Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:04:06 (633807): wrapper (7.7.26015): starting
01:04:06 (633807): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 01:04:06] Arguments: --nthreads 4
[2025-11-21 01:04:06] Threads: 4
[2025-11-21 01:04:06] Checking for CVMFS
[2025-11-21 01:04:06] No cvmfs_config command found, will try listing directly
[2025-11-21 01:04:06] CVMFS is ok
[2025-11-21 01:04:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 01:04:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 01:04:06] Further information can be found at the LHC@home message board.
[2025-11-21 01:04:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 01:04:06] Checking for apptainer binary...
[2025-11-21 01:04:06] which: no apptainer in ((null))
[2025-11-21 01:04:06] apptainer is not installed, using version from CVMFS
[2025-11-21 01:04:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 01:04:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-21 01:04:06] apptainer works
[2025-11-21 01:04:06] Set ATHENA_PROC_NUMBER=4
[2025-11-21 01:04:06] Set ATHENA_CORE_NUMBER=4
[2025-11-21 01:04:06] Starting ATLAS job with PandaID=6892522315
[2025-11-21 01:04:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 16:34:35]  *** The last 200 lines of the pilot log: ***
[2025-11-21 16:34:35] 2025-11-21 15:30:49,895 | INFO     | time since job start (55589s) is within the limit (172800.0s)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,807 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 16:34:35] 2025-11-21 15:30:50,819 | INFO     | monitor loop #3767: job 0:6892522315 is in state 'finished'
[2025-11-21 16:34:35] 2025-11-21 15:30:50,819 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,830 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2698.801726562499
[2025-11-21 16:34:35] 2025-11-21 15:30:50,855 | INFO     | using path: /scratch/boinc/var/slot124/slots/1/PanDA_Pilot-6892522315/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,856 | INFO     | extracted standard info from prmon json
[2025-11-21 16:34:35] 2025-11-21 15:30:50,856 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 16:34:35] 2025-11-21 15:30:50,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 16:34:35] 2025-11-21 15:30:50,873 | INFO     | fitting pss+swap vs Time
[2025-11-21 16:34:35] 2025-11-21 15:30:50,874 | INFO     | sum of square deviations: 234440711960.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,893 | INFO     | sum of deviations: 668239583104.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,893 | INFO     | mean x: 1763711250.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,893 | INFO     | mean y: 2265427.028540066
[2025-11-21 16:34:35] 2025-11-21 15:30:50,893 | INFO     | intersect: -5024940217.257863
[2025-11-21 16:34:35] 2025-11-21 15:30:50,894 | INFO     | chi2: 4.499932976229066
[2025-11-21 16:34:35] 2025-11-21 15:30:50,895 | INFO     | sum of square deviations: 230601691142.5
[2025-11-21 16:34:35] 2025-11-21 15:30:50,915 | INFO     | sum of deviations: 875330150599.9999
[2025-11-21 16:34:35] 2025-11-21 15:30:50,915 | INFO     | mean x: 1763711097.5
[2025-11-21 16:34:35] 2025-11-21 15:30:50,915 | INFO     | mean y: 2273648.949227373
[2025-11-21 16:34:35] 2025-11-21 15:30:50,915 | INFO     | intersect: -6692514637.037621
[2025-11-21 16:34:35] 2025-11-21 15:30:50,916 | INFO     | chi2: 1.9822581747592032
[2025-11-21 16:34:35] 2025-11-21 15:30:50,916 | INFO     | current chi2=1.9822581747592032 (change=55.94916223796 %)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,917 | INFO     | sum of square deviations: 226804810650.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,934 | INFO     | sum of deviations: 876948299429.9996
