Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:03:05 (636885): wrapper (7.7.26015): starting
09:03:05 (636885): wrapper: running run_atlas (--nthreads 2)
[2025-11-26 09:03:05] Arguments: --nthreads 2
[2025-11-26 09:03:05] Threads: 2
[2025-11-26 09:03:05] Checking for CVMFS
[2025-11-26 09:03:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 09:03:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 09:03:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 09:03:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 09:03:06] 2.9.2.0 3559039 10933 59928 153314 3 81 12253584 36864001 0 130560 1 3516763 99.927 557389 742 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-26 09:03:06] CVMFS is ok
[2025-11-26 09:03:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 09:03:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 09:03:06] Further information can be found at the LHC@home message board.
[2025-11-26 09:03:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 09:03:06] Checking for apptainer binary...
[2025-11-26 09:03:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 09:03:06] Running /usr/bin/apptainer --version
[2025-11-26 09:03:06] apptainer version 1.4.1-1.1
[2025-11-26 09:03:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 09:03:06] atlasA221
[2025-11-26 09:03:06] apptainer works
[2025-11-26 09:03:06] Set ATHENA_PROC_NUMBER=2
[2025-11-26 09:03:06] Set ATHENA_CORE_NUMBER=2
[2025-11-26 09:03:06] Starting ATLAS job with PandaID=6892526446
[2025-11-26 09:03:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:59:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:59:24] 2025-11-26 19:58:33,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:59:24] 2025-11-26 19:58:33,910 | INFO     | job 6892526446 has completed (purged errors)
[2025-11-26 20:59:24] 2025-11-26 19:58:33,910 | INFO     | overall cleanup function is called
[2025-11-26 20:59:24] 2025-11-26 19:58:34,916 | INFO     | --- collectZombieJob: --- 10, [647019]
[2025-11-26 20:59:24] 2025-11-26 19:58:34,917 | INFO     | zombie collector waiting for pid 647019
[2025-11-26 20:59:24] 2025-11-26 19:58:34,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:59:24] 2025-11-26 19:58:34,917 | INFO     | collected zombie processes
[2025-11-26 20:59:24] 2025-11-26 19:58:34,917 | INFO     | will attempt to kill all subprocesses of pid=647019
[2025-11-26 20:59:24] 2025-11-26 19:58:34,950 | INFO     | process IDs to be killed: [647019] (in reverse order)
[2025-11-26 20:59:24] 2025-11-26 19:58:34,971 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:59:24] 2025-11-26 19:58:34,972 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:59:24] 2025-11-26 19:58:34,972 | INFO     | did not find any defunct processes belonging to 647019
[2025-11-26 20:59:24] 2025-11-26 19:58:34,973 | INFO     | did not find any defunct processes belonging to 647019
[2025-11-26 20:59:24] 2025-11-26 19:58:34,974 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:59:24] 2025-11-26 19:58:34,974 | INFO     | ready for new job
[2025-11-26 20:59:24] 2025-11-26 19:58:34,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:59:24] 2025-11-26 19:58:34,975 | INFO     | ***************************************
[2025-11-26 20:59:24] 2025-11-26 19:58:34,975 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:59:24] 2025-11-26 19:58:34,975 | INFO     | ***************************************
[2025-11-26 20:59:24] 2025-11-26 19:58:34,975 | INFO     | 
[2025-11-26 20:59:24] 2025-11-26 19:58:34,975 | INFO     | architecture information:
[2025-11-26 20:59:24] 2025-11-26 19:58:34,975 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:59:24] 2025-11-26 19:58:34,984 | INFO     | cat /etc/os-release:
[2025-11-26 20:59:24] NAME="CentOS Linux"
[2025-11-26 20:59:24] VERSION="7 (Core)"
[2025-11-26 20:59:24] ID="centos"
[2025-11-26 20:59:24] ID_LIKE="rhel fedora"
[2025-11-26 20:59:24] VERSION_ID="7"
[2025-11-26 20:59:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:59:24] ANSI_COLOR="0;31"
[2025-11-26 20:59:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:59:24] HOME_URL="https://www.centos.org/"
[2025-11-26 20:59:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:59:24] 
