Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
11:55:03 (186287): wrapper (7.7.26015): starting
11:55:03 (186287): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 11:55:03] Arguments: --nthreads 12
[2025-11-22 11:55:03] Threads: 12
[2025-11-22 11:55:03] Checking for CVMFS
[2025-11-22 11:55:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 11:55:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 11:55:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 11:55:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 11:55:05] 2.13.0.0 2291514 5178 165268 153170 3 88 3819816 4096001 11674 130560 0 31542819 99.976 844491 579 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-22 11:55:05] CVMFS is ok
[2025-11-22 11:55:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 11:55:05] Checking for apptainer binary...
[2025-11-22 11:55:05] apptainer is not installed, using version from CVMFS
[2025-11-22 11:55:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 11:55:11] epyc7v12
[2025-11-22 11:55:11] apptainer works
[2025-11-22 11:55:11] Set ATHENA_PROC_NUMBER=12
[2025-11-22 11:55:11] Set ATHENA_CORE_NUMBER=12
[2025-11-22 11:55:11] Starting ATLAS job with PandaID=6886205509
[2025-11-22 11:55:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31419/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 18:44:00]  *** The last 200 lines of the pilot log: ***
[2025-11-22 18:44:00] 2025-11-22 18:42:53,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:44:00] 2025-11-22 18:42:54,871 | INFO     | time since job start (24347s) is within the limit (172800.0s)
[2025-11-22 18:44:00] 2025-11-22 18:42:55,909 | INFO     | monitor loop #1573: job 0:6886205509 is in state 'finished'
[2025-11-22 18:44:00] 2025-11-22 18:42:55,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:44:00] 2025-11-22 18:42:56,883 | INFO     | time since job start (24349s) is within the limit (172800.0s)
[2025-11-22 18:44:00] 2025-11-22 18:42:58,423 | INFO     | monitor loop #1574: job 0:6886205509 is in state 'finished'
[2025-11-22 18:44:00] 2025-11-22 18:42:58,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:44:00] 2025-11-22 18:42:58,891 | INFO     | time since job start (24351s) is within the limit (172800.0s)
[2025-11-22 18:44:00] 2025-11-22 18:43:00,899 | INFO     | time since job start (24353s) is within the limit (172800.0s)
[2025-11-22 18:44:00] 2025-11-22 18:43:00,930 | INFO     | monitor loop #1575: job 0:6886205509 is in state 'finished'
[2025-11-22 18:44:00] 2025-11-22 18:43:00,930 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:44:00] 2025-11-22 18:43:02,907 | INFO     | time since job start (24355s) is within the limit (172800.0s)
[2025-11-22 18:44:00] 2025-11-22 18:43:03,443 | INFO     | monitor loop #1576: job 0:6886205509 is in state 'finished'
[2025-11-22 18:44:00] 2025-11-22 18:43:03,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 18:44:00] 2025-11-22 18:43:04,919 | INFO     | time since job start (24357s) is within the limit (172800.0s)
[2025-11-22 18:44:00] 2025-11-22 18:43:05,144 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 18:44:00] 2025-11-22 18:43:05,193 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2387.693570312499
[2025-11-22 18:44:00] 2025-11-22 18:43:05,221 | INFO     | using path: /opt/boinc/instance_homes/boinc_31419/slots/4/PanDA_Pilot-6886205509/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 18:44:00] 2025-11-22 18:43:05,222 | INFO     | extracted standard info from prmon json
[2025-11-22 18:44:00] 2025-11-22 18:43:05,222 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 18:44:00] 2025-11-22 18:43:05,222 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 18:44:00] 2025-11-22 18:43:05,230 | INFO     | fitting pss+swap vs Time
