:32:15] 2025-11-21 19:32:12,407 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 19:32:15] 2025-11-21 19:32:12,787 [wrapper] ==== pilot stdout END ====
[2025-11-21 19:32:15] 2025-11-21 19:32:12,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 19:32:15] 2025-11-21 19:32:12,935 [wrapper] pilotpid: 1508309
[2025-11-21 19:32:15] 2025-11-21 19:32:13,091 [wrapper] Pilot exit status: 0
[2025-11-21 19:32:15] 2025-11-21 19:32:13,523 [wrapper] pandaids: 6892534798
[2025-11-21 19:32:15] 2025-11-21 19:32:13,768 [wrapper] cleanup supervisor_pilot 2567735 1508310
[2025-11-21 19:32:15] 2025-11-21 19:32:13,811 [wrapper] Test setup, not cleaning
[2025-11-21 19:32:15] 2025-11-21 19:32:13,825 [wrapper] apfmon messages muted
[2025-11-21 19:32:15] 2025-11-21 19:32:13,856 [wrapper] ==== wrapper stdout END ====
[2025-11-21 19:32:15] 2025-11-21 19:32:13,890 [wrapper] ==== wrapper stderr END ====
[2025-11-21 19:32:15]  *** Error codes and diagnostics ***
[2025-11-21 19:32:15]     "exeErrorCode": 0,
[2025-11-21 19:32:15]     "exeErrorDiag": "",
[2025-11-21 19:32:15]     "pilotErrorCode": 0,
[2025-11-21 19:32:15]     "pilotErrorDiag": "",
[2025-11-21 19:32:15]  *** Listing of results directory ***
[2025-11-21 19:32:15] total 1321548
[2025-11-21 19:32:15] -rw-r--r-- 1 boinc boinc      5112 Nov 19 07:27 queuedata.json
[2025-11-21 19:32:15] -rwx------ 1 boinc boinc     36292 Nov 19 07:27 runpilot2-wrapper.sh
[2025-11-21 19:32:15] -rw-r--r-- 1 boinc boinc    576529 Nov 19 07:27 pilot3.tar.gz
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc       100 Nov 21 09:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 19:32:15] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 09:18 run_atlas
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc       105 Nov 21 09:18 job.xml
[2025-11-21 19:32:15] -rw-r--r-- 2 boinc boinc     15120 Nov 21 09:18 start_atlas.sh
[2025-11-21 19:32:15] drwxrwx--x 2 boinc boinc      4096 Nov 21 09:18 shared
[2025-11-21 19:32:15] -rw-r--r-- 2 boinc boinc    590089 Nov 21 09:18 input.tar.gz
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc      6544 Nov 21 09:18 init_data.xml
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc         0 Nov 21 09:18 boinc_setup_complete
[2025-11-21 19:32:15] -rw-r--r-- 2 boinc boinc 411193326 Nov 21 09:18 EVNT.47493027._000178.pool.root.1
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc         0 Nov 21 09:18 boinc_lockfile
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc      2773 Nov 21 09:19 pandaJob.out
[2025-11-21 19:32:15] -rw------- 1 boinc boinc    989817 Nov 21 09:24 agis_schedconf.cvmfs.json
[2025-11-21 19:32:15] drwx------ 5 boinc boinc      4096 Nov 21 09:25 pilot3
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc       533 Nov 21 18:38 boinc_task_state.xml
[2025-11-21 19:32:15] -rw------- 1 boinc boinc 924117605 Nov 21 19:26 HITS.47493029._001735.pool.root.1
[2025-11-21 19:32:15] -rw------- 1 boinc boinc      1038 Nov 21 19:28 memory_monitor_summary.json
[2025-11-21 19:32:15] -rw------- 1 boinc boinc   1526164 Nov 21 19:28 agis_ddmendpoints.agis.ALL.json
[2025-11-21 19:32:15] -rw------- 1 boinc boinc   2261958 Nov 21 19:28 log.47493029._001735.job.log.tgz.1
[2025-11-21 19:32:15] -rw------- 1 boinc boinc      8573 Nov 21 19:30 heartbeat.json
[2025-11-21 19:32:15] -rw------- 1 boinc boinc        95 Nov 21 19:30 pilot_heartbeat.json
[2025-11-21 19:32:15] -rw------- 1 boinc boinc      4848 Nov 21 19:32 pilotlog.txt
[2025-11-21 19:32:15] -rw------- 1 boinc boinc   4754202 Nov 21 19:32 log.47493029._001735.job.log.1
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc        29 Nov 21 19:32 wrapper_checkpoint.txt
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc      8192 Nov 21 19:32 boinc_mmap_file
[2025-11-21 19:32:15] -rw------- 1 boinc boinc       353 Nov 21 19:32 output.list
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc       620 Nov 21 19:32 runtime_log
[2025-11-21 19:32:15] -rw------- 1 boinc boinc   7034880 Nov 21 19:32 result.tar.gz
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc      9008 Nov 21 19:32 runtime_log.err
[2025-11-21 19:32:15] -rw------- 1 boinc boinc       660 Nov 21 19:32 RrWKDmhmrf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXpGKDmlvlwZm.diag
[2025-11-21 19:32:15] -rw-rw-r-- 1 boinc boinc     21689 Nov 21 19:32 stderr.txt
[2025-11-21 19:32:15] HITS file was successfully produced:
[2025-11-21 19:32:15] -rw------- 1 boinc boinc 924117605 Nov 21 19:26 shared/HITS.pool.root.1
[2025-11-21 19:32:15]  *** Contents of shared directory: ***
[2025-11-21 19:32:15] total 1311492
[2025-11-21 19:32:15] -rw-r--r-- 2 boinc boinc     15120 Nov 21 09:18 start_atlas.sh
[2025-11-21 19:32:15] -rw-r--r-- 2 boinc boinc    590089 Nov 21 09:18 input.tar.gz
[2025-11-21 19:32:15] -rw-r--r-- 2 boinc boinc 411193326 Nov 21 09:18 ATLAS.root_0
[2025-11-21 19:32:15] -rw------- 1 boinc boinc 924117605 Nov 21 19:26 HITS.pool.root.1
[2025-11-21 19:32:15] -rw------- 1 boinc boinc   7034880 Nov 21 19:32 result.tar.gz
19:32:17 (1499245): run_atlas exited; CPU time 263099.044062
19:32:17 (1499245): called boinc_finish(0)

</stderr_txt>
]]>

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