Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:02:54 (5244): wrapper (7.7.26015): starting
22:02:54 (5244): wrapper: running run_atlas (--nthreads 8)
[2025-11-22 22:02:54] Arguments: --nthreads 8
[2025-11-22 22:02:54] Threads: 8
[2025-11-22 22:02:54] Checking for CVMFS
[2025-11-22 22:02:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 22:02:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 22:02:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 22:02:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 22:02:57] 2.11.2.0 18594 78736 92776 153184 1 85 21168130 25165824 4632 130560 2 23225534 99.899 12005998 2175 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-22 22:02:57] CVMFS is ok
[2025-11-22 22:02:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 22:02:57] Checking for apptainer binary...
[2025-11-22 22:02:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 22:02:57] Running /usr/bin/apptainer --version
[2025-11-22 22:02:57] apptainer version 1.3.2-1.el7
[2025-11-22 22:02:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 22:03:18] cg-vwn256.simple-grid.lan
[2025-11-22 22:03:18] apptainer works
[2025-11-22 22:03:18] Set ATHENA_PROC_NUMBER=8
[2025-11-22 22:03:18] Set ATHENA_CORE_NUMBER=8
[2025-11-22 22:03:19] Starting ATLAS job with PandaID=6892549571
[2025-11-22 22:03:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 23:21:07]  *** The last 200 lines of the pilot log: ***
[2025-11-23 23:21:07] 2025-11-23 22:19:48,148 | INFO     | time since job start (90751s) is within the limit (172800.0s)
[2025-11-23 23:21:07] 2025-11-23 22:19:50,154 | INFO     | time since job start (90753s) is within the limit (172800.0s)
[2025-11-23 23:21:07] 2025-11-23 22:19:50,207 | INFO     | monitor loop #6099: job 0:6892549571 is in state 'finished'
[2025-11-23 23:21:07] 2025-11-23 22:19:50,208 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:21:07] 2025-11-23 22:19:52,163 | INFO     | time since job start (90755s) is within the limit (172800.0s)
[2025-11-23 23:21:07] 2025-11-23 22:19:52,716 | INFO     | monitor loop #6100: job 0:6892549571 is in state 'finished'
[2025-11-23 23:21:07] 2025-11-23 22:19:52,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:21:07] 2025-11-23 22:19:54,170 | INFO     | time since job start (90757s) is within the limit (172800.0s)
[2025-11-23 23:21:07] 2025-11-23 22:19:55,220 | INFO     | monitor loop #6101: job 0:6892549571 is in state 'finished'
[2025-11-23 23:21:07] 2025-11-23 22:19:55,221 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:21:07] 2025-11-23 22:19:56,177 | INFO     | time since job start (90759s) is within the limit (172800.0s)
[2025-11-23 23:21:07] 2025-11-23 22:19:57,607 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 23:21:07] 2025-11-23 22:19:57,608 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-23 23:21:07] 2025-11-23 22:19:57,610 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6892549571/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 23:21:07] 2025-11-23 22:19:57,610 | INFO     | extracted standard info from prmon json
[2025-11-23 23:21:07] 2025-11-23 22:19:57,610 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 23:21:07] 2025-11-23 22:19:57,610 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 23:21:07] 2025-11-23 22:19:57,638 | INFO     | fitting pss+swap vs Time
[2025-11-23 23:21:07] 2025-11-23 22:19:57,640 | INFO     | sum of square deviations: 1001155142410.7019
[2025-11-23 23:21:07] 2025-11-23 22:19:57,698 | INFO     | sum of deviations: 3883864968835.355
