Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:09:31 (899016): wrapper (7.7.26015): starting
04:09:31 (899016): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 04:09:31] Arguments: --nthreads 3
[2025-11-24 04:09:31] Threads: 3
[2025-11-24 04:09:31] Checking for CVMFS
[2025-11-24 04:09:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 04:09:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 04:09:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 04:09:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 04:09:31] 2.9.2.0 226161 3943 81540 153230 3 9 8549029 36864000 0 130560 0 1460228 99.979 134516 8637 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 04:09:31] CVMFS is ok
[2025-11-24 04:09:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 04:09:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 04:09:31] Further information can be found at the LHC@home message board.
[2025-11-24 04:09:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 04:09:31] Checking for apptainer binary...
[2025-11-24 04:09:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 04:09:31] Running /usr/bin/apptainer --version
[2025-11-24 04:09:31] apptainer version 1.4.1-1.1
[2025-11-24 04:09:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 04:09:31] atlasA217
[2025-11-24 04:09:31] apptainer works
[2025-11-24 04:09:31] Set ATHENA_PROC_NUMBER=3
[2025-11-24 04:09:31] Set ATHENA_CORE_NUMBER=3
[2025-11-24 04:09:31] Starting ATLAS job with PandaID=6892524055
[2025-11-24 04:09:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:20:57 (988063): wrapper (7.7.26015): starting
11:20:57 (988063): wrapper: running run_atlas (--nthreads 3)
[2025-11-24 11:20:57] Arguments: --nthreads 3
[2025-11-24 11:20:57] Threads: 3
[2025-11-24 11:20:57] This job has been restarted, cleaning up previous attempt
[2025-11-24 11:20:57] Checking for CVMFS
[2025-11-24 11:20:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 11:20:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 11:20:58] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 11:20:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 11:20:58] 2.9.2.0 988189 0 29136 153242 3 1 8591182 36864001 0 130560 0 0 100.000 0 0 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-24 11:20:58] CVMFS is ok
[2025-11-24 11:20:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 11:20:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 11:20:58] Further information can be found at the LHC@home message board.
[2025-11-24 11:20:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 11:20:58] Checking for apptainer binary...
[2025-11-24 11:20:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 11:20:58] Running /usr/bin/apptainer --version
[2025-11-24 11:20:58] apptainer version 1.4.1-1.1
[2025-11-24 11:20:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 11:20:58] atlasA217
[2025-11-24 11:20:58] apptainer works
[2025-11-24 11:20:58] Set ATHENA_PROC_NUMBER=3
[2025-11-24 11:20:58] Set ATHENA_CORE_NUMBER=3
[2025-11-24 11:20:58] Starting ATLAS job with PandaID=6892524055
[2025-11-24 11:20:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 19:49:52]  *** The last 200 lines of the pilot log: ***
[2025-11-24 19:49:52] 2025-11-24 18:48:54,080 | INFO     | monitor loop #2311: job 0:6892524055 is in state 'finished'
[2025-11-24 19:49:52] 2025-11-24 18:48:54,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 19:49:52] 2025-11-24 18:48:54,101 | INFO     | time since job start (30468s) is within the limit (172800.0s)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,197 | INFO     | PID=992313 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 19:49:52] 2025-11-24 18:48:55,409 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 19:49:52] 2025-11-24 18:48:55,410 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3665.3874166666665
[2025-11-24 19:49:52] 2025-11-24 18:48:55,411 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6892524055/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,411 | INFO     | extracted standard info from prmon json
[2025-11-24 19:49:52] 2025-11-24 18:48:55,411 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 19:49:52] 2025-11-24 18:48:55,411 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 19:49:52] 2025-11-24 18:48:55,414 | INFO     | fitting pss+swap vs Time
[2025-11-24 19:49:52] 2025-11-24 18:48:55,414 | INFO     | sum of square deviations: 38528164250.0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,416 | INFO     | sum of deviations: 174575337641.00003
[2025-11-24 19:49:52] 2025-11-24 18:48:55,416 | INFO     | mean x: 1763994876.0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,416 | INFO     | mean y: 2163314.853707415
