Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:24:47 (19112): wrapper (7.7.26015): starting
14:24:47 (19112): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 14:24:47] Arguments: --nthreads 8
[2025-11-19 14:24:47] Threads: 8
[2025-11-19 14:24:47] Checking for CVMFS
[2025-11-19 14:24:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 14:24:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 14:24:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 14:24:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 14:24:47] 2.11.2.0 4697 108001 130768 153055 1 81 14966680 18432001 1885 130560 0 75848529 99.972 4650316 33931 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 14:24:47] CVMFS is ok
[2025-11-19 14:24:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 14:24:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 14:24:47] Further information can be found at the LHC@home message board.
[2025-11-19 14:24:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 14:24:47] Checking for apptainer binary...
[2025-11-19 14:24:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 14:24:47] Running /usr/bin/apptainer --version
[2025-11-19 14:24:47] apptainer version 1.3.2-1.el7
[2025-11-19 14:24:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 14:24:48] c-206-21.aglt2.org
[2025-11-19 14:24:48] apptainer works
[2025-11-19 14:24:48] Set ATHENA_PROC_NUMBER=8
[2025-11-19 14:24:48] Set ATHENA_CORE_NUMBER=8
[2025-11-19 14:24:48] Starting ATLAS job with PandaID=6892521700
[2025-11-19 14:24:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:11:00 (10229): wrapper (7.7.26015): starting
08:11:00 (10229): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 08:11:00] Arguments: --nthreads 8
[2025-11-20 08:11:00] Threads: 8
[2025-11-20 08:11:00] This job has been restarted, cleaning up previous attempt
[2025-11-20 08:11:00] Checking for CVMFS
[2025-11-20 08:11:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 08:11:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 08:11:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 08:11:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 08:11:01] 2.11.2.0 4697 109067 126360 153082 3 56 15146320 18432001 1 130560 0 76622864 99.972 4684608 33934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 08:11:01] CVMFS is ok
[2025-11-20 08:11:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 08:11:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 08:11:01] Further information can be found at the LHC@home message board.
[2025-11-20 08:11:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 08:11:01] Checking for apptainer binary...
[2025-11-20 08:11:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 08:11:01] Running /usr/bin/apptainer --version
[2025-11-20 08:11:01] apptainer version 1.3.2-1.el7
[2025-11-20 08:11:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 08:11:02] c-206-21.aglt2.org
[2025-11-20 08:11:02] apptainer works
[2025-11-20 08:11:02] Set ATHENA_PROC_NUMBER=8
[2025-11-20 08:11:02] Set ATHENA_CORE_NUMBER=8
[2025-11-20 08:11:02] Starting ATLAS job with PandaID=6892521700
[2025-11-20 08:11:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 04:00:23]  *** The last 200 lines of the pilot log: ***
[2025-11-21 04:00:23] 2025-11-21 08:59:49,311 | INFO     | .. there are 3 such processes running
[2025-11-21 04:00:23] 2025-11-21 08:59:50,311 | INFO     | time since job start (71315s) is within the limit (172800.0s)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,447 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 04:00:23] 2025-11-21 08:59:50,451 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2444.6666666666665
[2025-11-21 04:00:23] 2025-11-21 08:59:50,454 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6892521700/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,454 | INFO     | extracted standard info from prmon json
[2025-11-21 04:00:23] 2025-11-21 08:59:50,454 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 04:00:23] 2025-11-21 08:59:50,454 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 04:00:23] 2025-11-21 08:59:50,469 | INFO     | fitting pss+swap vs Time
[2025-11-21 04:00:23] 2025-11-21 08:59:50,470 | INFO     | sum of square deviations: 495359813917.51746