[2025-11-23 23:21:07] 2025-11-23 22:19:57,698 | INFO     | mean x: 1763891203.7713125
[2025-11-23 23:21:07] 2025-11-23 22:19:57,698 | INFO     | mean y: 2842935.885656292
[2025-11-23 23:21:07] 2025-11-23 22:19:57,699 | INFO     | intersect: -6839967898.2756195
[2025-11-23 23:21:07] 2025-11-23 22:19:57,700 | INFO     | chi2: 22.23815655478617
[2025-11-23 23:21:07] 2025-11-23 22:19:57,703 | INFO     | sum of square deviations: 991029469820.0951
[2025-11-23 23:21:07] 2025-11-23 22:19:57,737 | INFO     | monitor loop #6102: job 0:6892549571 is in state 'finished'
[2025-11-23 23:21:07] 2025-11-23 22:19:57,738 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 23:21:07] 2025-11-23 22:19:57,780 | INFO     | sum of deviations: 4373065347022.4536
[2025-11-23 23:21:07] 2025-11-23 22:19:57,780 | INFO     | mean x: 1763891051.2756279
[2025-11-23 23:21:07] 2025-11-23 22:19:57,780 | INFO     | mean y: 2850302.424983028
[2025-11-23 23:21:07] 2025-11-23 22:19:57,780 | INFO     | intersect: -7780582044.60374
[2025-11-23 23:21:07] 2025-11-23 22:19:57,782 | INFO     | chi2: 19.088028709155964
[2025-11-23 23:21:07] 2025-11-23 22:19:57,782 | INFO     | current chi2=19.088028709155964 (change=14.165418063630927 %)
[2025-11-23 23:21:07] 2025-11-23 22:19:57,782 | INFO     | right removable region: 1472
[2025-11-23 23:21:07] 2025-11-23 22:19:57,784 | INFO     | sum of square deviations: 991028323630.0955
[2025-11-23 23:21:07] 2025-11-23 22:19:57,859 | INFO     | sum of deviations: 3260345436255.869
[2025-11-23 23:21:07] 2025-11-23 22:19:57,859 | INFO     | mean x: 1763891356.2756279
[2025-11-23 23:21:07] 2025-11-23 22:19:57,859 | INFO     | mean y: 2852325.1826205025
[2025-11-23 23:21:07] 2025-11-23 22:19:57,859 | INFO     | intersect: -5800105063.985764
[2025-11-23 23:21:07] 2025-11-23 22:19:57,861 | INFO     | chi2: 17.429030186849165
[2025-11-23 23:21:07] 2025-11-23 22:19:57,862 | INFO     | current chi2=17.429030186849165 (change=21.625562155249636 %)
[2025-11-23 23:21:07] 2025-11-23 22:19:57,862 | INFO     | left removable region: 10
[2025-11-23 23:21:07] 2025-11-23 22:19:57,864 | INFO     | sum of square deviations: 968991535744.5618
[2025-11-23 23:21:07] 2025-11-23 22:19:57,926 | INFO     | sum of deviations: 3338578593634.8906
[2025-11-23 23:21:07] 2025-11-23 22:19:57,927 | INFO     | mean x: 1763891325.7852256
[2025-11-23 23:21:07] 2025-11-23 22:19:57,927 | INFO     | mean y: 2869738.939124487
[2025-11-23 23:21:07] 2025-11-23 22:19:57,927 | INFO     | intersect: -6074469024.644468
[2025-11-23 23:21:07] 2025-11-23 22:19:57,929 | INFO     | chi2: 9.892112310471612
[2025-11-23 23:21:07] 2025-11-23 22:19:57,929 | INFO     | current memory leak: 3.45 B/s (using 1462 data points, chi2=9.89)
[2025-11-23 23:21:07] 2025-11-23 22:19:57,931 | INFO     | could have reported an average CPU frequency of 1999 MHz (50 samples)
[2025-11-23 23:21:07] 2025-11-23 22:19:57,931 | INFO     | ..............................
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . Timing measurements:
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . get job = 0 s
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . initial setup = 6 s
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . payload setup = 171 s
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . stage-in = 0 s
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . payload execution = 90288 s
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . stage-out = 6 s
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | . log creation = 2 s
[2025-11-23 23:21:07] 2025-11-23 22:19:57,932 | INFO     | ..............................