[2025-11-26 20:59:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:59:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:59:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:59:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:59:24] 
[2025-11-26 20:59:24] 2025-11-26 19:58:34,984 | INFO     | ***************************************
[2025-11-26 20:59:24] 2025-11-26 19:58:35,488 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | INFO     | sufficient remaining disk space (188584296448 B)
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | INFO     | update_server=False
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:59:24] 2025-11-26 19:58:35,500 | INFO     | aborting loop
[2025-11-26 20:59:24] 2025-11-26 19:58:35,692 | INFO     | all data control threads have been joined
[2025-11-26 20:59:24] 2025-11-26 19:58:36,211 | INFO     | all payload control threads have been joined
[2025-11-26 20:59:24] 2025-11-26 19:58:36,506 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:36,507 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:36,507 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:36,513 | INFO     | all job control threads have been joined
[2025-11-26 20:59:24] 2025-11-26 19:58:36,674 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:36,698 | INFO     | [data] control thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:36,781 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:36,907 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:59:24] 2025-11-26 19:58:37,217 | INFO     | [payload] control thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:37,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:59:24] 2025-11-26 19:58:37,281 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:37,519 | INFO     | [job] control thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:37,557 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:37,582 | INFO     | [job] validate thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:37,632 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:37,678 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:37,797 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:38,913 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:58:41,255 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:59:24] 2025-11-26 19:59:05,782 | INFO     | PID=640595 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 20:59:24] 2025-11-26 19:59:05,783 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:59:24] 2025-11-26 19:59:05,783 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:59:24] 2025-11-26 19:59:05,783 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:59:24] 2025-11-26 19:59:17,768 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:59:24] 2025-11-26 19:59:18,897 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140428505364288)>', '<ExcThread(monitor, started 140427646727936)>']
[2025-11-26 20:59:24] 2025-11-26 19:59:19,857 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:59:24] 2025-11-26 19:59:19,858 | INFO     | [monitor] control thread has ended
[2025-11-26 20:59:24] 2025-11-26 19:59:23,923 | INFO     | all workflow threads have been joined
[2025-11-26 20:59:24] 2025-11-26 19:59:23,924 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:59:24] 2025-11-26 19:59:23,924 | INFO     | traces error code: 0
[2025-11-26 20:59:24] 2025-11-26 19:59:23,925 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:59:24] 2025-11-26 19:59:23,969 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:59:24] 2025-11-26 19:59:23,971 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:59:24] 2025-11-26 19:59:23,974 [wrapper] pilotpid: 640595
[2025-11-26 20:59:24] 2025-11-26 19:59:23,976 [wrapper] Pilot exit status: 0
[2025-11-26 20:59:24] 2025-11-26 19:59:23,983 [wrapper] pandaids: 6892526446
[2025-11-26 20:59:24] 2025-11-26 19:59:23,997 [wrapper] cleanup supervisor_pilot  716595 640596
[2025-11-26 20:59:24] 2025-11-26 19:59:23,999 [wrapper] Test setup, not cleaning
[2025-11-26 20:59:24] 2025-11-26 19:59:24,002 [wrapper] apfmon messages muted
[2025-11-26 20:59:24] 2025-11-26 19:59:24,004 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:59:24] 2025-11-26 19:59:24,006 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:59:24]  *** Error codes and diagnostics ***