[2025-11-21 04:00:23] 2025-11-21 08:59:50,495 | INFO     | sum of deviations: 2528205093731.532
[2025-11-21 04:00:23] 2025-11-21 08:59:50,495 | INFO     | mean x: 1763679926.756202
[2025-11-21 04:00:23] 2025-11-21 08:59:50,495 | INFO     | mean y: 2870346.236954662
[2025-11-21 04:00:23] 2025-11-21 08:59:50,495 | INFO     | intersect: -8998555383.625635
[2025-11-21 04:00:23] 2025-11-21 08:59:50,496 | INFO     | chi2: 5.099254173859831
[2025-11-21 04:00:23] 2025-11-21 08:59:50,498 | INFO     | sum of square deviations: 489031016029.6462
[2025-11-21 04:00:23] 2025-11-21 08:59:50,521 | INFO     | sum of deviations: 2859165597323.006
[2025-11-21 04:00:23] 2025-11-21 08:59:50,522 | INFO     | mean x: 1763679774.2594502
[2025-11-21 04:00:23] 2025-11-21 08:59:50,522 | INFO     | mean y: 2878314.9768041237
[2025-11-21 04:00:23] 2025-11-21 08:59:50,522 | INFO     | intersect: -10308640525.274687
[2025-11-21 04:00:23] 2025-11-21 08:59:50,523 | INFO     | chi2: 2.625831603059737
[2025-11-21 04:00:23] 2025-11-21 08:59:50,524 | INFO     | current chi2=2.625831603059737 (change=48.50557525607437 %)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,525 | INFO     | sum of square deviations: 482756358691.7495
[2025-11-21 04:00:23] 2025-11-21 08:59:50,559 | INFO     | sum of deviations: 2918083065405.0996
[2025-11-21 04:00:23] 2025-11-21 08:59:50,559 | INFO     | mean x: 1763679621.7627265
[2025-11-21 04:00:23] 2025-11-21 08:59:50,559 | INFO     | mean y: 2879743.094909405
[2025-11-21 04:00:23] 2025-11-21 08:59:50,559 | INFO     | intersect: -10657909171.2404
[2025-11-21 04:00:23] 2025-11-21 08:59:50,560 | INFO     | chi2: 2.391344183299801
[2025-11-21 04:00:23] 2025-11-21 08:59:50,561 | INFO     | current chi2=2.391344183299801 (change=8.930025043749987 %)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,561 | INFO     | right removable region: 1158
[2025-11-21 04:00:23] 2025-11-21 08:59:50,562 | INFO     | sum of square deviations: 489030547977.1639
[2025-11-21 04:00:23] 2025-11-21 08:59:50,586 | INFO     | sum of deviations: 2242982965938.17
[2025-11-21 04:00:23] 2025-11-21 08:59:50,586 | INFO     | mean x: 1763680079.2585912
[2025-11-21 04:00:23] 2025-11-21 08:59:50,586 | INFO     | mean y: 2877209.45790378
[2025-11-21 04:00:23] 2025-11-21 08:59:50,586 | INFO     | intersect: -8086401449.114217
[2025-11-21 04:00:23] 2025-11-21 08:59:50,587 | INFO     | chi2: 3.153736555522941
[2025-11-21 04:00:23] 2025-11-21 08:59:50,587 | INFO     | current chi2=3.153736555522941 (change=38.15298378947542 %)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,588 | INFO     | sum of square deviations: 482755564473.8378
[2025-11-21 04:00:23] 2025-11-21 08:59:50,612 | INFO     | sum of deviations: 2146618772193.8137
[2025-11-21 04:00:23] 2025-11-21 08:59:50,613 | INFO     | mean x: 1763680231.7592752
[2025-11-21 04:00:23] 2025-11-21 08:59:50,613 | INFO     | mean y: 2879551.157031924
[2025-11-21 04:00:23] 2025-11-21 08:59:50,613 | INFO     | intersect: -7839493219.352523
[2025-11-21 04:00:23] 2025-11-21 08:59:50,614 | INFO     | chi2: 3.060562921375166
[2025-11-21 04:00:23] 2025-11-21 08:59:50,614 | INFO     | current chi2=3.060562921375166 (change=2.954388627820094 %)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,614 | INFO     | left removable region: 20
[2025-11-21 04:00:23] 2025-11-21 08:59:50,615 | INFO     | sum of square deviations: 456987381526.7908
[2025-11-21 04:00:23] 2025-11-21 08:59:50,638 | INFO     | sum of deviations: 2380979761379.512
[2025-11-21 04:00:23] 2025-11-21 08:59:50,638 | INFO     | mean x: 1763680201.2671354
[2025-11-21 04:00:23] 2025-11-21 08:59:50,638 | INFO     | mean y: 2892777.1660808437
[2025-11-21 04:00:23] 2025-11-21 08:59:50,638 | INFO     | intersect: -9186172467.3337
[2025-11-21 04:00:23] 2025-11-21 08:59:50,639 | INFO     | chi2: 0.2609717456862241
[2025-11-21 04:00:23] 2025-11-21 08:59:50,639 | INFO     | current memory leak: 5.21 B/s (using 1138 data points, chi2=0.26)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,640 | INFO     | could have reported an average CPU frequency of 2587 MHz (42 samples)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,640 | INFO     | ..............................