[2025-11-24 19:49:52] 2025-11-24 18:48:55,416 | INFO     | intersect: -7990690927.473553
[2025-11-24 19:49:52] 2025-11-24 18:48:55,417 | INFO     | chi2: 3.183224838472982
[2025-11-24 19:49:52] 2025-11-24 18:48:55,417 | INFO     | sum of square deviations: 37381566007.5
[2025-11-24 19:49:52] 2025-11-24 18:48:55,419 | INFO     | sum of deviations: 219710077153.5
[2025-11-24 19:49:52] 2025-11-24 18:48:55,419 | INFO     | mean x: 1763994723.5
[2025-11-24 19:49:52] 2025-11-24 18:48:55,419 | INFO     | mean y: 2169283.406882591
[2025-11-24 19:49:52] 2025-11-24 18:48:55,419 | INFO     | intersect: -10365706067.796778
[2025-11-24 19:49:52] 2025-11-24 18:48:55,419 | INFO     | chi2: 2.2995266694574927
[2025-11-24 19:49:52] 2025-11-24 18:48:55,419 | INFO     | current chi2=2.2995266694574927 (change=27.761098064295275 %)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,419 | INFO     | sum of square deviations: 36257944940.0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,421 | INFO     | sum of deviations: 214434238240.99997
[2025-11-24 19:49:52] 2025-11-24 18:48:55,422 | INFO     | mean x: 1763994571.0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,422 | INFO     | mean y: 2168567.3905930473
[2025-11-24 19:49:52] 2025-11-24 18:48:55,422 | INFO     | intersect: -10430326509.746136
[2025-11-24 19:49:52] 2025-11-24 18:48:55,422 | INFO     | chi2: 2.299868167376759
[2025-11-24 19:49:52] 2025-11-24 18:48:55,422 | INFO     | current chi2=2.299868167376759 (change=-0.014850791852176075 %)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,422 | INFO     | right removable region: 488
[2025-11-24 19:49:52] 2025-11-24 18:48:55,422 | INFO     | sum of square deviations: 37381566007.5
[2025-11-24 19:49:52] 2025-11-24 18:48:55,424 | INFO     | sum of deviations: 74147297791.99997
[2025-11-24 19:49:52] 2025-11-24 18:48:55,424 | INFO     | mean x: 1763995028.5
[2025-11-24 19:49:52] 2025-11-24 18:48:55,424 | INFO     | mean y: 2176652.2874493925
[2025-11-24 19:49:52] 2025-11-24 18:48:55,424 | INFO     | intersect: -3496752864.3506446
[2025-11-24 19:49:52] 2025-11-24 18:48:55,424 | INFO     | chi2: 1.1378837292249064
[2025-11-24 19:49:52] 2025-11-24 18:48:55,424 | INFO     | current chi2=1.1378837292249064 (change=64.25374307613289 %)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,425 | INFO     | sum of square deviations: 36257944940.0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | sum of deviations: 50115506419.00003
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | mean x: 1763995181.0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | mean y: 2179898.061349693
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | intersect: -2436003290.83095
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | chi2: 0.9178483229595988
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | current chi2=0.9178483229595988 (change=19.337248667329952 %)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | left removable region: 20
[2025-11-24 19:49:52] 2025-11-24 18:48:55,427 | INFO     | sum of square deviations: 31784398737.0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,429 | INFO     | sum of deviations: 80633144782.50003
[2025-11-24 19:49:52] 2025-11-24 18:48:55,429 | INFO     | mean x: 1763995150.5
[2025-11-24 19:49:52] 2025-11-24 18:48:55,429 | INFO     | mean y: 2186991.9166666665
[2025-11-24 19:49:52] 2025-11-24 18:48:55,429 | INFO     | intersect: -4472853657.517356
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | chi2: 0.023300372888924004
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | current memory leak: 2.54 B/s (using 468 data points, chi2=0.02)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | could have reported an average CPU frequency of 3897 MHz (20 samples)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | ..............................
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . Timing measurements:
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . get job = 0 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . initial setup = 1 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . payload setup = 3 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . stage-in = 0 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . payload execution = 30439 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . stage-out = 1 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | . log creation = 0 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,430 | INFO     | ..............................
