Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:20:59 (499825): wrapper (7.7.26015): starting
00:20:59 (499825): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 00:20:59] Arguments: --nthreads 12
[2025-11-21 00:20:59] Threads: 12
[2025-11-21 00:20:59] Checking for CVMFS
[2025-11-21 00:20:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:20:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:20:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:20:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:20:59] 2.13.3.0 9330 19236 305428 153101 2 89 37374446 46080000 7552 130560 0 124887079 99.885 41895712 27546 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-21 00:20:59] CVMFS is ok
[2025-11-21 00:20:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:20:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:20:59] Further information can be found at the LHC@home message board.
[2025-11-21 00:20:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:20:59] Checking for apptainer binary...
[2025-11-21 00:20:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:20:59] Running /usr/bin/apptainer --version
[2025-11-21 00:20:59] apptainer version 1.4.3-1.el9
[2025-11-21 00:20:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:21:00] mff2102.farm.particle.cz
[2025-11-21 00:21:00] apptainer works
[2025-11-21 00:21:00] Set ATHENA_PROC_NUMBER=12
[2025-11-21 00:21:00] Set ATHENA_CORE_NUMBER=12
[2025-11-21 00:21:00] Starting ATLAS job with PandaID=6892528459
[2025-11-21 00:21:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 06:02:02]  *** The last 200 lines of the pilot log: ***
[2025-11-21 06:02:02] 2025-11-21 05:01:28,760 | INFO     | monitor loop #1424: job 0:6892528459 is in state 'finished'
[2025-11-21 06:02:02] 2025-11-21 05:01:28,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,731 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 06:02:02] 2025-11-21 05:01:29,746 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2754.1073125
[2025-11-21 06:02:02] 2025-11-21 05:01:29,764 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6892528459/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,764 | INFO     | extracted standard info from prmon json
[2025-11-21 06:02:02] 2025-11-21 05:01:29,765 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 06:02:02] 2025-11-21 05:01:29,765 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 06:02:02] 2025-11-21 05:01:29,771 | INFO     | fitting pss+swap vs Time
[2025-11-21 06:02:02] 2025-11-21 05:01:29,771 | INFO     | sum of square deviations: 11553475145.48809
[2025-11-21 06:02:02] 2025-11-21 05:01:29,774 | INFO     | sum of deviations: 208896839607.16168
[2025-11-21 06:02:02] 2025-11-21 05:01:29,774 | INFO     | mean x: 1763691060.5059881
[2025-11-21 06:02:02] 2025-11-21 05:01:29,775 | INFO     | mean y: 3474889.4191616764
[2025-11-21 06:02:02] 2025-11-21 05:01:29,775 | INFO     | intersect: -31885587400.811745
[2025-11-21 06:02:02] 2025-11-21 05:01:29,775 | INFO     | chi2: 5.144203716722786
[2025-11-21 06:02:02] 2025-11-21 05:01:29,776 | INFO     | sum of square deviations: 11042433152.851074
[2025-11-21 06:02:02] 2025-11-21 05:01:29,778 | INFO     | sum of deviations: 327871048214.6594
[2025-11-21 06:02:02] 2025-11-21 05:01:29,779 | INFO     | mean x: 1763690908.0212767
[2025-11-21 06:02:02] 2025-11-21 05:01:29,779 | INFO     | mean y: 3510345.048632219
[2025-11-21 06:02:02] 2025-11-21 05:01:29,779 | INFO     | intersect: -52363860028.41813
[2025-11-21 06:02:02] 2025-11-21 05:01:29,779 | INFO     | chi2: 2.558943771573584
[2025-11-21 06:02:02] 2025-11-21 05:01:29,779 | INFO     | current chi2=2.558943771573584 (change=50.25578471445512 %)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,780 | INFO     | sum of square deviations: 10546654002.691284