[2025-11-21 16:34:35] 2025-11-21 15:30:50,934 | INFO     | mean x: 1763710945.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,934 | INFO     | mean y: 2273712.067702553
[2025-11-21 16:34:35] 2025-11-21 15:30:50,934 | INFO     | intersect: -6817172971.938635
[2025-11-21 16:34:35] 2025-11-21 15:30:50,935 | INFO     | chi2: 1.9505340188741622
[2025-11-21 16:34:35] 2025-11-21 15:30:50,935 | INFO     | current chi2=1.9505340188741622 (change=1.6004048457963698 %)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,935 | INFO     | right removable region: 900
[2025-11-21 16:34:35] 2025-11-21 15:30:50,936 | INFO     | sum of square deviations: 230601691142.5
[2025-11-21 16:34:35] 2025-11-21 15:30:50,954 | INFO     | sum of deviations: 506581113955.50006
[2025-11-21 16:34:35] 2025-11-21 15:30:50,954 | INFO     | mean x: 1763711402.5
[2025-11-21 16:34:35] 2025-11-21 15:30:50,954 | INFO     | mean y: 2271836.0430463576
[2025-11-21 16:34:35] 2025-11-21 15:30:50,954 | INFO     | intersect: -3872213570.147462
[2025-11-21 16:34:35] 2025-11-21 15:30:50,955 | INFO     | chi2: 2.6890587227253393
[2025-11-21 16:34:35] 2025-11-21 15:30:50,955 | INFO     | current chi2=2.6890587227253393 (change=40.24224945281819 %)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,957 | INFO     | sum of square deviations: 226804810650.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,975 | INFO     | sum of deviations: 493492349109.9999
[2025-11-21 16:34:35] 2025-11-21 15:30:50,975 | INFO     | mean x: 1763711555.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,975 | INFO     | mean y: 2272361.5682574916
[2025-11-21 16:34:35] 2025-11-21 15:30:50,975 | INFO     | intersect: -3835292441.1137652
[2025-11-21 16:34:35] 2025-11-21 15:30:50,976 | INFO     | chi2: 2.6881827418008357
[2025-11-21 16:34:35] 2025-11-21 15:30:50,976 | INFO     | current chi2=2.6881827418008357 (change=0.032575745449537216 %)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,976 | INFO     | left removable region: 20
[2025-11-21 16:34:35] 2025-11-21 15:30:50,978 | INFO     | sum of square deviations: 211312836460.0
[2025-11-21 16:34:35] 2025-11-21 15:30:50,995 | INFO     | sum of deviations: 648001398323.0001
[2025-11-21 16:34:35] 2025-11-21 15:30:50,995 | INFO     | mean x: 1763711524.5
[2025-11-21 16:34:35] 2025-11-21 15:30:50,995 | INFO     | mean y: 2282937.8613636363
[2025-11-21 16:34:35] 2025-11-21 15:30:50,995 | INFO     | intersect: -5406226801.823716
[2025-11-21 16:34:35] 2025-11-21 15:30:50,996 | INFO     | chi2: 0.09890677232824995
[2025-11-21 16:34:35] 2025-11-21 15:30:50,996 | INFO     | current memory leak: 3.07 B/s (using 880 data points, chi2=0.10)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,998 | INFO     | could have reported an average CPU frequency of 2696 MHz (34 samples)
[2025-11-21 16:34:35] 2025-11-21 15:30:50,998 | INFO     | ..............................
[2025-11-21 16:34:35] 2025-11-21 15:30:50,998 | INFO     | . Timing measurements:
[2025-11-21 16:34:35] 2025-11-21 15:30:50,998 | INFO     | . get job = 0 s
[2025-11-21 16:34:35] 2025-11-21 15:30:50,999 | INFO     | . initial setup = 1 s
[2025-11-21 16:34:35] 2025-11-21 15:30:50,999 | INFO     | . payload setup = 9 s
[2025-11-21 16:34:35] 2025-11-21 15:30:50,999 | INFO     | . stage-in = 0 s
[2025-11-21 16:34:35] 2025-11-21 15:30:50,999 | INFO     | . payload execution = 55549 s
[2025-11-21 16:34:35] 2025-11-21 15:30:50,999 | INFO     | . stage-out = 2 s
[2025-11-21 16:34:35] 2025-11-21 15:30:50,999 | INFO     | . log creation = 0 s
[2025-11-21 16:34:35] 2025-11-21 15:30:50,999 | INFO     | ..............................