[2025-11-24 19:49:52] 2025-11-24 18:48:55,583 | INFO     | 
[2025-11-24 19:49:52] 2025-11-24 18:48:55,583 | INFO     | job summary report
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | --------------------------------------------------
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | PanDA job id: 6892524055
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | task id: 47493029
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | errors: (none)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | pilot state: finished 
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | transexitcode: 0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | exeerrorcode: 0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | exeerrordiag: 
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | exitcode: 0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | exitmsg: OK
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | cpuconsumptiontime: 90055 s
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | nevents: 1000
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | neventsw: 0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | pid: 998858
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | pgrp: 998858
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | corecount: 3
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | event service: False
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | sizes: {0: 2298795, 2: 2299057, 10: 2299085, 30445: 2338539, 30447: 2348330, 30450: 2348386, 30455: 2348760}
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | --------------------------------------------------
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | 
[2025-11-24 19:49:52] 2025-11-24 18:48:55,584 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-11-24 19:49:52] 2025-11-24 18:48:55,600 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,600 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | job 6892524055 has completed (purged errors)
[2025-11-24 19:49:52] 2025-11-24 18:48:55,601 | INFO     | overall cleanup function is called
[2025-11-24 19:49:52] 2025-11-24 18:48:56,610 | INFO     | --- collectZombieJob: --- 10, [998858]
[2025-11-24 19:49:52] 2025-11-24 18:48:56,610 | INFO     | zombie collector waiting for pid 998858
[2025-11-24 19:49:52] 2025-11-24 18:48:56,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 19:49:52] 2025-11-24 18:48:56,610 | INFO     | collected zombie processes
[2025-11-24 19:49:52] 2025-11-24 18:48:56,610 | INFO     | will attempt to kill all subprocesses of pid=998858
[2025-11-24 19:49:52] 2025-11-24 18:48:56,670 | INFO     | process IDs to be killed: [998858] (in reverse order)
[2025-11-24 19:49:52] 2025-11-24 18:48:56,701 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 19:49:52] 2025-11-24 18:48:56,701 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 19:49:52] 2025-11-24 18:48:56,703 | INFO     | did not find any defunct processes belonging to 998858
[2025-11-24 19:49:52] 2025-11-24 18:48:56,704 | INFO     | did not find any defunct processes belonging to 998858
[2025-11-24 19:49:52] 2025-11-24 18:48:56,705 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 19:49:52] 2025-11-24 18:48:56,705 | INFO     | ready for new job
[2025-11-24 19:49:52] 2025-11-24 18:48:56,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 19:49:52] 2025-11-24 18:48:56,706 | INFO     | ***************************************
[2025-11-24 19:49:52] 2025-11-24 18:48:56,706 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 19:49:52] 2025-11-24 18:48:56,706 | INFO     | ***************************************
[2025-11-24 19:49:52] 2025-11-24 18:48:56,706 | INFO     | 
[2025-11-24 19:49:52] 2025-11-24 18:48:56,707 | INFO     | architecture information:
[2025-11-24 19:49:52] 2025-11-24 18:48:56,707 | INFO     | executing command: cat /etc/os-release
[2025-11-24 19:49:52] 2025-11-24 18:48:56,717 | INFO     | cat /etc/os-release:
[2025-11-24 19:49:52] NAME="CentOS Linux"
[2025-11-24 19:49:52] VERSION="7 (Core)"
[2025-11-24 19:49:52] ID="centos"
[2025-11-24 19:49:52] ID_LIKE="rhel fedora"
[2025-11-24 19:49:52] VERSION_ID="7"
[2025-11-24 19:49:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 19:49:52] ANSI_COLOR="0;31"
[2025-11-24 19:49:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 19:49:52] HOME_URL="https://www.centos.org/"
[2025-11-24 19:49:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 19:49:52] 