[2025-11-23 23:21:07] 2025-11-23 22:19:58,049 | INFO     | 
[2025-11-23 23:21:07] 2025-11-23 22:19:58,049 | INFO     | job summary report
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | --------------------------------------------------
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | PanDA job id: 6892549571
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | task id: 47493029
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | errors: (none)
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | pilot state: finished 
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | transexitcode: 0
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | exeerrorcode: 0
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | exeerrordiag: 
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | exitcode: 0
[2025-11-23 23:21:07] 2025-11-23 22:19:58,050 | INFO     | exitmsg: OK
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | cpuconsumptiontime: 334760 s
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | nevents: 1000
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | neventsw: 0
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | pid: 15572
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | pgrp: 15572
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | corecount: 8
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | event service: False
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | sizes: {0: 2298570, 1: 2298825, 2: 2298825, 12: 2298853, 23: 2298881, 34: 2298909, 45: 2299065, 55: 2299093, 66: 2299121, 77: 2299149, 88: 2299205, 95: 2299775, 98
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | --------------------------------------------------
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | 
[2025-11-23 23:21:07] 2025-11-23 22:19:58,051 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-23 23:21:07] 2025-11-23 22:19:58,186 | INFO     | time since job start (90761s) is within the limit (172800.0s)
[2025-11-23 23:21:07] 2025-11-23 22:19:58,422 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,423 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,424 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 23:21:07] 2025-11-23 22:19:58,425 | INFO     | job 6892549571 has completed (purged errors)
[2025-11-23 23:21:07] 2025-11-23 22:19:58,425 | INFO     | overall cleanup function is called
[2025-11-23 23:21:07] 2025-11-23 22:19:59,331 | INFO     | PID=9008 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 23:21:07] 2025-11-23 22:19:59,331 | INFO     | .. there are 9 such processes running
[2025-11-23 23:21:07] 2025-11-23 22:19:59,442 | INFO     | --- collectZombieJob: --- 10, [15572]
[2025-11-23 23:21:07] 2025-11-23 22:19:59,442 | INFO     | zombie collector waiting for pid 15572
[2025-11-23 23:21:07] 2025-11-23 22:19:59,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 23:21:07] 2025-11-23 22:19:59,443 | INFO     | collected zombie processes
[2025-11-23 23:21:07] 2025-11-23 22:19:59,443 | INFO     | will attempt to kill all subprocesses of pid=15572
[2025-11-23 23:21:07] 2025-11-23 22:19:59,602 | INFO     | process IDs to be killed: [15572] (in reverse order)
[2025-11-23 23:21:07] 2025-11-23 22:20:00,592 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 23:21:07] 2025-11-23 22:20:00,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 23:21:07] 2025-11-23 22:20:00,595 | INFO     | did not find any defunct processes belonging to 15572
[2025-11-23 23:21:07] 2025-11-23 22:20:00,599 | INFO     | did not find any defunct processes belonging to 15572
[2025-11-23 23:21:07] 2025-11-23 22:20:00,643 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 23:21:07] 2025-11-23 22:20:00,644 | INFO     | ready for new job
[2025-11-23 23:21:07] 2025-11-23 22:20:00,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 23:21:07] 2025-11-23 22:20:00,650 | INFO     | ***************************************
[2025-11-23 23:21:07] 2025-11-23 22:20:00,651 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 23:21:07] 2025-11-23 22:20:00,651 | INFO     | ***************************************
[2025-11-23 23:21:07] 2025-11-23 22:20:00,651 | INFO     | 
[2025-11-23 23:21:07] 2025-11-23 22:20:00,651 | INFO     | pilot is running in a VM
[2025-11-23 23:21:07] 2025-11-23 22:20:00,652 | INFO     | architecture information:
[2025-11-23 23:21:07] 2025-11-23 22:20:00,657 | INFO     | executing command: cat /etc/os-release
[2025-11-23 23:21:07] 2025-11-23 22:20:00,819 | INFO     | cat /etc/os-release:
[2025-11-23 23:21:07] NAME="CentOS Linux"
[2025-11-23 23:21:07] VERSION="7 (Core)"
[2025-11-23 23:21:07] ID="centos"
[2025-11-23 23:21:07] ID_LIKE="rhel fedora"
[2025-11-23 23:21:07] VERSION_ID="7"
[2025-11-23 23:21:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 23:21:07] ANSI_COLOR="0;31"