[2025-11-21 16:34:35] 2025-11-21 15:30:51,415 | INFO     | 
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | job summary report
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | --------------------------------------------------
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | PanDA job id: 6892522315
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | task id: 47493029
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | errors: (none)
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | pilot state: finished 
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | transexitcode: 0
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | exeerrorcode: 0
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | exeerrordiag: 
[2025-11-21 16:34:35] 2025-11-21 15:30:51,416 | INFO     | exitcode: 0
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | exitmsg: OK
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | cpuconsumptiontime: 220115 s
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | nevents: 1000
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | neventsw: 0
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | pid: 645160
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | pgrp: 645160
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | corecount: 4
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | event service: False
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | sizes: {0: 2298804, 1: 2298804, 7: 2299094, 11: 2299122, 55562: 2352012, 55564: 2361030, 55565: 2361214, 55572: 2361460}
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | --------------------------------------------------
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | 
[2025-11-21 16:34:35] 2025-11-21 15:30:51,417 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/1
[2025-11-21 16:34:35] 2025-11-21 15:30:51,450 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,450 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,450 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,450 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,453 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,453 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,454 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 16:34:35] 2025-11-21 15:30:51,455 | INFO     | job 6892522315 has completed (purged errors)
[2025-11-21 16:34:35] 2025-11-21 15:30:51,455 | INFO     | overall cleanup function is called
[2025-11-21 16:34:35] 2025-11-21 15:30:52,471 | INFO     | --- collectZombieJob: --- 10, [645160]
[2025-11-21 16:34:35] 2025-11-21 15:30:52,471 | INFO     | zombie collector waiting for pid 645160
[2025-11-21 16:34:35] 2025-11-21 15:30:52,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 16:34:35] 2025-11-21 15:30:52,471 | INFO     | collected zombie processes
[2025-11-21 16:34:35] 2025-11-21 15:30:52,471 | INFO     | will attempt to kill all subprocesses of pid=645160
[2025-11-21 16:34:35] 2025-11-21 15:30:53,176 | INFO     | process IDs to be killed: [645160] (in reverse order)
[2025-11-21 16:34:35] 2025-11-21 15:30:53,414 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 16:34:35] 2025-11-21 15:30:53,415 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 16:34:35] 2025-11-21 15:30:53,443 | INFO     | did not find any defunct processes belonging to 645160
[2025-11-21 16:34:35] 2025-11-21 15:30:53,474 | INFO     | did not find any defunct processes belonging to 645160
[2025-11-21 16:34:35] 2025-11-21 15:30:53,475 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 16:34:35] 2025-11-21 15:30:53,476 | INFO     | ready for new job
[2025-11-21 16:34:35] 2025-11-21 15:30:53,476 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 16:34:35] 2025-11-21 15:30:53,482 | INFO     | ***************************************
[2025-11-21 16:34:35] 2025-11-21 15:30:53,482 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 16:34:35] 2025-11-21 15:30:53,482 | INFO     | ***************************************
[2025-11-21 16:34:35] 2025-11-21 15:30:53,482 | INFO     | 
[2025-11-21 16:34:35] 2025-11-21 15:30:53,490 | INFO     | architecture information:
[2025-11-21 16:34:35] 2025-11-21 15:30:53,491 | INFO     | executing command: cat /etc/os-release
[2025-11-21 16:34:35] 2025-11-21 15:30:53,511 | INFO     | cat /etc/os-release:
[2025-11-21 16:34:35] NAME="CentOS Linux"
[2025-11-21 16:34:35] VERSION="7 (Core)"
[2025-11-21 16:34:35] ID="centos"
[2025-11-21 16:34:35] ID_LIKE="rhel fedora"
[2025-11-21 16:34:35] VERSION_ID="7"
[2025-11-21 16:34:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 16:34:35] ANSI_COLOR="0;31"