[2025-11-21 06:02:02] 2025-11-21 05:01:29,783 | INFO     | sum of deviations: 357221654140.8887
[2025-11-21 06:02:02] 2025-11-21 05:01:29,783 | INFO     | mean x: 1763690755.5308642
[2025-11-21 06:02:02] 2025-11-21 05:01:29,783 | INFO     | mean y: 3519275.361111111
[2025-11-21 06:02:02] 2025-11-21 05:01:29,783 | INFO     | intersect: -59733770762.11987
[2025-11-21 06:02:02] 2025-11-21 05:01:29,783 | INFO     | chi2: 2.106708922797747
[2025-11-21 06:02:02] 2025-11-21 05:01:29,784 | INFO     | current chi2=2.106708922797747 (change=17.67271535230889 %)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,784 | INFO     | right removable region: 323
[2025-11-21 06:02:02] 2025-11-21 05:01:29,784 | INFO     | sum of square deviations: 11042268576.924023
[2025-11-21 06:02:02] 2025-11-21 05:01:29,787 | INFO     | sum of deviations: 108722097976.44373
[2025-11-21 06:02:02] 2025-11-21 05:01:29,787 | INFO     | mean x: 1763691213.0151975
[2025-11-21 06:02:02] 2025-11-21 05:01:29,787 | INFO     | mean y: 3504637.711246201
[2025-11-21 06:02:02] 2025-11-21 05:01:29,787 | INFO     | intersect: -17361786518.342705
[2025-11-21 06:02:02] 2025-11-21 05:01:29,788 | INFO     | chi2: 3.1416807815260492
[2025-11-21 06:02:02] 2025-11-21 05:01:29,788 | INFO     | current chi2=3.1416807815260492 (change=38.92775336029038 %)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,788 | INFO     | sum of square deviations: 10546445142.950558
[2025-11-21 06:02:02] 2025-11-21 05:01:29,791 | INFO     | sum of deviations: 84944400691.7593
[2025-11-21 06:02:02] 2025-11-21 05:01:29,791 | INFO     | mean x: 1763691365.5123458
[2025-11-21 06:02:02] 2025-11-21 05:01:29,791 | INFO     | mean y: 3511937.435185185
[2025-11-21 06:02:02] 2025-11-21 05:01:29,791 | INFO     | intersect: -14201815451.843128
[2025-11-21 06:02:02] 2025-11-21 05:01:29,792 | INFO     | chi2: 3.0922701292502497
[2025-11-21 06:02:02] 2025-11-21 05:01:29,792 | INFO     | current chi2=3.0922701292502497 (change=1.5727457915631606 %)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,792 | INFO     | left removable region: 20
[2025-11-21 06:02:02] 2025-11-21 05:01:29,793 | INFO     | sum of square deviations: 8625920341.524754
[2025-11-21 06:02:02] 2025-11-21 05:01:29,795 | INFO     | sum of deviations: 203952235771.8514
[2025-11-21 06:02:02] 2025-11-21 05:01:29,796 | INFO     | mean x: 1763691335.039604
[2025-11-21 06:02:02] 2025-11-21 05:01:29,796 | INFO     | mean y: 3567290.7623762377
[2025-11-21 06:02:02] 2025-11-21 05:01:29,796 | INFO     | intersect: -41697350031.78098
[2025-11-21 06:02:02] 2025-11-21 05:01:29,796 | INFO     | chi2: 0.009943010211732738
[2025-11-21 06:02:02] 2025-11-21 05:01:29,796 | INFO     | current memory leak: 23.64 B/s (using 303 data points, chi2=0.01)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,797 | INFO     | could have reported an average CPU frequency of 2728 MHz (15 samples)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,797 | INFO     | ..............................
[2025-11-21 06:02:02] 2025-11-21 05:01:29,797 | INFO     | . Timing measurements:
[2025-11-21 06:02:02] 2025-11-21 05:01:29,797 | INFO     | . get job = 0 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,797 | INFO     | . initial setup = 1 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,798 | INFO     | . payload setup = 7 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,798 | INFO     | . stage-in = 0 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,798 | INFO     | . payload execution = 20375 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,798 | INFO     | . stage-out = 2 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,798 | INFO     | . log creation = 0 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,798 | INFO     | ..............................