[2025-11-22 18:44:00] 2025-11-22 18:43:05,230 | INFO     | sum of square deviations: 18112164521.81442
[2025-11-22 18:44:00] 2025-11-22 18:43:05,235 | INFO     | sum of deviations: 812388058801.2474
[2025-11-22 18:44:00] 2025-11-22 18:43:05,235 | INFO     | mean x: 1763824981.7835052
[2025-11-22 18:44:00] 2025-11-22 18:43:05,235 | INFO     | mean y: 3447000.288659794
[2025-11-22 18:44:00] 2025-11-22 18:43:05,235 | INFO     | intersect: -79109701032.92625
[2025-11-22 18:44:00] 2025-11-22 18:43:05,236 | INFO     | chi2: 56.4940079187871
[2025-11-22 18:44:00] 2025-11-22 18:43:05,236 | INFO     | sum of square deviations: 17421084838.47004
[2025-11-22 18:44:00] 2025-11-22 18:43:05,241 | INFO     | sum of deviations: 976624548725.706
[2025-11-22 18:44:00] 2025-11-22 18:43:05,241 | INFO     | mean x: 1763824829.300261
[2025-11-22 18:44:00] 2025-11-22 18:43:05,241 | INFO     | mean y: 3483261.950391645
[2025-11-22 18:44:00] 2025-11-22 18:43:05,241 | INFO     | intersect: -98876388107.63564
[2025-11-22 18:44:00] 2025-11-22 18:43:05,242 | INFO     | chi2: 52.320292946185525
[2025-11-22 18:44:00] 2025-11-22 18:43:05,242 | INFO     | current chi2=52.320292946185525 (change=7.38788966539866 %)
[2025-11-22 18:44:00] 2025-11-22 18:43:05,242 | INFO     | right removable region: 382
[2025-11-22 18:44:00] 2025-11-22 18:43:05,243 | INFO     | sum of square deviations: 17420781058.470043
[2025-11-22 18:44:00] 2025-11-22 18:43:05,247 | INFO     | sum of deviations: 608598212354.2119
[2025-11-22 18:44:00] 2025-11-22 18:43:05,247 | INFO     | mean x: 1763825134.300261
[2025-11-22 18:44:00] 2025-11-22 18:43:05,247 | INFO     | mean y: 3491957.8851174936
[2025-11-22 18:44:00] 2025-11-22 18:43:05,247 | INFO     | intersect: -61616065743.785576
[2025-11-22 18:44:00] 2025-11-22 18:43:05,248 | INFO     | chi2: 49.88501747350572
[2025-11-22 18:44:00] 2025-11-22 18:43:05,248 | INFO     | current chi2=49.88501747350572 (change=11.698568908019634 %)
[2025-11-22 18:44:00] 2025-11-22 18:43:05,248 | INFO     | left removable region: 10
[2025-11-22 18:44:00] 2025-11-22 18:43:05,249 | INFO     | sum of square deviations: 15962480818.32258
[2025-11-22 18:44:00] 2025-11-22 18:43:05,253 | INFO     | sum of deviations: 612839214698.5808
[2025-11-22 18:44:00] 2025-11-22 18:43:05,253 | INFO     | mean x: 1763825103.8387096
[2025-11-22 18:44:00] 2025-11-22 18:43:05,253 | INFO     | mean y: 3584859.709677419
[2025-11-22 18:44:00] 2025-11-22 18:43:05,253 | INFO     | intersect: -67714033961.88327
[2025-11-22 18:44:00] 2025-11-22 18:43:05,254 | INFO     | chi2: 38.46194123447384
[2025-11-22 18:44:00] 2025-11-22 18:43:05,254 | INFO     | current memory leak: 38.39 B/s (using 372 data points, chi2=38.46)
[2025-11-22 18:44:00] 2025-11-22 18:43:05,254 | INFO     | could have reported an average CPU frequency of 2393 MHz (16 samples)
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | ..............................
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . Timing measurements:
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . get job = 0 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . initial setup = 2 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . payload setup = 198 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . stage-in = 0 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . payload execution = 23859 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . stage-out = 6 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,255 | INFO     | . log creation = 2 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,256 | INFO     | ..............................