[2025-11-24 19:49:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 19:49:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 19:49:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 19:49:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 19:49:52] 
[2025-11-24 19:49:52] 2025-11-24 18:48:56,717 | INFO     | ***************************************
[2025-11-24 19:49:52] 2025-11-24 18:48:57,220 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-24 19:49:52] 2025-11-24 18:48:57,233 | INFO     | sufficient remaining disk space (345370525696 B)
[2025-11-24 19:49:52] 2025-11-24 18:48:57,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 19:49:52] 2025-11-24 18:48:57,234 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 19:49:52] 2025-11-24 18:48:57,234 | INFO     | update_server=False
[2025-11-24 19:49:52] 2025-11-24 18:48:57,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 19:49:52] 2025-11-24 18:48:57,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:49:52] 2025-11-24 18:48:57,561 | INFO     | all job control threads have been joined
[2025-11-24 19:49:52] 2025-11-24 18:48:57,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 19:49:52] 2025-11-24 18:48:57,590 | INFO     | aborting loop
[2025-11-24 19:49:52] 2025-11-24 18:48:58,036 | INFO     | all data control threads have been joined
[2025-11-24 19:49:52] 2025-11-24 18:48:58,065 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 19:49:52] 2025-11-24 18:48:58,239 | INFO     | [job] queue monitor thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:58,239 | INFO     | [job] retrieve thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:58,310 | INFO     | all payload control threads have been joined
[2025-11-24 19:49:52] 2025-11-24 18:48:58,567 | INFO     | [job] control thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:58,569 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:58,596 | INFO     | [job] job monitor thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:58,779 | INFO     | [payload] failed_post thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:58,986 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:59,041 | INFO     | [data] control thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:59,316 | INFO     | [payload] control thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:59,395 | INFO     | [payload] validate_post thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:59,519 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:59,557 | INFO     | [data] copytool_in thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:59,564 | INFO     | [job] validate thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:48:59,622 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:49:00,071 | INFO     | [data] copytool_out thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:49:00,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 19:49:52] 2025-11-24 18:49:04,444 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 19:49:52] 2025-11-24 18:49:27,320 | INFO     | PID=992313 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 19:49:52] 2025-11-24 18:49:27,320 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 19:49:52] 2025-11-24 18:49:27,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 19:49:52] 2025-11-24 18:49:27,321 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 19:49:52] 2025-11-24 18:49:46,791 | INFO     | [monitor] cgroup control has ended
[2025-11-24 19:49:52] 2025-11-24 18:49:47,575 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723031136064)>', '<ExcThread(monitor, started 139722749871872)>']
[2025-11-24 19:49:52] 2025-11-24 18:49:48,413 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 19:49:52] 2025-11-24 18:49:48,413 | INFO     | [monitor] control thread has ended
[2025-11-24 19:49:52] 2025-11-24 18:49:52,586 | INFO     | all workflow threads have been joined
[2025-11-24 19:49:52] 2025-11-24 18:49:52,586 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 19:49:52] 2025-11-24 18:49:52,586 | INFO     | traces error code: 0
[2025-11-24 19:49:52] 2025-11-24 18:49:52,586 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 19:49:52] 2025-11-24 18:49:52,640 [wrapper] ==== pilot stdout END ====
[2025-11-24 19:49:52] 2025-11-24 18:49:52,642 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 19:49:52] 2025-11-24 18:49:52,644 [wrapper] pilotpid: 992313
[2025-11-24 19:49:52] 2025-11-24 18:49:52,646 [wrapper] Pilot exit status: 0
[2025-11-24 19:49:52] 2025-11-24 18:49:52,653 [wrapper] pandaids: 6892524055 6892524055
[2025-11-24 19:49:52] 2025-11-24 18:49:52,674 [wrapper] cleanup supervisor_pilot 1230449 992314