[2025-11-21 16:34:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 16:34:35] HOME_URL="https://www.centos.org/"
[2025-11-21 16:34:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 16:34:35] 
[2025-11-21 16:34:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 16:34:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 16:34:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 16:34:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 16:34:35] 
[2025-11-21 16:34:35] 2025-11-21 15:30:53,511 | INFO     | ***************************************
[2025-11-21 16:34:35] 2025-11-21 15:30:54,014 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/1
[2025-11-21 16:34:35] 2025-11-21 15:30:54,038 | INFO     | sufficient remaining disk space (3316677345280 B)
[2025-11-21 16:34:35] 2025-11-21 15:30:54,039 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 16:34:35] 2025-11-21 15:30:54,039 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 16:34:35] 2025-11-21 15:30:54,039 | INFO     | update_server=False
[2025-11-21 16:34:35] 2025-11-21 15:30:54,039 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 16:34:35] 2025-11-21 15:30:54,040 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 16:34:35] 2025-11-21 15:30:54,263 | INFO     | all payload control threads have been joined
[2025-11-21 16:34:35] 2025-11-21 15:30:54,327 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:34:35] 2025-11-21 15:30:54,327 | INFO     | aborting loop
[2025-11-21 16:34:35] 2025-11-21 15:30:54,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 16:34:35] 2025-11-21 15:30:54,971 | INFO     | all data control threads have been joined
[2025-11-21 16:34:35] 2025-11-21 15:30:55,045 | INFO     | [job] retrieve thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:55,065 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:55,268 | INFO     | [payload] control thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:55,332 | INFO     | [job] job monitor thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:55,402 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:55,524 | INFO     | [payload] failed_post thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:55,581 | INFO     | all job control threads have been joined
[2025-11-21 16:34:35] 2025-11-21 15:30:55,976 | INFO     | [data] control thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:55,994 | INFO     | [payload] validate_post thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:56,045 | INFO     | [data] copytool_out thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:56,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:34:35] 2025-11-21 15:30:56,171 | INFO     | [job] validate thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:56,196 | INFO     | [data] copytool_in thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:56,402 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:56,503 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:56,587 | INFO     | [job] control thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:57,107 | INFO     | [job] queue monitor thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:30:58,761 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 16:34:35] 2025-11-21 15:31:23,893 | INFO     | PID=637829 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:34:35] 2025-11-21 15:31:23,894 | INFO     | .. there are 8 such processes running
[2025-11-21 16:34:35] 2025-11-21 15:31:23,894 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 16:34:35] 2025-11-21 15:31:23,894 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 16:34:35] 2025-11-21 15:31:23,894 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 16:34:35] 2025-11-21 15:31:50,397 | INFO     | [monitor] cgroup control has ended
[2025-11-21 16:34:35] 2025-11-21 15:31:51,302 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22583816095552)>', '<ExcThread(monitor, started 22583575537408)>']
[2025-11-21 16:34:35] 2025-11-21 15:31:52,022 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 16:34:35] 2025-11-21 15:31:52,022 | INFO     | [monitor] control thread has ended
[2025-11-21 16:34:35] 2025-11-21 15:31:56,308 | INFO     | all workflow threads have been joined
[2025-11-21 16:34:35] 2025-11-21 15:31:56,308 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 16:34:35] 2025-11-21 15:31:56,308 | INFO     | traces error code: 0
[2025-11-21 16:34:35] 2025-11-21 15:31:56,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 16:34:35] 2025-11-21 15:31:56,445 [wrapper] ==== pilot stdout END ====
[2025-11-21 16:34:35] 2025-11-21 15:31:56,449 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 16:34:35] 2025-11-21 15:31:56,453 [wrapper] pilotpid: 637829