[2025-11-22 18:44:00] 2025-11-22 18:43:05,559 | INFO     | 
[2025-11-22 18:44:00] 2025-11-22 18:43:05,559 | INFO     | job summary report
[2025-11-22 18:44:00] 2025-11-22 18:43:05,559 | INFO     | --------------------------------------------------
[2025-11-22 18:44:00] 2025-11-22 18:43:05,559 | INFO     | PanDA job id: 6886205509
[2025-11-22 18:44:00] 2025-11-22 18:43:05,559 | INFO     | task id: 47450870
[2025-11-22 18:44:00] 2025-11-22 18:43:05,559 | INFO     | errors: (none)
[2025-11-22 18:44:00] 2025-11-22 18:43:05,559 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | pilot state: finished 
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | transexitcode: 0
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | exeerrorcode: 0
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | exeerrordiag: 
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | exitcode: 0
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | exitmsg: OK
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | cpuconsumptiontime: 164930 s
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | nevents: 1000
[2025-11-22 18:44:00] 2025-11-22 18:43:05,560 | INFO     | neventsw: 0
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | pid: 237417
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | pgrp: 237417
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | corecount: 12
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | event service: False
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | sizes: {0: 2298178, 1: 2298886, 2: 2299085, 13: 2299085, 23: 2299141, 34: 2299169, 45: 2299325, 56: 2299353, 67: 2299381, 72: 2299671, 77: 2299699, 24063: 2355436,
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | --------------------------------------------------
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | 
[2025-11-22 18:44:00] 2025-11-22 18:43:05,561 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31419/slots/4
[2025-11-22 18:44:00] 2025-11-22 18:43:06,475 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,475 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 18:44:00] 2025-11-22 18:43:06,478 | INFO     | job 6886205509 has completed (purged errors)
[2025-11-22 18:44:00] 2025-11-22 18:43:06,478 | INFO     | overall cleanup function is called
[2025-11-22 18:44:00] 2025-11-22 18:43:07,221 | INFO     | PID=210988 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 18:44:00] 2025-11-22 18:43:07,221 | INFO     | .. there are 16 such processes running
[2025-11-22 18:44:00] 2025-11-22 18:43:07,559 | INFO     | --- collectZombieJob: --- 10, [237417]
[2025-11-22 18:44:00] 2025-11-22 18:43:07,559 | INFO     | zombie collector waiting for pid 237417
[2025-11-22 18:44:00] 2025-11-22 18:43:07,559 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 18:44:00] 2025-11-22 18:43:07,559 | INFO     | collected zombie processes
[2025-11-22 18:44:00] 2025-11-22 18:43:07,559 | INFO     | will attempt to kill all subprocesses of pid=237417
[2025-11-22 18:44:00] 2025-11-22 18:43:08,761 | INFO     | process IDs to be killed: [237417] (in reverse order)
[2025-11-22 18:44:00] 2025-11-22 18:43:16,793 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 18:44:00] 2025-11-22 18:43:16,794 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 18:44:00] 2025-11-22 18:43:16,833 | INFO     | did not find any defunct processes belonging to 237417
[2025-11-22 18:44:00] 2025-11-22 18:43:16,872 | INFO     | did not find any defunct processes belonging to 237417
[2025-11-22 18:44:00] 2025-11-22 18:43:16,892 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 18:44:00] 2025-11-22 18:43:16,892 | INFO     | ready for new job
[2025-11-22 18:44:00] 2025-11-22 18:43:16,893 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 18:44:00] 2025-11-22 18:43:16,896 | INFO     | ***************************************
[2025-11-22 18:44:00] 2025-11-22 18:43:16,896 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 18:44:00] 2025-11-22 18:43:16,896 | INFO     | ***************************************
[2025-11-22 18:44:00] 2025-11-22 18:43:16,896 | INFO     | 
[2025-11-22 18:44:00] 2025-11-22 18:43:16,941 | INFO     | architecture information:
[2025-11-22 18:44:00] 2025-11-22 18:43:16,947 | INFO     | executing command: cat /etc/os-release
[2025-11-22 18:44:00] 2025-11-22 18:43:17,108 | INFO     | cat /etc/os-release:
[2025-11-22 18:44:00] NAME="CentOS Linux"
[2025-11-22 18:44:00] VERSION="7 (Core)"
[2025-11-22 18:44:00] ID="centos"
[2025-11-22 18:44:00] ID_LIKE="rhel fedora"
[2025-11-22 18:44:00] VERSION_ID="7"
[2025-11-22 18:44:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 18:44:00] ANSI_COLOR="0;31"
[2025-11-22 18:44:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 18:44:00] HOME_URL="https://www.centos.org/"