[2025-11-21 04:00:23] 2025-11-21 08:59:50,640 | INFO     | . Timing measurements:
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | . get job = 0 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | . initial setup = 2 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | . payload setup = 6 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | . stage-in = 0 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | . payload execution = 71275 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | . stage-out = 4 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | . log creation = 0 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,641 | INFO     | ..............................
[2025-11-21 04:00:23] 2025-11-21 08:59:50,735 | INFO     | 
[2025-11-21 04:00:23] 2025-11-21 08:59:50,735 | INFO     | job summary report
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | --------------------------------------------------
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | PanDA job id: 6892521700
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | task id: 47493029
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | errors: (none)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | pilot state: finished 
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | transexitcode: 0
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | exeerrorcode: 0
[2025-11-21 04:00:23] 2025-11-21 08:59:50,736 | INFO     | exeerrordiag: 
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | exitcode: 0
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | exitmsg: OK
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | cpuconsumptiontime: 550415 s
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | nevents: 1000
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | neventsw: 0
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | pid: 8329
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | pgrp: 8329
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | corecount: 8
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | event service: False
[2025-11-21 04:00:23] 2025-11-21 08:59:50,737 | INFO     | sizes: {0: 2298788, 4: 2299050, 11: 2299078, 71286: 2355916, 71291: 2364910, 71293: 2364966, 71300: 2365340}
[2025-11-21 04:00:23] 2025-11-21 08:59:50,738 | INFO     | --------------------------------------------------
[2025-11-21 04:00:23] 2025-11-21 08:59:50,738 | INFO     | 
[2025-11-21 04:00:23] 2025-11-21 08:59:50,738 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 04:00:23] 2025-11-21 08:59:50,755 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,755 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,755 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,756 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 04:00:23] 2025-11-21 08:59:50,757 | INFO     | job 6892521700 has completed (purged errors)
[2025-11-21 04:00:23] 2025-11-21 08:59:50,758 | INFO     | overall cleanup function is called
[2025-11-21 04:00:23] 2025-11-21 08:59:51,769 | INFO     | --- collectZombieJob: --- 10, [8329]
[2025-11-21 04:00:23] 2025-11-21 08:59:51,770 | INFO     | zombie collector waiting for pid 8329
[2025-11-21 04:00:23] 2025-11-21 08:59:51,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 04:00:23] 2025-11-21 08:59:51,776 | INFO     | collected zombie processes
[2025-11-21 04:00:23] 2025-11-21 08:59:51,777 | INFO     | will attempt to kill all subprocesses of pid=8329
[2025-11-21 04:00:23] 2025-11-21 08:59:51,945 | INFO     | process IDs to be killed: [8329] (in reverse order)
[2025-11-21 04:00:23] 2025-11-21 08:59:51,999 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 04:00:23] 2025-11-21 08:59:51,999 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 04:00:23] 2025-11-21 08:59:52,002 | INFO     | did not find any defunct processes belonging to 8329
[2025-11-21 04:00:23] 2025-11-21 08:59:52,004 | INFO     | did not find any defunct processes belonging to 8329
[2025-11-21 04:00:23] 2025-11-21 08:59:52,006 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 04:00:23] 2025-11-21 08:59:52,006 | INFO     | ready for new job
[2025-11-21 04:00:23] 2025-11-21 08:59:52,006 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 04:00:23] 2025-11-21 08:59:52,009 | INFO     | ***************************************
[2025-11-21 04:00:23] 2025-11-21 08:59:52,010 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 04:00:23] 2025-11-21 08:59:52,010 | INFO     | ***************************************
[2025-11-21 04:00:23] 2025-11-21 08:59:52,010 | INFO     | 
[2025-11-21 04:00:23] 2025-11-21 08:59:52,011 | INFO     | architecture information:
[2025-11-21 04:00:23] 2025-11-21 08:59:52,011 | INFO     | executing command: cat /etc/os-release
[2025-11-21 04:00:23] 2025-11-21 08:59:52,024 | INFO     | cat /etc/os-release:
[2025-11-21 04:00:23] NAME="CentOS Linux"
[2025-11-21 04:00:23] VERSION="7 (Core)"
[2025-11-21 04:00:23] ID="centos"
[2025-11-21 04:00:23] ID_LIKE="rhel fedora"