[2025-11-26 20:59:24]     "exeErrorCode": 0,
[2025-11-26 20:59:24]     "exeErrorDiag": "",
[2025-11-26 20:59:24]     "pilotErrorCode": 0,
[2025-11-26 20:59:24]     "pilotErrorDiag": "",
[2025-11-26 20:59:24]  *** Listing of results directory ***
[2025-11-26 20:59:24] total 1305016
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc    576529 Nov 19 08:00 pilot3.tar.gz
[2025-11-26 20:59:24] -rwx------ 1 boinc boinc     36292 Nov 19 08:10 runpilot2-wrapper.sh
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc      5112 Nov 19 08:10 queuedata.json
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc       100 Nov 26 09:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:59:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 26 09:03 run_atlas
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc       105 Nov 26 09:03 job.xml
[2025-11-26 20:59:24] -rw-r--r-- 2 boinc boinc 410294892 Nov 26 09:03 EVNT.47493027._000105.pool.root.1
[2025-11-26 20:59:24] -rw-r--r-- 2 boinc boinc    590096 Nov 26 09:03 input.tar.gz
[2025-11-26 20:59:24] -rw-r--r-- 2 boinc boinc     15120 Nov 26 09:03 start_atlas.sh
[2025-11-26 20:59:24] drwxrwx--x 2 boinc boinc      4096 Nov 26 09:03 shared
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc         0 Nov 26 09:03 boinc_setup_complete
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc      6286 Nov 26 09:03 init_data.xml
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc         0 Nov 26 09:03 boinc_lockfile
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc      2773 Nov 26 09:03 pandaJob.out
[2025-11-26 20:59:24] -rw------- 1 boinc boinc    991877 Nov 26 09:03 agis_schedconf.cvmfs.json
[2025-11-26 20:59:24] drwx------ 5 boinc boinc      4096 Nov 26 09:03 pilot3
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc       531 Nov 26 20:55 boinc_task_state.xml
[2025-11-26 20:59:24] -rw------- 1 boinc boinc 907706390 Nov 26 20:58 HITS.47493029._001005.pool.root.1
[2025-11-26 20:59:24] -rw------- 1 boinc boinc      1023 Nov 26 20:58 memory_monitor_summary.json
[2025-11-26 20:59:24] -rw------- 1 boinc boinc   1516240 Nov 26 20:58 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:59:24] -rw------- 1 boinc boinc   1201260 Nov 26 20:58 log.47493029._001005.job.log.tgz.1
[2025-11-26 20:59:24] -rw------- 1 boinc boinc      8575 Nov 26 20:58 heartbeat.json
[2025-11-26 20:59:24] -rw------- 1 boinc boinc        95 Nov 26 20:59 pilot_heartbeat.json
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc      8192 Nov 26 20:59 boinc_mmap_file
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc        28 Nov 26 20:59 wrapper_checkpoint.txt
[2025-11-26 20:59:24] -rw------- 1 boinc boinc      4751 Nov 26 20:59 pilotlog.txt
[2025-11-26 20:59:24] -rw------- 1 boinc boinc   6011831 Nov 26 20:59 log.47493029._001005.job.log.1
[2025-11-26 20:59:24] -rw------- 1 boinc boinc       353 Nov 26 20:59 output.list
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc       620 Nov 26 20:59 runtime_log
[2025-11-26 20:59:24] -rw------- 1 boinc boinc   7229440 Nov 26 20:59 result.tar.gz
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc      8793 Nov 26 20:59 runtime_log.err
[2025-11-26 20:59:24] -rw------- 1 boinc boinc       668 Nov 26 20:59 5IQNDmQVrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSvFKDmU0UjMo.diag
[2025-11-26 20:59:24] -rw-r--r-- 1 boinc boinc     12565 Nov 26 20:59 stderr.txt
[2025-11-26 20:59:24] HITS file was successfully produced:
[2025-11-26 20:59:24] -rw------- 1 boinc boinc 907706390 Nov 26 20:58 shared/HITS.pool.root.1
[2025-11-26 20:59:24]  *** Contents of shared directory: ***
[2025-11-26 20:59:24] total 1294780
[2025-11-26 20:59:24] -rw-r--r-- 2 boinc boinc 410294892 Nov 26 09:03 ATLAS.root_0
[2025-11-26 20:59:24] -rw-r--r-- 2 boinc boinc    590096 Nov 26 09:03 input.tar.gz
[2025-11-26 20:59:24] -rw-r--r-- 2 boinc boinc     15120 Nov 26 09:03 start_atlas.sh
[2025-11-26 20:59:24] -rw------- 1 boinc boinc 907706390 Nov 26 20:58 HITS.pool.root.1
[2025-11-26 20:59:24] -rw------- 1 boinc boinc   7229440 Nov 26 20:59 result.tar.gz
20:59:26 (636885): run_atlas exited; CPU time 85074.152399
20:59:26 (636885): called boinc_finish(0)

</stderr_txt>
]]>

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