[2025-11-23 23:21:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 23:21:07] HOME_URL="https://www.centos.org/"
[2025-11-23 23:21:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 23:21:07] 
[2025-11-23 23:21:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 23:21:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 23:21:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 23:21:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 23:21:07] 
[2025-11-23 23:21:07] 2025-11-23 22:20:00,819 | INFO     | ***************************************
[2025-11-23 23:21:07] 2025-11-23 22:20:01,322 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-23 23:21:07] 2025-11-23 22:20:01,621 | INFO     | sufficient remaining disk space (495155412992 B)
[2025-11-23 23:21:07] 2025-11-23 22:20:01,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 23:21:07] 2025-11-23 22:20:01,622 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 23:21:07] 2025-11-23 22:20:01,622 | INFO     | update_server=False
[2025-11-23 23:21:07] 2025-11-23 22:20:01,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 23:21:07] 2025-11-23 22:20:01,622 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:21:07] 2025-11-23 22:20:01,623 | INFO     | aborting loop
[2025-11-23 23:21:07] 2025-11-23 22:20:01,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 23:21:07] 2025-11-23 22:20:01,783 | INFO     | all job control threads have been joined
[2025-11-23 23:21:07] 2025-11-23 22:20:02,069 | INFO     | all payload control threads have been joined
[2025-11-23 23:21:07] 2025-11-23 22:20:02,463 | INFO     | all data control threads have been joined
[2025-11-23 23:21:07] 2025-11-23 22:20:02,627 | INFO     | [job] retrieve thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:02,628 | INFO     | [job] job monitor thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:02,789 | INFO     | [job] control thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:02,794 | INFO     | [data] copytool_in thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:02,811 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:02,889 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:03,063 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 23:21:07] 2025-11-23 22:20:03,075 | INFO     | [payload] control thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:03,094 | INFO     | [job] validate thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:03,469 | INFO     | [data] control thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:03,607 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:03,630 | INFO     | [data] copytool_out thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:03,976 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 23:21:07] 2025-11-23 22:20:04,069 | INFO     | [job] queue monitor thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:04,073 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:04,102 | INFO     | [payload] validate_post thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:04,151 | INFO     | [payload] failed_post thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:07,986 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 23:21:07] 2025-11-23 22:20:31,478 | INFO     | PID=9008 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-23 23:21:07] 2025-11-23 22:20:31,478 | INFO     | .. there are 9 such processes running
[2025-11-23 23:21:07] 2025-11-23 22:20:31,479 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 23:21:07] 2025-11-23 22:20:31,479 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 23:21:07] 2025-11-23 22:20:31,479 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 23:21:07] 2025-11-23 22:20:55,526 | INFO     | [monitor] cgroup control has ended
[2025-11-23 23:21:07] 2025-11-23 22:20:57,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140050755123008)>', '<ExcThread(monitor, started 140049555388160)>']
[2025-11-23 23:21:07] 2025-11-23 22:20:57,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 23:21:07] 2025-11-23 22:20:57,636 | INFO     | [monitor] control thread has ended
[2025-11-23 23:21:07] 2025-11-23 22:21:02,448 | INFO     | all workflow threads have been joined
[2025-11-23 23:21:07] 2025-11-23 22:21:02,449 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 23:21:07] 2025-11-23 22:21:02,449 | INFO     | traces error code: 0
[2025-11-23 23:21:07] 2025-11-23 22:21:02,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 23:21:07] 2025-11-23 22:21:02,858 [wrapper] ==== pilot stdout END ====
[2025-11-23 23:21:07] 2025-11-23 22:21:02,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 23:21:07] 2025-11-23 22:21:03,016 [wrapper] pilotpid: 9008
[2025-11-23 23:21:07] 2025-11-23 22:21:03,049 [wrapper] Pilot exit status: 0