[2025-11-21 04:00:23] VERSION_ID="7"
[2025-11-21 04:00:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 04:00:23] ANSI_COLOR="0;31"
[2025-11-21 04:00:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 04:00:23] HOME_URL="https://www.centos.org/"
[2025-11-21 04:00:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 04:00:23] 
[2025-11-21 04:00:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 04:00:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 04:00:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 04:00:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 04:00:23] 
[2025-11-21 04:00:23] 2025-11-21 08:59:52,025 | INFO     | ***************************************
[2025-11-21 04:00:23] 2025-11-21 08:59:52,528 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 04:00:23] 2025-11-21 08:59:52,552 | INFO     | sufficient remaining disk space (25627197440 B)
[2025-11-21 04:00:23] 2025-11-21 08:59:52,552 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 04:00:23] 2025-11-21 08:59:52,552 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 04:00:23] 2025-11-21 08:59:52,553 | INFO     | update_server=False
[2025-11-21 04:00:23] 2025-11-21 08:59:52,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 04:00:23] 2025-11-21 08:59:52,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 04:00:23] 2025-11-21 08:59:52,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 04:00:23] 2025-11-21 08:59:52,554 | INFO     | aborting loop
[2025-11-21 04:00:23] 2025-11-21 08:59:52,615 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 04:00:23] 2025-11-21 08:59:52,715 | INFO     | all data control threads have been joined
[2025-11-21 04:00:23] 2025-11-21 08:59:52,931 | INFO     | all payload control threads have been joined
[2025-11-21 04:00:23] 2025-11-21 08:59:53,412 | INFO     | all job control threads have been joined
[2025-11-21 04:00:23] 2025-11-21 08:59:53,559 | INFO     | [job] retrieve thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:53,559 | INFO     | [job] queue monitor thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:53,560 | INFO     | [job] job monitor thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:53,719 | INFO     | [data] control thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:53,826 | INFO     | [payload] failed_post thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:53,918 | INFO     | [payload] validate_post thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:53,936 | INFO     | [payload] control thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,147 | INFO     | [job] validate thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,164 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,173 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,203 | INFO     | [data] copytool_in thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,211 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,327 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,418 | INFO     | [job] control thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,621 | INFO     | [data] copytool_out thread has finished
[2025-11-21 04:00:23] 2025-11-21 08:59:54,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 04:00:23] 2025-11-21 08:59:58,877 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 04:00:23] 2025-11-21 09:00:13,168 | INFO     | [monitor] cgroup control has ended
[2025-11-21 04:00:23] 2025-11-21 09:00:14,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139652892956480)>', '<ExcThread(monitor, started 139651935368960)>']
[2025-11-21 04:00:23] 2025-11-21 09:00:19,857 | INFO     | all workflow threads have been joined
[2025-11-21 04:00:23] 2025-11-21 09:00:19,857 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 04:00:23] 2025-11-21 09:00:19,858 | INFO     | traces error code: 0
[2025-11-21 04:00:23] 2025-11-21 09:00:19,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 04:00:23] 2025-11-21 09:00:22,324 | INFO     | 71319s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 04:00:23] 2025-11-21 09:00:23,540 | INFO     | PID=21388 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 04:00:23] 2025-11-21 09:00:23,545 | INFO     | .. there are 3 such processes running
[2025-11-21 04:00:23] 2025-11-21 09:00:23,545 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 04:00:23] 2025-11-21 09:00:23,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 04:00:23] 2025-11-21 09:00:23,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 04:00:23] 2025-11-21 09:00:23,546 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 04:00:23] 2025-11-21 09:00:23,546 | INFO     | [monitor] control thread has ended
[2025-11-21 04:00:23] 2025-11-21 09:00:23,662 [wrapper] ==== pilot stdout END ====
[2025-11-21 04:00:23] 2025-11-21 09:00:23,664 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 04:00:23] 2025-11-21 09:00:23,666 [wrapper] pilotpid: 21388
[2025-11-21 04:00:23] 2025-11-21 09:00:23,668 [wrapper] Pilot exit status: 0