[2025-11-21 06:02:02] 2025-11-21 05:01:29,889 | INFO     | 
[2025-11-21 06:02:02] 2025-11-21 05:01:29,889 | INFO     | job summary report
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | --------------------------------------------------
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | PanDA job id: 6892528459
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | task id: 47493029
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | errors: (none)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | pilot state: finished 
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | transexitcode: 0
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | exeerrorcode: 0
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | exeerrordiag: 
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | exitcode: 0
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | exitmsg: OK
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | cpuconsumptiontime: 228651 s
[2025-11-21 06:02:02] 2025-11-21 05:01:29,890 | INFO     | nevents: 1000
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | neventsw: 0
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | pid: 513423
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | pgrp: 513423
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | corecount: 12
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | event service: False
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | sizes: {0: 2298791, 6: 2299053, 11: 2299081, 20386: 2333463, 20389: 2342459, 20393: 2342515, 20400: 2342889}
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | --------------------------------------------------
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | 
[2025-11-21 06:02:02] 2025-11-21 05:01:29,891 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2025-11-21 06:02:02] 2025-11-21 05:01:29,915 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,915 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,915 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,916 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,917 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,917 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 06:02:02] 2025-11-21 05:01:29,917 | INFO     | job 6892528459 has completed (purged errors)
[2025-11-21 06:02:02] 2025-11-21 05:01:29,917 | INFO     | overall cleanup function is called
[2025-11-21 06:02:02] 2025-11-21 05:01:30,942 | INFO     | --- collectZombieJob: --- 10, [513423]
[2025-11-21 06:02:02] 2025-11-21 05:01:30,942 | INFO     | zombie collector waiting for pid 513423
[2025-11-21 06:02:02] 2025-11-21 05:01:30,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 06:02:02] 2025-11-21 05:01:30,942 | INFO     | collected zombie processes
[2025-11-21 06:02:02] 2025-11-21 05:01:30,942 | INFO     | will attempt to kill all subprocesses of pid=513423
[2025-11-21 06:02:02] 2025-11-21 05:01:31,322 | INFO     | process IDs to be killed: [513423] (in reverse order)
[2025-11-21 06:02:02] 2025-11-21 05:01:31,441 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 06:02:02] 2025-11-21 05:01:31,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 06:02:02] 2025-11-21 05:01:31,455 | INFO     | did not find any defunct processes belonging to 513423
[2025-11-21 06:02:02] 2025-11-21 05:01:31,467 | INFO     | did not find any defunct processes belonging to 513423
[2025-11-21 06:02:02] 2025-11-21 05:01:31,468 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 06:02:02] 2025-11-21 05:01:31,469 | INFO     | ready for new job
[2025-11-21 06:02:02] 2025-11-21 05:01:31,469 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 06:02:02] 2025-11-21 05:01:31,471 | INFO     | ***************************************
[2025-11-21 06:02:02] 2025-11-21 05:01:31,472 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 06:02:02] 2025-11-21 05:01:31,472 | INFO     | ***************************************
[2025-11-21 06:02:02] 2025-11-21 05:01:31,472 | INFO     | 
[2025-11-21 06:02:02] 2025-11-21 05:01:31,478 | INFO     | architecture information:
[2025-11-21 06:02:02] 2025-11-21 05:01:31,479 | INFO     | executing command: cat /etc/os-release
[2025-11-21 06:02:02] 2025-11-21 05:01:31,498 | INFO     | cat /etc/os-release:
[2025-11-21 06:02:02] NAME="CentOS Linux"
[2025-11-21 06:02:02] VERSION="7 (Core)"
[2025-11-21 06:02:02] ID="centos"
[2025-11-21 06:02:02] ID_LIKE="rhel fedora"
[2025-11-21 06:02:02] VERSION_ID="7"
[2025-11-21 06:02:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 06:02:02] ANSI_COLOR="0;31"
[2025-11-21 06:02:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 06:02:02] HOME_URL="https://www.centos.org/"