[2025-11-21 16:34:35] 2025-11-21 15:31:56,456 [wrapper] Pilot exit status: 0
[2025-11-21 16:34:35] 2025-11-21 15:31:56,470 [wrapper] pandaids: 6892522315
[2025-11-21 16:34:35] 2025-11-21 15:31:56,656 [wrapper] cleanup supervisor_pilot 1925853 637830
[2025-11-21 16:34:35] 2025-11-21 15:31:56,660 [wrapper] Test setup, not cleaning
[2025-11-21 16:34:35] 2025-11-21 15:31:56,664 [wrapper] apfmon messages muted
[2025-11-21 16:34:35] 2025-11-21 15:31:56,668 [wrapper] ==== wrapper stdout END ====
[2025-11-21 16:34:35] 2025-11-21 15:31:56,672 [wrapper] ==== wrapper stderr END ====
[2025-11-21 16:34:35]  *** Error codes and diagnostics ***
[2025-11-21 16:34:35]     "exeErrorCode": 0,
[2025-11-21 16:34:35]     "exeErrorDiag": "",
[2025-11-21 16:34:35]     "pilotErrorCode": 0,
[2025-11-21 16:34:35]     "pilotErrorDiag": "",
[2025-11-21 16:34:35]  *** Listing of results directory ***
[2025-11-21 16:34:35] total 1324424
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:04 queuedata.json
[2025-11-21 16:34:35] -rwx------ 1 boinc boinc     36292 Nov 19 08:05 runpilot2-wrapper.sh
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc       100 Nov 20 23:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 16:34:35] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 23:46 run_atlas
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc       105 Nov 20 23:46 job.xml
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc      6686 Nov 21 01:04 init_data.xml
[2025-11-21 16:34:35] -rw-r--r-- 2 boinc boinc 410745570 Nov 21 01:04 EVNT.47493027._000024.pool.root.1
[2025-11-21 16:34:35] -rw-r--r-- 2 boinc boinc     15120 Nov 21 01:04 start_atlas.sh
[2025-11-21 16:34:35] drwxrwx--x 2 boinc boinc      4096 Nov 21 01:04 shared
[2025-11-21 16:34:35] -rw-r--r-- 2 boinc boinc    590105 Nov 21 01:04 input.tar.gz
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc         0 Nov 21 01:04 boinc_lockfile
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc      2771 Nov 21 01:04 pandaJob.out
[2025-11-21 16:34:35] -rw------- 1 boinc boinc    989817 Nov 21 01:04 agis_schedconf.cvmfs.json
[2025-11-21 16:34:35] drwx------ 5 boinc boinc      4096 Nov 21 01:04 pilot3
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc       532 Nov 21 16:24 boinc_task_state.xml
[2025-11-21 16:34:35] -rw------- 1 boinc boinc 922857815 Nov 21 16:30 HITS.47493029._000305.pool.root.1
[2025-11-21 16:34:35] -rw------- 1 boinc boinc        95 Nov 21 16:30 pilot_heartbeat.json
[2025-11-21 16:34:35] -rw------- 1 boinc boinc      1038 Nov 21 16:30 memory_monitor_summary.json
[2025-11-21 16:34:35] -rw------- 1 boinc boinc   1526164 Nov 21 16:30 agis_ddmendpoints.agis.ALL.json
[2025-11-21 16:34:35] -rw------- 1 boinc boinc   1654536 Nov 21 16:30 log.47493029._000305.job.log.tgz.1
[2025-11-21 16:34:35] -rw------- 1 boinc boinc      8592 Nov 21 16:30 heartbeat.json
[2025-11-21 16:34:35] -rw------- 1 boinc boinc      4835 Nov 21 16:31 pilotlog.txt
[2025-11-21 16:34:35] -rw------- 1 boinc boinc   7688245 Nov 21 16:31 log.47493029._000305.job.log.1
[2025-11-21 16:34:35] -rw------- 1 boinc boinc       353 Nov 21 16:31 output.list
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc       620 Nov 21 16:31 runtime_log
[2025-11-21 16:34:35] -rw------- 1 boinc boinc   9359360 Nov 21 16:31 result.tar.gz
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc      9085 Nov 21 16:31 runtime_log.err
[2025-11-21 16:34:35] -rw------- 1 boinc boinc       670 Nov 21 16:31 R6rNDm6Qrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJpFKDmhuwnCn.diag
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc      8192 Nov 21 16:34 boinc_mmap_file
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc        28 Nov 21 16:34 wrapper_checkpoint.txt
[2025-11-21 16:34:35] -rw-r--r-- 1 boinc boinc     21059 Nov 21 16:34 stderr.txt
[2025-11-21 16:34:35] HITS file was successfully produced:
[2025-11-21 16:34:35] -rw------- 1 boinc boinc 922857815 Nov 21 16:30 shared/HITS.pool.root.1
[2025-11-21 16:34:35]  *** Contents of shared directory: ***
[2025-11-21 16:34:35] total 1312096
[2025-11-21 16:34:35] -rw-r--r-- 2 boinc boinc 410745570 Nov 21 01:04 ATLAS.root_0
[2025-11-21 16:34:35] -rw-r--r-- 2 boinc boinc     15120 Nov 21 01:04 start_atlas.sh
[2025-11-21 16:34:35] -rw-r--r-- 2 boinc boinc    590105 Nov 21 01:04 input.tar.gz
[2025-11-21 16:34:35] -rw------- 1 boinc boinc 922857815 Nov 21 16:30 HITS.pool.root.1
[2025-11-21 16:34:35] -rw------- 1 boinc boinc   9359360 Nov 21 16:31 result.tar.gz
16:34:37 (633807): run_atlas exited; CPU time 222879.993403
16:34:37 (633807): called boinc_finish(0)

</stderr_txt>
]]>

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