[2025-11-21 04:00:23] 2025-11-21 09:00:23,677 [wrapper] pandaids: 6892521700 6892521700
[2025-11-21 04:00:23] 2025-11-21 09:00:23,708 [wrapper] cleanup supervisor_pilot 12139 21390
[2025-11-21 04:00:23] 2025-11-21 09:00:23,710 [wrapper] Test setup, not cleaning
[2025-11-21 04:00:23] 2025-11-21 09:00:23,713 [wrapper] apfmon messages muted
[2025-11-21 04:00:23] 2025-11-21 09:00:23,715 [wrapper] ==== wrapper stdout END ====
[2025-11-21 04:00:23] 2025-11-21 09:00:23,717 [wrapper] ==== wrapper stderr END ====
[2025-11-21 04:00:23]  *** Error codes and diagnostics ***
[2025-11-21 04:00:23]     "exeErrorCode": 0,
[2025-11-21 04:00:23]     "exeErrorDiag": "",
[2025-11-21 04:00:23]     "pilotErrorCode": 0,
[2025-11-21 04:00:23]     "pilotErrorDiag": "",
[2025-11-21 04:00:23]  *** Listing of results directory ***
[2025-11-21 04:00:23] total 1729320
[2025-11-21 04:00:23] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas    576529 Nov 19 02:00 pilot3.tar.gz
[2025-11-21 04:00:23] -rwx------ 1 boincer umatlas     36292 Nov 19 02:02 runpilot2-wrapper.sh
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas      5112 Nov 19 02:02 queuedata.json
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas       100 Nov 19 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 04:00:23] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 14:24 run_atlas
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas       105 Nov 19 14:24 job.xml
[2025-11-21 04:00:23] -rw-r--r-- 3 boincer umatlas 412096686 Nov 19 14:24 EVNT.47493027._000003.pool.root.1
[2025-11-21 04:00:23] -rw-r--r-- 3 boincer umatlas 412096686 Nov 19 14:24 ATLAS.root_0
[2025-11-21 04:00:23] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 14:24 start_atlas.sh
[2025-11-21 04:00:23] drwxrwx--x 2 boincer umatlas      4096 Nov 19 14:24 shared
[2025-11-21 04:00:23] -rw-r--r-- 2 boincer umatlas    590093 Nov 19 14:24 input.tar.gz
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas         0 Nov 19 14:24 boinc_lockfile
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas      2769 Nov 20 08:11 pandaJob.out
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas    989448 Nov 20 08:11 agis_schedconf.cvmfs.json
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas       535 Nov 21 03:51 boinc_task_state.xml
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas      5955 Nov 21 03:58 init_data.xml
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas 918360590 Nov 21 03:59 HITS.47493029._000027.pool.root.1
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas      1067 Nov 21 03:59 memory_monitor_summary.json
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas        96 Nov 21 03:59 pilot_heartbeat.json
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas   1526164 Nov 21 03:59 agis_ddmendpoints.agis.ALL.json
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas   2324934 Nov 21 03:59 log.47493029._000027.job.log.tgz.1
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas      8643 Nov 21 03:59 heartbeat.json
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas      8192 Nov 21 04:00 boinc_mmap_file
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas        31 Nov 21 04:00 wrapper_checkpoint.txt
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas       936 Nov 21 04:00 pilotlog.txt
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas   9847537 Nov 21 04:00 log.47493029._000027.job.log.1
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas       353 Nov 21 04:00 output.list
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas       620 Nov 21 04:00 runtime_log
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas  12195840 Nov 21 04:00 result.tar.gz
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas       793 Nov 21 04:00 s6LNDmCOrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZoFKDmz7u0cn.diag
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas      8789 Nov 21 04:00 runtime_log.err
[2025-11-21 04:00:23] -rw-r--r-- 1 boincer umatlas     23405 Nov 21 04:00 stderr.txt
[2025-11-21 04:00:23] HITS file was successfully produced:
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas 918360590 Nov 21 03:59 shared/HITS.pool.root.1
[2025-11-21 04:00:23]  *** Contents of shared directory: ***
[2025-11-21 04:00:23] total 1311792
[2025-11-21 04:00:23] -rw-r--r-- 3 boincer umatlas 412096686 Nov 19 14:24 ATLAS.root_0
[2025-11-21 04:00:23] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 14:24 start_atlas.sh
[2025-11-21 04:00:23] -rw-r--r-- 2 boincer umatlas    590093 Nov 19 14:24 input.tar.gz
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas 918360590 Nov 21 03:59 HITS.pool.root.1
[2025-11-21 04:00:23] -rw------- 1 boincer umatlas  12195840 Nov 21 04:00 result.tar.gz
04:00:25 (10229): run_atlas exited; CPU time 549114.143878
04:00:25 (10229): called boinc_finish(0)

</stderr_txt>
]]>

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