[2025-11-23 23:21:07] 2025-11-23 22:21:03,394 [wrapper] pandaids: 6892549571
[2025-11-23 23:21:07] 2025-11-23 22:21:04,268 [wrapper] cleanup supervisor_pilot  3493 9009
[2025-11-23 23:21:07] 2025-11-23 22:21:04,283 [wrapper] Test setup, not cleaning
[2025-11-23 23:21:07] 2025-11-23 22:21:04,379 [wrapper] apfmon messages muted
[2025-11-23 23:21:07] 2025-11-23 22:21:04,442 [wrapper] ==== wrapper stdout END ====
[2025-11-23 23:21:07] 2025-11-23 22:21:04,488 [wrapper] ==== wrapper stderr END ====
[2025-11-23 23:21:07]  *** Error codes and diagnostics ***
[2025-11-23 23:21:07]     "exeErrorCode": 0,
[2025-11-23 23:21:07]     "exeErrorDiag": "",
[2025-11-23 23:21:07]     "pilotErrorCode": 0,
[2025-11-23 23:21:07]     "pilotErrorDiag": "",
[2025-11-23 23:21:07]  *** Listing of results directory ***
[2025-11-23 23:21:07] total 1326544
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc    576529 Nov 19 09:32 pilot3.tar.gz
[2025-11-23 23:21:07] -rwx------. 1 boinc boinc     36292 Nov 19 09:58 runpilot2-wrapper.sh
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc      5112 Nov 19 09:58 queuedata.json
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc       100 Nov 22 22:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 23:21:07] -rwxr-xr-x. 1 boinc boinc      7986 Nov 22 22:02 run_atlas
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc       105 Nov 22 22:02 job.xml
[2025-11-23 23:21:07] -rw-r--r--. 2 boinc boinc 412008552 Nov 22 22:02 EVNT.47493027._000363.pool.root.1
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc      6389 Nov 22 22:02 init_data.xml
[2025-11-23 23:21:07] -rw-r--r--. 2 boinc boinc     15120 Nov 22 22:02 start_atlas.sh
[2025-11-23 23:21:07] drwxrwx--x. 2 boinc boinc        68 Nov 22 22:02 shared
[2025-11-23 23:21:07] -rw-r--r--. 2 boinc boinc    590100 Nov 22 22:02 input.tar.gz
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc         0 Nov 22 22:02 boinc_lockfile
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc      2773 Nov 22 22:03 pandaJob.out
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc    989768 Nov 22 22:07 agis_schedconf.cvmfs.json
[2025-11-23 23:21:07] drwx------. 5 boinc boinc      4096 Nov 22 22:07 pilot3
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc       533 Nov 23 22:52 boinc_task_state.xml
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc 913146010 Nov 23 23:16 HITS.47493029._003584.pool.root.1
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc      1031 Nov 23 23:18 memory_monitor_summary.json
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc   1526164 Nov 23 23:18 agis_ddmendpoints.agis.ALL.json
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc   2559757 Nov 23 23:18 log.47493029._003584.job.log.tgz.1
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc      7946 Nov 23 23:19 heartbeat.json
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc        95 Nov 23 23:20 pilot_heartbeat.json
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc        29 Nov 23 23:20 wrapper_checkpoint.txt
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc      8192 Nov 23 23:20 boinc_mmap_file
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc      4884 Nov 23 23:21 pilotlog.txt
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc  12099657 Nov 23 23:21 log.47493029._003584.job.log.1
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc       353 Nov 23 23:21 output.list
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc       620 Nov 23 23:21 runtime_log
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc  14673920 Nov 23 23:21 result.tar.gz
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc       662 Nov 23 23:21 iIGMDmLCtf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd7GKDmtYVWRm.diag
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc      8717 Nov 23 23:21 runtime_log.err
[2025-11-23 23:21:07] -rw-r--r--. 1 boinc boinc     21501 Nov 23 23:21 stderr.txt
[2025-11-23 23:21:07] HITS file was successfully produced:
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc 913146010 Nov 23 23:16 shared/HITS.pool.root.1
[2025-11-23 23:21:07]  *** Contents of shared directory: ***
[2025-11-23 23:21:07] total 1309032
[2025-11-23 23:21:07] -rw-r--r--. 2 boinc boinc 412008552 Nov 22 22:02 ATLAS.root_0
[2025-11-23 23:21:07] -rw-r--r--. 2 boinc boinc     15120 Nov 22 22:02 start_atlas.sh
[2025-11-23 23:21:07] -rw-r--r--. 2 boinc boinc    590100 Nov 22 22:02 input.tar.gz
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc 913146010 Nov 23 23:16 HITS.pool.root.1
[2025-11-23 23:21:07] -rw-------. 1 boinc boinc  14673920 Nov 23 23:21 result.tar.gz
23:21:08 (5244): run_atlas exited; CPU time 335296.288424
23:21:08 (5244): called boinc_finish(0)

</stderr_txt>
]]>

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