[2025-11-22 18:44:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 18:44:00] 
[2025-11-22 18:44:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 18:44:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 18:44:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 18:44:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 18:44:00] 
[2025-11-22 18:44:00] 2025-11-22 18:43:17,108 | INFO     | ***************************************
[2025-11-22 18:44:00] 2025-11-22 18:43:17,611 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31419/slots/4
[2025-11-22 18:44:00] 2025-11-22 18:43:17,808 | INFO     | sufficient remaining disk space (328571289600 B)
[2025-11-22 18:44:00] 2025-11-22 18:43:17,809 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 18:44:00] 2025-11-22 18:43:17,809 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 18:44:00] 2025-11-22 18:43:17,809 | INFO     | update_server=False
[2025-11-22 18:44:00] 2025-11-22 18:43:17,809 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 18:44:00] 2025-11-22 18:43:17,809 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:44:00] 2025-11-22 18:43:17,810 | INFO     | aborting loop
[2025-11-22 18:44:00] 2025-11-22 18:43:18,447 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 18:44:00] 2025-11-22 18:43:18,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 18:44:00] 2025-11-22 18:43:18,591 | INFO     | all data control threads have been joined
[2025-11-22 18:44:00] 2025-11-22 18:43:18,687 | INFO     | all payload control threads have been joined
[2025-11-22 18:44:00] 2025-11-22 18:43:18,811 | INFO     | [job] retrieve thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:18,815 | INFO     | [job] job monitor thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 18:44:00] 2025-11-22 18:43:19,263 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,403 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,459 | INFO     | [job] queue monitor thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,501 | INFO     | all job control threads have been joined
[2025-11-22 18:44:00] 2025-11-22 18:43:19,527 | INFO     | [data] copytool_in thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,595 | INFO     | [data] control thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,639 | INFO     | [payload] validate_post thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,695 | INFO     | [payload] control thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:19,739 | INFO     | [payload] failed_post thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:20,055 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:20,183 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:20,203 | INFO     | [job] validate thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:20,511 | INFO     | [job] control thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:21,067 | INFO     | [data] copytool_out thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:22,503 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 18:44:00] 2025-11-22 18:43:40,545 | INFO     | PID=210988 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-22 18:44:00] 2025-11-22 18:43:40,545 | INFO     | .. there are 16 such processes running
[2025-11-22 18:44:00] 2025-11-22 18:43:40,545 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 18:44:00] 2025-11-22 18:43:40,545 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 18:44:00] 2025-11-22 18:43:40,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 18:44:00] 2025-11-22 18:43:48,231 | INFO     | [monitor] cgroup control has ended
[2025-11-22 18:44:00] 2025-11-22 18:43:49,867 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795373213504)>', '<ExcThread(monitor, started 139795154257664)>']
[2025-11-22 18:44:00] 2025-11-22 18:43:50,607 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 18:44:00] 2025-11-22 18:43:50,607 | INFO     | [monitor] control thread has ended
[2025-11-22 18:44:00] 2025-11-22 18:43:54,891 | INFO     | all workflow threads have been joined
[2025-11-22 18:44:00] 2025-11-22 18:43:54,891 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 18:44:00] 2025-11-22 18:43:54,891 | INFO     | traces error code: 0
[2025-11-22 18:44:00] 2025-11-22 18:43:54,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 18:44:00] 2025-11-22 18:43:55,223 [wrapper] ==== pilot stdout END ====
[2025-11-22 18:44:00] 2025-11-22 18:43:55,311 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 18:44:00] 2025-11-22 18:43:55,403 [wrapper] pilotpid: 210988
[2025-11-22 18:44:00] 2025-11-22 18:43:55,535 [wrapper] Pilot exit status: 0
[2025-11-22 18:44:00] 2025-11-22 18:43:56,119 [wrapper] pandaids: 6886205509
