Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:33:23 (3816936): wrapper (7.7.26015): starting
08:33:23 (3816936): wrapper: running run_atlas (--nthreads 4)
[2025-11-26 08:33:23] Arguments: --nthreads 4
[2025-11-26 08:33:23] Threads: 4
[2025-11-26 08:33:23] Checking for CVMFS
[2025-11-26 08:33:23] No cvmfs_config command found, will try listing directly
[2025-11-26 08:33:23] CVMFS is ok
[2025-11-26 08:33:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:33:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:33:23] Further information can be found at the LHC@home message board.
[2025-11-26 08:33:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:33:23] Checking for apptainer binary...
[2025-11-26 08:33:23] which: no apptainer in ((null))
[2025-11-26 08:33:23] apptainer is not installed, using version from CVMFS
[2025-11-26 08:33:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:33:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-11-26 08:33:23] apptainer works
[2025-11-26 08:33:23] Set ATHENA_PROC_NUMBER=4
[2025-11-26 08:33:23] Set ATHENA_CORE_NUMBER=4
[2025-11-26 08:33:23] Starting ATLAS job with PandaID=6892544200
[2025-11-26 08:33:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:25:15]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:25:15] 2025-11-26 23:24:36,062 | INFO     | time since job start (57058s) is within the limit (172800.0s)
[2025-11-27 00:25:15] 2025-11-26 23:24:36,287 | INFO     | monitor loop #3849: job 0:6892544200 is in state 'finished'
[2025-11-27 00:25:15] 2025-11-26 23:24:36,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,325 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 00:25:15] 2025-11-26 23:24:37,346 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2706.3216328125
[2025-11-27 00:25:15] 2025-11-26 23:24:37,371 | INFO     | using path: /scratch/boinc/var/slot124/slots/0/PanDA_Pilot-6892544200/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,372 | INFO     | extracted standard info from prmon json
[2025-11-27 00:25:15] 2025-11-26 23:24:37,372 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:25:15] 2025-11-26 23:24:37,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:25:15] 2025-11-26 23:24:37,386 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:25:15] 2025-11-26 23:24:37,388 | INFO     | sum of square deviations: 253461943020.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,409 | INFO     | sum of deviations: 587714239077.0001
[2025-11-27 00:25:15] 2025-11-26 23:24:37,409 | INFO     | mean x: 1764170940.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,409 | INFO     | mean y: 2282274.4556149733
[2025-11-27 00:25:15] 2025-11-26 23:24:37,409 | INFO     | intersect: -4088384629.0252075
[2025-11-27 00:25:15] 2025-11-26 23:24:37,410 | INFO     | chi2: 4.175863221427736
[2025-11-27 00:25:15] 2025-11-26 23:24:37,411 | INFO     | sum of square deviations: 249417411372.5
[2025-11-27 00:25:15] 2025-11-26 23:24:37,431 | INFO     | sum of deviations: 778365914010.9996
[2025-11-27 00:25:15] 2025-11-26 23:24:37,432 | INFO     | mean x: 1764170787.5
[2025-11-27 00:25:15] 2025-11-26 23:24:37,432 | INFO     | mean y: 2289458.8752688174
[2025-11-27 00:25:15] 2025-11-26 23:24:37,432 | INFO     | intersect: -5503221964.435671
[2025-11-27 00:25:15] 2025-11-26 23:24:37,433 | INFO     | chi2: 1.9499979839212365
[2025-11-27 00:25:15] 2025-11-26 23:24:37,433 | INFO     | current chi2=1.9499979839212365 (change=53.303116493012716 %)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,434 | INFO     | sum of square deviations: 245416136350.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,453 | INFO     | sum of deviations: 774509198710.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,453 | INFO     | mean x: 1764170635.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,453 | INFO     | mean y: 2289311.1156756757