[2025-11-21 06:02:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 06:02:02] 
[2025-11-21 06:02:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 06:02:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 06:02:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 06:02:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 06:02:02] 
[2025-11-21 06:02:02] 2025-11-21 05:01:31,498 | INFO     | ***************************************
[2025-11-21 06:02:02] 2025-11-21 05:01:32,001 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2025-11-21 06:02:02] 2025-11-21 05:01:32,023 | INFO     | sufficient remaining disk space (1668590600192 B)
[2025-11-21 06:02:02] 2025-11-21 05:01:32,023 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 06:02:02] 2025-11-21 05:01:32,023 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 06:02:02] 2025-11-21 05:01:32,023 | INFO     | update_server=False
[2025-11-21 06:02:02] 2025-11-21 05:01:32,024 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 06:02:02] 2025-11-21 05:01:32,188 | INFO     | all data control threads have been joined
[2025-11-21 06:02:02] 2025-11-21 05:01:32,269 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 06:02:02] 2025-11-21 05:01:32,269 | INFO     | aborting loop
[2025-11-21 06:02:02] 2025-11-21 05:01:32,507 | INFO     | all job control threads have been joined
[2025-11-21 06:02:02] 2025-11-21 05:01:32,671 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 06:02:02] 2025-11-21 05:01:32,812 | INFO     | all payload control threads have been joined
[2025-11-21 06:02:02] 2025-11-21 05:01:33,028 | INFO     | [job] retrieve thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,094 | INFO     | [data] copytool_in thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,194 | INFO     | [data] control thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,275 | INFO     | [job] job monitor thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,291 | INFO     | [payload] failed_post thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,438 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,515 | INFO     | [job] control thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,541 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 06:02:02] 2025-11-21 05:01:33,601 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,665 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,681 | INFO     | [payload] validate_post thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,817 | INFO     | [payload] control thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,961 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:33,992 | INFO     | [job] validate thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:34,678 | INFO     | [data] copytool_out thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:34,900 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 06:02:02] 2025-11-21 05:01:35,903 | INFO     | [job] queue monitor thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:37,548 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 06:02:02] 2025-11-21 05:01:46,444 | INFO     | [monitor] cgroup control has ended
[2025-11-21 06:02:02] 2025-11-21 05:01:46,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140605298296640)>', '<ExcThread(monitor, started 140604663125760)>']
[2025-11-21 06:02:02] 2025-11-21 05:01:51,516 | INFO     | all workflow threads have been joined
[2025-11-21 06:02:02] 2025-11-21 05:01:51,516 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 06:02:02] 2025-11-21 05:01:51,516 | INFO     | traces error code: 0
[2025-11-21 06:02:02] 2025-11-21 05:01:51,517 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 06:02:02] 2025-11-21 05:02:02,242 | INFO     | PID=503973 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 06:02:02] 2025-11-21 05:02:02,242 | INFO     | .. there are 9 such processes running
[2025-11-21 06:02:02] 2025-11-21 05:02:02,243 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 06:02:02] 2025-11-21 05:02:02,243 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 06:02:02] 2025-11-21 05:02:02,243 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 06:02:02] 2025-11-21 05:02:02,243 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 06:02:02] 2025-11-21 05:02:02,243 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 06:02:02] 2025-11-21 05:02:02,243 | INFO     | [monitor] control thread has ended
[2025-11-21 06:02:02] 2025-11-21 05:02:02,365 [wrapper] ==== pilot stdout END ====
[2025-11-21 06:02:02] 2025-11-21 05:02:02,370 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 06:02:02] 2025-11-21 05:02:02,373 [wrapper] pilotpid: 503973