[2025-11-24 19:49:52] 2025-11-24 18:49:52,676 [wrapper] Test setup, not cleaning
[2025-11-24 19:49:52] 2025-11-24 18:49:52,678 [wrapper] apfmon messages muted
[2025-11-24 19:49:52] 2025-11-24 18:49:52,681 [wrapper] ==== wrapper stdout END ====
[2025-11-24 19:49:52] 2025-11-24 18:49:52,683 [wrapper] ==== wrapper stderr END ====
[2025-11-24 19:49:52]  *** Error codes and diagnostics ***
[2025-11-24 19:49:52]     "exeErrorCode": 0,
[2025-11-24 19:49:52]     "exeErrorDiag": "",
[2025-11-24 19:49:52]     "pilotErrorCode": 0,
[2025-11-24 19:49:52]     "pilotErrorDiag": "",
[2025-11-24 19:49:52]  *** Listing of results directory ***
[2025-11-24 19:49:52] total 1711828
[2025-11-24 19:49:52] drwx------ 5 boinc boinc      4096 Nov  5 18:16 pilot3
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:07 queuedata.json
[2025-11-24 19:49:52] -rwx------ 1 boinc boinc     36292 Nov 19 08:08 runpilot2-wrapper.sh
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc       100 Nov 24 04:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 19:49:52] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 04:09 run_atlas
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc       105 Nov 24 04:09 job.xml
[2025-11-24 19:49:52] -rw-r--r-- 3 boinc boinc 409616547 Nov 24 04:09 EVNT.47493027._000086.pool.root.1
[2025-11-24 19:49:52] -rw-r--r-- 3 boinc boinc 409616547 Nov 24 04:09 ATLAS.root_0
[2025-11-24 19:49:52] drwxrwx--x 2 boinc boinc      4096 Nov 24 04:09 shared
[2025-11-24 19:49:52] -rw-r--r-- 2 boinc boinc    590097 Nov 24 04:09 input.tar.gz
[2025-11-24 19:49:52] -rw-r--r-- 2 boinc boinc     15120 Nov 24 04:09 start_atlas.sh
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc         0 Nov 24 04:09 boinc_setup_complete
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc         0 Nov 24 04:09 boinc_lockfile
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc      6446 Nov 24 11:20 init_data.xml
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc      2771 Nov 24 11:20 pandaJob.out
[2025-11-24 19:49:52] -rw------- 1 boinc boinc    989824 Nov 24 11:21 agis_schedconf.cvmfs.json
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc       532 Nov 24 19:45 boinc_task_state.xml
[2025-11-24 19:49:52] -rw------- 1 boinc boinc 918838458 Nov 24 19:48 HITS.47493029._000815.pool.root.1
[2025-11-24 19:49:52] -rw------- 1 boinc boinc      1035 Nov 24 19:48 memory_monitor_summary.json
[2025-11-24 19:49:52] -rw------- 1 boinc boinc   1516227 Nov 24 19:48 agis_ddmendpoints.agis.ALL.json
[2025-11-24 19:49:52] -rw------- 1 boinc boinc   1192951 Nov 24 19:48 log.47493029._000815.job.log.tgz.1
[2025-11-24 19:49:52] -rw------- 1 boinc boinc      8566 Nov 24 19:48 heartbeat.json
[2025-11-24 19:49:52] -rw------- 1 boinc boinc        96 Nov 24 19:49 pilot_heartbeat.json
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc        29 Nov 24 19:49 wrapper_checkpoint.txt
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc      8192 Nov 24 19:49 boinc_mmap_file
[2025-11-24 19:49:52] -rw------- 1 boinc boinc      4751 Nov 24 19:49 pilotlog.txt
[2025-11-24 19:49:52] -rw------- 1 boinc boinc   4269456 Nov 24 19:49 log.47493029._000815.job.log.1
[2025-11-24 19:49:52] -rw------- 1 boinc boinc       353 Nov 24 19:49 output.list
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc       620 Nov 24 19:49 runtime_log
[2025-11-24 19:49:52] -rw------- 1 boinc boinc   5478400 Nov 24 19:49 result.tar.gz
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc      8878 Nov 24 19:49 runtime_log.err
[2025-11-24 19:49:52] -rw------- 1 boinc boinc       793 Nov 24 19:49 oi4MDmJUrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmrtFKDmn4TQtn.diag
[2025-11-24 19:49:52] -rw-r--r-- 1 boinc boinc     23476 Nov 24 19:49 stderr.txt
[2025-11-24 19:49:52] HITS file was successfully produced:
[2025-11-24 19:49:52] -rw------- 1 boinc boinc 918838458 Nov 24 19:48 shared/HITS.pool.root.1
[2025-11-24 19:49:52]  *** Contents of shared directory: ***
[2025-11-24 19:49:52] total 1303276
[2025-11-24 19:49:52] -rw-r--r-- 3 boinc boinc 409616547 Nov 24 04:09 ATLAS.root_0
[2025-11-24 19:49:52] -rw-r--r-- 2 boinc boinc    590097 Nov 24 04:09 input.tar.gz
[2025-11-24 19:49:52] -rw-r--r-- 2 boinc boinc     15120 Nov 24 04:09 start_atlas.sh
[2025-11-24 19:49:52] -rw------- 1 boinc boinc 918838458 Nov 24 19:48 HITS.pool.root.1
[2025-11-24 19:49:52] -rw------- 1 boinc boinc   5478400 Nov 24 19:49 result.tar.gz
19:49:53 (988063): run_atlas exited; CPU time 90056.704805
19:49:53 (988063): called boinc_finish(0)

</stderr_txt>
]]>

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