[2025-11-27 00:25:15] 2025-11-26 23:24:37,453 | INFO     | intersect: -5565259771.93614
[2025-11-27 00:25:15] 2025-11-26 23:24:37,454 | INFO     | chi2: 1.94345786437745
[2025-11-27 00:25:15] 2025-11-26 23:24:37,454 | INFO     | current chi2=1.94345786437745 (change=0.3353910925915389 %)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,454 | INFO     | right removable region: 924
[2025-11-27 00:25:15] 2025-11-26 23:24:37,455 | INFO     | sum of square deviations: 249417411372.5
[2025-11-27 00:25:15] 2025-11-26 23:24:37,475 | INFO     | sum of deviations: 419048922456.5
[2025-11-27 00:25:15] 2025-11-26 23:24:37,475 | INFO     | mean x: 1764171092.5
[2025-11-27 00:25:15] 2025-11-26 23:24:37,475 | INFO     | mean y: 2288622.0376344086
[2025-11-27 00:25:15] 2025-11-26 23:24:37,475 | INFO     | intersect: -2961714537.4568734
[2025-11-27 00:25:15] 2025-11-26 23:24:37,476 | INFO     | chi2: 2.3376543062651267
[2025-11-27 00:25:15] 2025-11-26 23:24:37,476 | INFO     | current chi2=2.3376543062651267 (change=44.01985452325525 %)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,477 | INFO     | sum of square deviations: 245416136350.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,496 | INFO     | sum of deviations: 405939524604.9999
[2025-11-27 00:25:15] 2025-11-26 23:24:37,497 | INFO     | mean x: 1764171245.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,497 | INFO     | mean y: 2289121.0075675678
[2025-11-27 00:25:15] 2025-11-26 23:24:37,497 | INFO     | intersect: -2915802766.3807116
[2025-11-27 00:25:15] 2025-11-26 23:24:37,498 | INFO     | chi2: 2.334806571959635
[2025-11-27 00:25:15] 2025-11-26 23:24:37,498 | INFO     | current chi2=2.334806571959635 (change=0.1218201638223145 %)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,498 | INFO     | left removable region: 20
[2025-11-27 00:25:15] 2025-11-26 23:24:37,499 | INFO     | sum of square deviations: 229077895130.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,518 | INFO     | sum of deviations: 585148768543.0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,518 | INFO     | mean x: 1764171214.5
[2025-11-27 00:25:15] 2025-11-26 23:24:37,518 | INFO     | mean y: 2296486.9380530976
[2025-11-27 00:25:15] 2025-11-26 23:24:37,518 | INFO     | intersect: -4504042341.947465
[2025-11-27 00:25:15] 2025-11-26 23:24:37,519 | INFO     | chi2: 0.08345744792701745
[2025-11-27 00:25:15] 2025-11-26 23:24:37,519 | INFO     | current memory leak: 2.55 B/s (using 904 data points, chi2=0.08)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | could have reported an average CPU frequency of 2680 MHz (35 samples)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | ..............................
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . Timing measurements:
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . get job = 0 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . initial setup = 1 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . payload setup = 9 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . stage-in = 0 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . payload execution = 57016 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . stage-out = 2 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,521 | INFO     | . log creation = 0 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,522 | INFO     | ..............................