[2025-11-22 18:44:00] 2025-11-22 18:43:56,891 [wrapper] cleanup supervisor_pilot  917349 210989
[2025-11-22 18:44:00] 2025-11-22 18:43:56,955 [wrapper] Test setup, not cleaning
[2025-11-22 18:44:00] 2025-11-22 18:43:56,974 [wrapper] apfmon messages muted
[2025-11-22 18:44:00] 2025-11-22 18:43:56,985 [wrapper] ==== wrapper stdout END ====
[2025-11-22 18:44:00] 2025-11-22 18:43:56,992 [wrapper] ==== wrapper stderr END ====
[2025-11-22 18:44:00]  *** Error codes and diagnostics ***
[2025-11-22 18:44:00]     "exeErrorCode": 0,
[2025-11-22 18:44:00]     "exeErrorDiag": "",
[2025-11-22 18:44:00]     "pilotErrorCode": 0,
[2025-11-22 18:44:00]     "pilotErrorDiag": "",
[2025-11-22 18:44:00]  *** Listing of results directory ***
[2025-11-22 18:44:00] total 926828
[2025-11-22 18:44:00] -rw-r--r-- 1 boinc boinc    576529 Nov 14 14:59 pilot3.tar.gz
[2025-11-22 18:44:00] -rw-r--r-- 1 boinc boinc      5112 Nov 14 15:00 queuedata.json
[2025-11-22 18:44:00] -rwx------ 1 boinc boinc     36292 Nov 14 15:02 runpilot2-wrapper.sh
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc       100 Nov 22 11:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 18:44:00] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 11:55 run_atlas
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc       105 Nov 22 11:55 job.xml
[2025-11-22 18:44:00] -rw-r--r-- 2 boinc boinc     15120 Nov 22 11:55 start_atlas.sh
[2025-11-22 18:44:00] drwxrwx--x 2 boinc boinc      4096 Nov 22 11:55 shared
[2025-11-22 18:44:00] -rw-r--r-- 2 boinc boinc    590127 Nov 22 11:55 input.tar.gz
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc      6545 Nov 22 11:55 init_data.xml
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc         0 Nov 22 11:55 boinc_setup_complete
[2025-11-22 18:44:00] -rw-r--r-- 2 boinc boinc 378597485 Nov 22 11:55 EVNT.14545720._000237.pool.root.1
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc         0 Nov 22 11:55 boinc_lockfile
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc      2931 Nov 22 11:55 pandaJob.out
[2025-11-22 18:44:00] -rw------- 1 boinc boinc    989768 Nov 22 11:57 agis_schedconf.cvmfs.json
[2025-11-22 18:44:00] drwx------ 5 boinc boinc      4096 Nov 22 11:57 pilot3
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc       533 Nov 22 18:11 boinc_task_state.xml
[2025-11-22 18:44:00] -rw------- 1 boinc boinc 555738063 Nov 22 18:39 HITS.47450870._002188.pool.root.1
[2025-11-22 18:44:00] -rw------- 1 boinc boinc      1034 Nov 22 18:40 memory_monitor_summary.json
[2025-11-22 18:44:00] -rw------- 1 boinc boinc   1526164 Nov 22 18:40 agis_ddmendpoints.agis.ALL.json
[2025-11-22 18:44:00] -rw------- 1 boinc boinc   2194312 Nov 22 18:40 log.47450870._002188.job.log.tgz.1
[2025-11-22 18:44:00] -rw------- 1 boinc boinc        95 Nov 22 18:43 pilot_heartbeat.json
[2025-11-22 18:44:00] -rw------- 1 boinc boinc     28319 Nov 22 18:43 heartbeat.json
[2025-11-22 18:44:00] -rw------- 1 boinc boinc      4847 Nov 22 18:43 pilotlog.txt
[2025-11-22 18:44:00] -rw------- 1 boinc boinc   3191859 Nov 22 18:43 log.47450870._002188.job.log.1
[2025-11-22 18:44:00] -rw------- 1 boinc boinc       353 Nov 22 18:43 output.list
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc       620 Nov 22 18:43 runtime_log
[2025-11-22 18:44:00] -rw------- 1 boinc boinc   5427200 Nov 22 18:43 result.tar.gz
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc      8192 Nov 22 18:44 boinc_mmap_file
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc        29 Nov 22 18:44 wrapper_checkpoint.txt
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc      9008 Nov 22 18:44 runtime_log.err
[2025-11-22 18:44:00] -rw------- 1 boinc boinc       660 Nov 22 18:44 HMqMDmcUAe8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYvJODmm06qBo.diag
[2025-11-22 18:44:00] -rw-rw-r-- 1 boinc boinc     21672 Nov 22 18:44 stderr.txt
[2025-11-22 18:44:00] HITS file was successfully produced:
[2025-11-22 18:44:01] -rw------- 1 boinc boinc 555738063 Nov 22 18:39 shared/HITS.pool.root.1
[2025-11-22 18:44:01]  *** Contents of shared directory: ***
[2025-11-22 18:44:01] total 918348
[2025-11-22 18:44:01] -rw-r--r-- 2 boinc boinc     15120 Nov 22 11:55 start_atlas.sh
[2025-11-22 18:44:01] -rw-r--r-- 2 boinc boinc    590127 Nov 22 11:55 input.tar.gz
[2025-11-22 18:44:01] -rw-r--r-- 2 boinc boinc 378597485 Nov 22 11:55 ATLAS.root_0
[2025-11-22 18:44:01] -rw------- 1 boinc boinc 555738063 Nov 22 18:39 HITS.pool.root.1
[2025-11-22 18:44:01] -rw------- 1 boinc boinc   5427200 Nov 22 18:43 result.tar.gz
18:44:02 (186287): run_atlas exited; CPU time 165757.637906
18:44:02 (186287): called boinc_finish(0)

</stderr_txt>
]]>

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