[2025-11-21 06:02:02] 2025-11-21 05:02:02,377 [wrapper] Pilot exit status: 0
[2025-11-21 06:02:02] 2025-11-21 05:02:02,397 [wrapper] pandaids: 6892528459
[2025-11-21 06:02:02] 2025-11-21 05:02:02,485 [wrapper] cleanup supervisor_pilot  993992 503974
[2025-11-21 06:02:02] 2025-11-21 05:02:02,489 [wrapper] Test setup, not cleaning
[2025-11-21 06:02:02] 2025-11-21 05:02:02,493 [wrapper] apfmon messages muted
[2025-11-21 06:02:02] 2025-11-21 05:02:02,496 [wrapper] ==== wrapper stdout END ====
[2025-11-21 06:02:02] 2025-11-21 05:02:02,499 [wrapper] ==== wrapper stderr END ====
[2025-11-21 06:02:02]  *** Error codes and diagnostics ***
[2025-11-21 06:02:02]     "exeErrorCode": 0,
[2025-11-21 06:02:02]     "exeErrorDiag": "",
[2025-11-21 06:02:02]     "pilotErrorCode": 0,
[2025-11-21 06:02:02]     "pilotErrorDiag": "",
[2025-11-21 06:02:02]  *** Listing of results directory ***
[2025-11-21 06:02:02] total 1310576
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:10 queuedata.json
[2025-11-21 06:02:02] -rwx------ 1 boinc boinc     36292 Nov 19 08:10 runpilot2-wrapper.sh
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc       100 Nov 21 00:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 06:02:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 00:20 run_atlas
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc       105 Nov 21 00:20 job.xml
[2025-11-21 06:02:02] -rw-r--r-- 2 boinc boinc 409654716 Nov 21 00:20 EVNT.47493027._000170.pool.root.1
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc      6665 Nov 21 00:20 init_data.xml
[2025-11-21 06:02:02] -rw-r--r-- 2 boinc boinc     15120 Nov 21 00:20 start_atlas.sh
[2025-11-21 06:02:02] drwxrwx--x 2 boinc boinc      4096 Nov 21 00:20 shared
[2025-11-21 06:02:02] -rw-r--r-- 2 boinc boinc    590096 Nov 21 00:20 input.tar.gz
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc         0 Nov 21 00:20 boinc_lockfile
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc      2770 Nov 21 00:21 pandaJob.out
[2025-11-21 06:02:02] -rw------- 1 boinc boinc    989817 Nov 21 00:21 agis_schedconf.cvmfs.json
[2025-11-21 06:02:02] drwx------ 5 boinc boinc      4096 Nov 21 00:21 pilot3
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc       533 Nov 21 05:51 boinc_task_state.xml
[2025-11-21 06:02:02] -rw------- 1 boinc boinc 918603514 Nov 21 06:00 HITS.47493029._001651.pool.root.1
[2025-11-21 06:02:02] -rw------- 1 boinc boinc      1035 Nov 21 06:01 memory_monitor_summary.json
[2025-11-21 06:02:02] -rw------- 1 boinc boinc   1526164 Nov 21 06:01 agis_ddmendpoints.agis.ALL.json
[2025-11-21 06:02:02] -rw------- 1 boinc boinc   2079523 Nov 21 06:01 log.47493029._001651.job.log.tgz.1
[2025-11-21 06:02:02] -rw------- 1 boinc boinc      8611 Nov 21 06:01 heartbeat.json
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc      8192 Nov 21 06:01 boinc_mmap_file
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc        29 Nov 21 06:01 wrapper_checkpoint.txt
[2025-11-21 06:02:02] -rw------- 1 boinc boinc        95 Nov 21 06:02 pilot_heartbeat.json
[2025-11-21 06:02:02] -rw------- 1 boinc boinc       891 Nov 21 06:02 pilotlog.txt
[2025-11-21 06:02:02] -rw------- 1 boinc boinc   2842832 Nov 21 06:02 log.47493029._001651.job.log.1
[2025-11-21 06:02:02] -rw------- 1 boinc boinc       353 Nov 21 06:02 output.list
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc       620 Nov 21 06:02 runtime_log
[2025-11-21 06:02:02] -rw------- 1 boinc boinc   4945920 Nov 21 06:02 result.tar.gz
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc      8765 Nov 21 06:02 runtime_log.err
[2025-11-21 06:02:02] -rw------- 1 boinc boinc       671 Nov 21 06:02 C0fKDm3Vrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6wFKDm37JL8m.diag
[2025-11-21 06:02:02] -rw-r--r-- 1 boinc boinc     21303 Nov 21 06:02 stderr.txt
[2025-11-21 06:02:02] HITS file was successfully produced:
[2025-11-21 06:02:02] -rw------- 1 boinc boinc 918603514 Nov 21 06:00 shared/HITS.pool.root.1
[2025-11-21 06:02:02]  *** Contents of shared directory: ***
[2025-11-21 06:02:02] total 1302568
[2025-11-21 06:02:02] -rw-r--r-- 2 boinc boinc 409654716 Nov 21 00:20 ATLAS.root_0
[2025-11-21 06:02:02] -rw-r--r-- 2 boinc boinc     15120 Nov 21 00:20 start_atlas.sh
[2025-11-21 06:02:02] -rw-r--r-- 2 boinc boinc    590096 Nov 21 00:20 input.tar.gz
[2025-11-21 06:02:02] -rw------- 1 boinc boinc 918603514 Nov 21 06:00 HITS.pool.root.1
[2025-11-21 06:02:02] -rw------- 1 boinc boinc   4945920 Nov 21 06:02 result.tar.gz
06:02:04 (499825): run_atlas exited; CPU time 228329.372093
06:02:04 (499825): called boinc_finish(0)

</stderr_txt>
]]>

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