[2025-11-27 00:25:15] 2025-11-26 23:24:37,616 | INFO     | 
[2025-11-27 00:25:15] 2025-11-26 23:24:37,616 | INFO     | job summary report
[2025-11-27 00:25:15] 2025-11-26 23:24:37,616 | INFO     | --------------------------------------------------
[2025-11-27 00:25:15] 2025-11-26 23:24:37,616 | INFO     | PanDA job id: 6892544200
[2025-11-27 00:25:15] 2025-11-26 23:24:37,616 | INFO     | task id: 47493029
[2025-11-27 00:25:15] 2025-11-26 23:24:37,616 | INFO     | errors: (none)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | pilot state: finished 
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | transexitcode: 0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | exeerrorcode: 0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | exeerrordiag: 
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | exitcode: 0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | exitmsg: OK
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | cpuconsumptiontime: 226066 s
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | nevents: 1000
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | neventsw: 0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | pid: 3828732
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | pgrp: 3828732
[2025-11-27 00:25:15] 2025-11-26 23:24:37,617 | INFO     | corecount: 4
[2025-11-27 00:25:15] 2025-11-26 23:24:37,618 | INFO     | event service: False
[2025-11-27 00:25:15] 2025-11-26 23:24:37,618 | INFO     | sizes: {0: 2284316, 7: 2284578, 11: 2284606, 57029: 2338799, 57031: 2347817, 57032: 2347873, 57041: 2348247}
[2025-11-27 00:25:15] 2025-11-26 23:24:37,618 | INFO     | --------------------------------------------------
[2025-11-27 00:25:15] 2025-11-26 23:24:37,618 | INFO     | 
[2025-11-27 00:25:15] 2025-11-26 23:24:37,618 | INFO     | executing command: ls -lF /scratch/boinc/var/slot124/slots/0
[2025-11-27 00:25:15] 2025-11-26 23:24:37,648 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,650 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:25:15] 2025-11-26 23:24:37,651 | INFO     | job 6892544200 has completed (purged errors)
[2025-11-27 00:25:15] 2025-11-26 23:24:37,651 | INFO     | overall cleanup function is called
[2025-11-27 00:25:15] 2025-11-26 23:24:38,668 | INFO     | --- collectZombieJob: --- 10, [3828732]
[2025-11-27 00:25:15] 2025-11-26 23:24:38,668 | INFO     | zombie collector waiting for pid 3828732
[2025-11-27 00:25:15] 2025-11-26 23:24:38,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:25:15] 2025-11-26 23:24:38,669 | INFO     | collected zombie processes
[2025-11-27 00:25:15] 2025-11-26 23:24:38,669 | INFO     | will attempt to kill all subprocesses of pid=3828732
[2025-11-27 00:25:15] 2025-11-26 23:24:39,464 | INFO     | process IDs to be killed: [3828732] (in reverse order)
[2025-11-27 00:25:15] 2025-11-26 23:24:39,687 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:25:15] 2025-11-26 23:24:39,688 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:25:15] 2025-11-26 23:24:39,720 | INFO     | did not find any defunct processes belonging to 3828732
[2025-11-27 00:25:15] 2025-11-26 23:24:39,750 | INFO     | did not find any defunct processes belonging to 3828732
[2025-11-27 00:25:15] 2025-11-26 23:24:39,752 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:25:15] 2025-11-26 23:24:39,752 | INFO     | ready for new job
[2025-11-27 00:25:15] 2025-11-26 23:24:39,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:25:15] 2025-11-26 23:24:39,758 | INFO     | ***************************************
[2025-11-27 00:25:15] 2025-11-26 23:24:39,759 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:25:15] 2025-11-26 23:24:39,759 | INFO     | ***************************************
[2025-11-27 00:25:15] 2025-11-26 23:24:39,759 | INFO     | 
[2025-11-27 00:25:15] 2025-11-26 23:24:39,766 | INFO     | architecture information:
[2025-11-27 00:25:15] 2025-11-26 23:24:39,767 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:25:15] 2025-11-26 23:24:39,786 | INFO     | cat /etc/os-release:
[2025-11-27 00:25:15] NAME="CentOS Linux"
[2025-11-27 00:25:15] VERSION="7 (Core)"
[2025-11-27 00:25:15] ID="centos"
[2025-11-27 00:25:15] ID_LIKE="rhel fedora"
[2025-11-27 00:25:15] VERSION_ID="7"
[2025-11-27 00:25:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:25:15] ANSI_COLOR="0;31"
[2025-11-27 00:25:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:25:15] HOME_URL="https://www.centos.org/"
[2025-11-27 00:25:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:25:15] 
[2025-11-27 00:25:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:25:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:25:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:25:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:25:15] 
[2025-11-27 00:25:15] 2025-11-26 23:24:39,786 | INFO     | ***************************************
[2025-11-27 00:25:15] 2025-11-26 23:24:40,289 | INFO     | executing command: df -mP /scratch/boinc/var/slot124/slots/0
[2025-11-27 00:25:15] 2025-11-26 23:24:40,315 | INFO     | sufficient remaining disk space (3288051220480 B)
[2025-11-27 00:25:15] 2025-11-26 23:24:40,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:25:15] 2025-11-26 23:24:40,316 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:25:15] 2025-11-26 23:24:40,316 | INFO     | update_server=False
[2025-11-27 00:25:15] 2025-11-26 23:24:40,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:25:15] 2025-11-26 23:24:40,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:25:15] 2025-11-26 23:24:40,317 | INFO     | aborting loop
[2025-11-27 00:25:15] 2025-11-26 23:24:40,330 | INFO     | all job control threads have been joined
[2025-11-27 00:25:15] 2025-11-26 23:24:40,701 | INFO     | all payload control threads have been joined
[2025-11-27 00:25:15] 2025-11-26 23:24:40,899 | INFO     | all data control threads have been joined
[2025-11-27 00:25:15] 2025-11-26 23:24:41,245 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:25:15] 2025-11-26 23:24:41,321 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:41,322 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:41,336 | INFO     | [job] control thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:41,480 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:41,669 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:41,706 | INFO     | [payload] control thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:41,898 | INFO     | [job] validate thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:41,905 | INFO     | [data] control thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:42,076 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:42,183 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:42,219 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:42,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:42,627 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:25:15] 2025-11-26 23:24:42,794 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:43,250 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:43,633 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:24:43,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:25:15] 2025-11-26 23:24:47,782 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:25:15] 2025-11-26 23:25:09,916 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:25:15] 2025-11-26 23:25:09,927 | INFO     | PID=3821264 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 00:25:15] 2025-11-26 23:25:09,927 | INFO     | .. there are 5 such processes running
[2025-11-27 00:25:15] 2025-11-26 23:25:09,927 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:25:15] 2025-11-26 23:25:09,927 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:25:15] 2025-11-26 23:25:09,927 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:25:15] 2025-11-26 23:25:10,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23314848401216)>', '<ExcThread(monitor, started 23314611275520)>']
[2025-11-27 00:25:15] 2025-11-26 23:25:10,933 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:25:15] 2025-11-26 23:25:10,933 | INFO     | [monitor] control thread has ended
[2025-11-27 00:25:15] 2025-11-26 23:25:15,092 | INFO     | all workflow threads have been joined
[2025-11-27 00:25:15] 2025-11-26 23:25:15,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:25:15] 2025-11-26 23:25:15,092 | INFO     | traces error code: 0
[2025-11-27 00:25:15] 2025-11-26 23:25:15,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:25:15] 2025-11-26 23:25:15,246 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:25:15] 2025-11-26 23:25:15,249 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:25:15] 2025-11-26 23:25:15,252 [wrapper] pilotpid: 3821264
[2025-11-27 00:25:15] 2025-11-26 23:25:15,254 [wrapper] Pilot exit status: 0
[2025-11-27 00:25:15] 2025-11-26 23:25:15,267 [wrapper] pandaids: 6892544200
[2025-11-27 00:25:15] 2025-11-26 23:25:15,436 [wrapper] cleanup supervisor_pilot  893926 3821265
[2025-11-27 00:25:15] 2025-11-26 23:25:15,441 [wrapper] Test setup, not cleaning
[2025-11-27 00:25:15] 2025-11-26 23:25:15,445 [wrapper] apfmon messages muted
[2025-11-27 00:25:15] 2025-11-26 23:25:15,449 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:25:15] 2025-11-26 23:25:15,453 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:25:15]  *** Error codes and diagnostics ***
[2025-11-27 00:25:15]     "exeErrorCode": 0,
[2025-11-27 00:25:15]     "exeErrorDiag": "",
[2025-11-27 00:25:15]     "pilotErrorCode": 0,
[2025-11-27 00:25:15]     "pilotErrorDiag": "",
[2025-11-27 00:25:15]  *** Listing of results directory ***
[2025-11-27 00:25:15] total 1326540
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc      5112 Nov 19 09:10 queuedata.json
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc    576529 Nov 19 09:11 pilot3.tar.gz
[2025-11-27 00:25:15] -rwx------ 1 boinc boinc     36292 Nov 19 09:12 runpilot2-wrapper.sh
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc       100 Nov 26 08:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:25:15] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 08:33 run_atlas
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc       105 Nov 26 08:33 job.xml
[2025-11-27 00:25:15] -rw-r--r-- 2 boinc boinc 410350583 Nov 26 08:33 EVNT.47493027._000278.pool.root.1
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc      6687 Nov 26 08:33 init_data.xml
[2025-11-27 00:25:15] -rw-r--r-- 2 boinc boinc     15120 Nov 26 08:33 start_atlas.sh
[2025-11-27 00:25:15] drwxrwx--x 2 boinc boinc      4096 Nov 26 08:33 shared
[2025-11-27 00:25:15] -rw-r--r-- 2 boinc boinc    590100 Nov 26 08:33 input.tar.gz
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc         0 Nov 26 08:33 boinc_lockfile
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc      2773 Nov 26 08:33 pandaJob.out
[2025-11-27 00:25:15] -rw------- 1 boinc boinc    991877 Nov 26 08:33 agis_schedconf.cvmfs.json
[2025-11-27 00:25:15] drwx------ 5 boinc boinc      4096 Nov 26 08:33 pilot3
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc       532 Nov 27 00:18 boinc_task_state.xml
[2025-11-27 00:25:15] -rw------- 1 boinc boinc 925016306 Nov 27 00:23 HITS.47493029._002738.pool.root.1
[2025-11-27 00:25:15] -rw------- 1 boinc boinc      1042 Nov 27 00:24 memory_monitor_summary.json
[2025-11-27 00:25:15] -rw------- 1 boinc boinc   1516240 Nov 27 00:24 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:25:15] -rw------- 1 boinc boinc   1675473 Nov 27 00:24 log.47493029._002738.job.log.tgz.1
[2025-11-27 00:25:15] -rw------- 1 boinc boinc        95 Nov 27 00:24 pilot_heartbeat.json
[2025-11-27 00:25:15] -rw------- 1 boinc boinc      8592 Nov 27 00:24 heartbeat.json
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc      8192 Nov 27 00:25 boinc_mmap_file
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc        28 Nov 27 00:25 wrapper_checkpoint.txt
[2025-11-27 00:25:15] -rw------- 1 boinc boinc      4836 Nov 27 00:25 pilotlog.txt
[2025-11-27 00:25:15] -rw------- 1 boinc boinc   7865524 Nov 27 00:25 log.47493029._002738.job.log.1
[2025-11-27 00:25:15] -rw------- 1 boinc boinc       353 Nov 27 00:25 output.list
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc       620 Nov 27 00:25 runtime_log
[2025-11-27 00:25:15] -rw------- 1 boinc boinc   9564160 Nov 27 00:25 result.tar.gz
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc      9085 Nov 27 00:25 runtime_log.err
[2025-11-27 00:25:15] -rw------- 1 boinc boinc       670 Nov 27 00:25 f5LLDmRTsf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmX4FKDmDsqdin.diag
[2025-11-27 00:25:15] -rw-r--r-- 1 boinc boinc     21050 Nov 27 00:25 stderr.txt
[2025-11-27 00:25:15] HITS file was successfully produced:
[2025-11-27 00:25:15] -rw------- 1 boinc boinc 925016306 Nov 27 00:23 shared/HITS.pool.root.1
[2025-11-27 00:25:15]  *** Contents of shared directory: ***
[2025-11-27 00:25:15] total 1314020
[2025-11-27 00:25:15] -rw-r--r-- 2 boinc boinc 410350583 Nov 26 08:33 ATLAS.root_0
[2025-11-27 00:25:15] -rw-r--r-- 2 boinc boinc     15120 Nov 26 08:33 start_atlas.sh
[2025-11-27 00:25:15] -rw-r--r-- 2 boinc boinc    590100 Nov 26 08:33 input.tar.gz
[2025-11-27 00:25:15] -rw------- 1 boinc boinc 925016306 Nov 27 00:23 HITS.pool.root.1
[2025-11-27 00:25:15] -rw------- 1 boinc boinc   9564160 Nov 27 00:25 result.tar.gz
00:25:17 (3816936): run_atlas exited; CPU time 229077.354011
00:25:17 (3816936): called boinc_finish(0)

</stderr_txt>
]]>

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